data_3KHA # _entry.id 3KHA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3KHA RCSB RCSB055991 WWPDB D_1000055991 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2012-09-12 _pdbx_database_PDB_obs_spr.pdb_id 4FXI _pdbx_database_PDB_obs_spr.replace_pdb_id 3KHA _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 4FXI _pdbx_database_related.details 'Higher resolution crystal structure of the same crystal form of RelE' _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3KHA _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-10-30 _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Andersen, K.R.' 1 'Brodersen, D.E.' 2 # _citation.id primary _citation.title 'The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 139 _citation.page_first 1084 _citation.page_last 1095 _citation.year 2009 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20005802 _citation.pdbx_database_id_DOI 10.1016/j.cell.2009.11.015 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Neubauer, C.' 1 primary 'Gao, Y.G.' 2 primary 'Andersen, K.R.' 3 primary 'Dunham, C.M.' 4 primary 'Kelley, A.C.' 5 primary 'Hentschel, J.' 6 primary 'Gerdes, K.' 7 primary 'Ramakrishnan, V.' 8 primary 'Brodersen, D.E.' 9 # _cell.length_a 40.350 _cell.length_b 60.790 _cell.length_c 70.320 _cell.angle_alpha 90.000 _cell.angle_beta 104.530 _cell.angle_gamma 90.000 _cell.entry_id 3KHA _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.entry_id 3KHA _symmetry.Int_Tables_number 4 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Toxin relE' 11160.134 3 ? R81A ? ? 2 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK AERSEVYSEAVKRIL ; _entity_poly.pdbx_seq_one_letter_code_can ;MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK AERSEVYSEAVKRIL ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 TYR n 1 4 PHE n 1 5 LEU n 1 6 ASP n 1 7 PHE n 1 8 ASP n 1 9 GLU n 1 10 ARG n 1 11 ALA n 1 12 LEU n 1 13 LYS n 1 14 GLU n 1 15 TRP n 1 16 ARG n 1 17 LYS n 1 18 LEU n 1 19 GLY n 1 20 SER n 1 21 THR n 1 22 VAL n 1 23 ARG n 1 24 GLU n 1 25 GLN n 1 26 LEU n 1 27 LYS n 1 28 LYS n 1 29 LYS n 1 30 LEU n 1 31 VAL n 1 32 GLU n 1 33 VAL n 1 34 LEU n 1 35 GLU n 1 36 SER n 1 37 PRO n 1 38 ARG n 1 39 ILE n 1 40 GLU n 1 41 ALA n 1 42 ASN n 1 43 LYS n 1 44 LEU n 1 45 ARG n 1 46 GLY n 1 47 MET n 1 48 PRO n 1 49 ASP n 1 50 CYS n 1 51 TYR n 1 52 LYS n 1 53 ILE n 1 54 LYS n 1 55 LEU n 1 56 ARG n 1 57 SER n 1 58 SER n 1 59 GLY n 1 60 TYR n 1 61 ARG n 1 62 LEU n 1 63 VAL n 1 64 TYR n 1 65 GLN n 1 66 VAL n 1 67 ILE n 1 68 ASP n 1 69 GLU n 1 70 LYS n 1 71 VAL n 1 72 VAL n 1 73 VAL n 1 74 PHE n 1 75 VAL n 1 76 ILE n 1 77 SER n 1 78 VAL n 1 79 GLY n 1 80 LYS n 1 81 ALA n 1 82 GLU n 1 83 ARG n 1 84 SER n 1 85 GLU n 1 86 VAL n 1 87 TYR n 1 88 SER n 1 89 GLU n 1 90 ALA n 1 91 VAL n 1 92 LYS n 1 93 ARG n 1 94 ILE n 1 95 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'b1563, JW1555, relE' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K-12 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 83333 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 DE3' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMG25 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RELE_ECOLI _struct_ref.pdbx_db_accession P0C077 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK RERSEVYSEAVKRIL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KHA A 1 ? 95 ? P0C077 1 ? 95 ? 1 95 2 1 3KHA B 1 ? 95 ? P0C077 1 ? 95 ? 1 95 3 1 3KHA C 1 ? 95 ? P0C077 1 ? 95 ? 1 95 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KHA ALA A 81 ? UNP P0C077 ARG 81 ENGINEERED 81 1 2 3KHA ALA B 81 ? UNP P0C077 ARG 81 ENGINEERED 81 2 3 3KHA ALA C 81 ? UNP P0C077 ARG 81 ENGINEERED 81 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KHA _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.49 _exptl_crystal.density_percent_sol 50.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M Mes, 0.2M (NH4)2SO4, and 30% w/v PEG 5000 monomethylether, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277.0K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2009-06-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal Si(111), horizontally focusing mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9202 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'EMBL/DESY, HAMBURG BEAMLINE X12' _diffrn_source.pdbx_synchrotron_site 'EMBL/DESY, Hamburg' _diffrn_source.pdbx_synchrotron_beamline X12 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9202 # _reflns.entry_id 3KHA _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 19.53 _reflns.d_resolution_high 2.500 _reflns.number_obs 11263 _reflns.number_all ? _reflns.percent_possible_obs 97.500 _reflns.pdbx_Rmerge_I_obs 0.089 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 10.790 _reflns.B_iso_Wilson_estimate 56.265 _reflns.pdbx_redundancy 3.85 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.75 _reflns_shell.percent_possible_all 97.70 _reflns_shell.Rmerge_I_obs 0.519 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.9 _reflns_shell.pdbx_redundancy 3.88 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3KHA _refine.ls_number_reflns_obs 11259 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.530 _refine.ls_d_res_high 2.500 _refine.ls_percent_reflns_obs 97.79 _refine.ls_R_factor_obs 0.2281 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2260 _refine.ls_R_factor_R_free 0.2677 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.84 _refine.ls_number_reflns_R_free 545 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 74.359 _refine.aniso_B[1][1] 0.323 _refine.aniso_B[2][2] -2.064 _refine.aniso_B[3][3] -13.503 _refine.aniso_B[1][2] -0.000 _refine.aniso_B[1][3] 5.974 _refine.aniso_B[2][3] 0.000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.330 _refine.solvent_model_param_bsol 59.419 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details 'ANISOTROPIC B VALUES REPRESENT TLS PARAMETERS' _refine.pdbx_starting_model 'Poly-Ala model of PDB entry 2KC9' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model 'INDIVIDUAL ISOTROPIC' _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.22 _refine.pdbx_overall_phase_error 33.50 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2328 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 2346 _refine_hist.d_res_high 2.500 _refine_hist.d_res_low 19.530 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.009 ? ? 2361 'X-RAY DIFFRACTION' ? f_angle_d 1.356 ? ? 3162 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 21.442 ? ? 921 'X-RAY DIFFRACTION' ? f_chiral_restr 0.078 ? ? 354 'X-RAY DIFFRACTION' ? f_plane_restr 0.004 ? ? 393 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 1 A 745 0.785 ? POSITIONAL 1 1 'X-RAY DIFFRACTION' ? ? ? 2 B 745 0.785 ? POSITIONAL 1 2 'X-RAY DIFFRACTION' ? ? ? 3 C 745 1.151 ? POSITIONAL 1 3 'X-RAY DIFFRACTION' ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.5000 2.7510 2644 0.3158 98.00 0.3870 . . 137 . . . . 'X-RAY DIFFRACTION' . 2.7510 3.1476 2675 0.2929 98.00 0.3594 . . 124 . . . . 'X-RAY DIFFRACTION' . 3.1476 3.9602 2662 0.2160 98.00 0.2668 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.9602 19.5308 2733 0.1885 98.00 0.2141 . . 143 . . . . # loop_ _struct_ncs_oper.id _struct_ncs_oper.code _struct_ncs_oper.details _struct_ncs_oper.matrix[1][1] _struct_ncs_oper.matrix[1][2] _struct_ncs_oper.matrix[1][3] _struct_ncs_oper.matrix[2][1] _struct_ncs_oper.matrix[2][2] _struct_ncs_oper.matrix[2][3] _struct_ncs_oper.matrix[3][1] _struct_ncs_oper.matrix[3][2] _struct_ncs_oper.matrix[3][3] _struct_ncs_oper.vector[1] _struct_ncs_oper.vector[2] _struct_ncs_oper.vector[3] 1 given ? -0.477629 -0.789289 -0.385867 0.790139 -0.577937 0.204129 -0.384123 -0.207391 0.899688 20.644300 7.420190 29.392900 2 given ? -0.467394 0.803841 -0.367944 -0.809444 -0.556465 -0.187474 -0.355447 0.210206 0.910753 -2.492740 27.882000 47.214901 # loop_ _struct_ncs_dom.id _struct_ncs_dom.details _struct_ncs_dom.pdbx_ens_id 1 A 1 2 B 1 3 C 1 # loop_ _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.selection_details 1 A 2 A 56 1 ? ? ? ? ? ? ? ? ? 1 'chain A and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' 1 A 58 A 80 2 ? ? ? ? ? ? ? ? ? 1 'chain A and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' 1 A 84 A 95 3 ? ? ? ? ? ? ? ? ? 1 'chain A and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' 2 B 2 B 56 1 ? ? ? ? ? ? ? ? ? 1 'chain B and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' 2 B 58 B 80 2 ? ? ? ? ? ? ? ? ? 1 'chain B and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' 2 B 84 B 95 3 ? ? ? ? ? ? ? ? ? 1 'chain B and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' 3 C 2 C 56 1 ? ? ? ? ? ? ? ? ? 1 'chain C and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' 3 C 58 C 80 2 ? ? ? ? ? ? ? ? ? 1 'chain C and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' 3 C 84 C 95 3 ? ? ? ? ? ? ? ? ? 1 'chain C and (resseq 2:56 or resseq 58:80 or resseq 84:95 )' # _struct_ncs_ens.id 1 _struct_ncs_ens.details ? # _struct.entry_id 3KHA _struct.title 'The crystal structure of the isolated E. coli RelE toxin' _struct.pdbx_descriptor 'Toxin relE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KHA _struct_keywords.pdbx_keywords TOXIN _struct_keywords.text ;Toxin-antitoxin systems, translational control, ribosome, Repressor, Stress response, Toxin, Transcription, Transcription regulation ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 8 ? LYS A 17 ? ASP A 8 LYS A 17 1 ? 10 HELX_P HELX_P2 2 GLY A 19 ? SER A 36 ? GLY A 19 SER A 36 1 ? 18 HELX_P HELX_P3 3 ILE A 39 ? LYS A 43 ? ILE A 39 LYS A 43 5 ? 5 HELX_P HELX_P4 4 ASP A 68 ? LYS A 70 ? ASP A 68 LYS A 70 5 ? 3 HELX_P HELX_P5 5 SER A 84 ? LEU A 95 ? SER A 84 LEU A 95 1 ? 12 HELX_P HELX_P6 6 ASP B 8 ? LEU B 18 ? ASP B 8 LEU B 18 1 ? 11 HELX_P HELX_P7 7 GLY B 19 ? SER B 36 ? GLY B 19 SER B 36 1 ? 18 HELX_P HELX_P8 8 ILE B 39 ? LYS B 43 ? ILE B 39 LYS B 43 5 ? 5 HELX_P HELX_P9 9 SER B 84 ? LEU B 95 ? SER B 84 LEU B 95 1 ? 12 HELX_P HELX_P10 10 ASP C 8 ? LYS C 17 ? ASP C 8 LYS C 17 1 ? 10 HELX_P HELX_P11 11 GLY C 19 ? SER C 36 ? GLY C 19 SER C 36 1 ? 18 HELX_P HELX_P12 12 ILE C 39 ? LYS C 43 ? ILE C 39 LYS C 43 5 ? 5 HELX_P HELX_P13 13 ASP C 68 ? LYS C 70 ? ASP C 68 LYS C 70 5 ? 3 HELX_P HELX_P14 14 GLU C 85 ? LEU C 95 ? GLU C 85 LEU C 95 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 SER 58 A . ? SER 58 A GLY 59 A ? GLY 59 A 1 -0.44 2 ALA 81 A . ? ALA 81 A GLU 82 A ? GLU 82 A 1 -6.93 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 4 ? PHE A 7 ? PHE A 4 PHE A 7 A 2 VAL A 72 ? GLY A 79 ? VAL A 72 GLY A 79 A 3 ARG A 61 ? ILE A 67 ? ARG A 61 ILE A 67 A 4 CYS A 50 ? LYS A 54 ? CYS A 50 LYS A 54 B 1 PHE B 4 ? PHE B 7 ? PHE B 4 PHE B 7 B 2 VAL B 72 ? GLY B 79 ? VAL B 72 GLY B 79 B 3 ARG B 61 ? ILE B 67 ? ARG B 61 ILE B 67 B 4 CYS B 50 ? LYS B 54 ? CYS B 50 LYS B 54 C 1 PHE C 4 ? PHE C 7 ? PHE C 4 PHE C 7 C 2 VAL C 72 ? LYS C 80 ? VAL C 72 LYS C 80 C 3 TYR C 60 ? ILE C 67 ? TYR C 60 ILE C 67 C 4 CYS C 50 ? LEU C 55 ? CYS C 50 LEU C 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 4 ? N PHE A 4 O VAL A 73 ? O VAL A 73 A 2 3 O SER A 77 ? O SER A 77 N VAL A 63 ? N VAL A 63 A 3 4 O TYR A 64 ? O TYR A 64 N TYR A 51 ? N TYR A 51 B 1 2 N ASP B 6 ? N ASP B 6 O VAL B 75 ? O VAL B 75 B 2 3 O GLY B 79 ? O GLY B 79 N ARG B 61 ? N ARG B 61 B 3 4 O TYR B 64 ? O TYR B 64 N TYR B 51 ? N TYR B 51 C 1 2 N PHE C 4 ? N PHE C 4 O VAL C 73 ? O VAL C 73 C 2 3 O GLY C 79 ? O GLY C 79 N ARG C 61 ? N ARG C 61 C 3 4 O LEU C 62 ? O LEU C 62 N ILE C 53 ? N ILE C 53 # _atom_sites.entry_id 3KHA _atom_sites.fract_transf_matrix[1][1] 0.024783 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006421 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016450 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014690 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 PHE 7 7 7 PHE PHE A . n A 1 8 ASP 8 8 8 ASP ASP A . n A 1 9 GLU 9 9 9 GLU GLU A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ALA 11 11 11 ALA ALA A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 LYS 13 13 13 LYS LYS A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 TRP 15 15 15 TRP TRP A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 SER 20 20 20 SER SER A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLN 25 25 25 GLN GLN A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 LYS 29 29 29 LYS LYS A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 PRO 37 37 37 PRO PRO A . n A 1 38 ARG 38 38 38 ARG ARG A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ARG 45 45 45 ARG ARG A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 MET 47 47 47 MET MET A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 TYR 51 51 51 TYR TYR A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ILE 53 53 53 ILE ILE A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 SER 57 57 57 SER SER A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 GLY 59 59 59 GLY GLY A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 TYR 64 64 64 TYR TYR A . n A 1 65 GLN 65 65 65 GLN GLN A . n A 1 66 VAL 66 66 66 VAL VAL A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 GLU 69 69 69 GLU GLU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 VAL 71 71 71 VAL VAL A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 SER 77 77 77 SER SER A . n A 1 78 VAL 78 78 78 VAL VAL A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 LYS 80 80 80 LYS LYS A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 SER 84 84 84 SER SER A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 VAL 86 86 86 VAL VAL A . n A 1 87 TYR 87 87 87 TYR TYR A . n A 1 88 SER 88 88 88 SER SER A . n A 1 89 GLU 89 89 89 GLU GLU A . n A 1 90 ALA 90 90 90 ALA ALA A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 ILE 94 94 94 ILE ILE A . n A 1 95 LEU 95 95 95 LEU LEU A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 ALA 2 2 2 ALA ALA B . n B 1 3 TYR 3 3 3 TYR TYR B . n B 1 4 PHE 4 4 4 PHE PHE B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 ASP 6 6 6 ASP ASP B . n B 1 7 PHE 7 7 7 PHE PHE B . n B 1 8 ASP 8 8 8 ASP ASP B . n B 1 9 GLU 9 9 9 GLU GLU B . n B 1 10 ARG 10 10 10 ARG ARG B . n B 1 11 ALA 11 11 11 ALA ALA B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 LYS 13 13 13 LYS LYS B . n B 1 14 GLU 14 14 14 GLU GLU B . n B 1 15 TRP 15 15 15 TRP TRP B . n B 1 16 ARG 16 16 16 ARG ARG B . n B 1 17 LYS 17 17 17 LYS LYS B . n B 1 18 LEU 18 18 18 LEU LEU B . n B 1 19 GLY 19 19 19 GLY GLY B . n B 1 20 SER 20 20 20 SER SER B . n B 1 21 THR 21 21 21 THR THR B . n B 1 22 VAL 22 22 22 VAL VAL B . n B 1 23 ARG 23 23 23 ARG ARG B . n B 1 24 GLU 24 24 24 GLU GLU B . n B 1 25 GLN 25 25 25 GLN GLN B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 LYS 27 27 27 LYS LYS B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 LYS 29 29 29 LYS LYS B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 VAL 31 31 31 VAL VAL B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 VAL 33 33 33 VAL VAL B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 SER 36 36 36 SER SER B . n B 1 37 PRO 37 37 37 PRO PRO B . n B 1 38 ARG 38 38 38 ARG ARG B . n B 1 39 ILE 39 39 39 ILE ILE B . n B 1 40 GLU 40 40 40 GLU GLU B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 ASN 42 42 42 ASN ASN B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 ARG 45 45 45 ARG ARG B . n B 1 46 GLY 46 46 46 GLY GLY B . n B 1 47 MET 47 47 47 MET MET B . n B 1 48 PRO 48 48 48 PRO PRO B . n B 1 49 ASP 49 49 49 ASP ASP B . n B 1 50 CYS 50 50 50 CYS CYS B . n B 1 51 TYR 51 51 51 TYR TYR B . n B 1 52 LYS 52 52 52 LYS LYS B . n B 1 53 ILE 53 53 53 ILE ILE B . n B 1 54 LYS 54 54 54 LYS LYS B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 ARG 56 56 56 ARG ARG B . n B 1 57 SER 57 57 57 SER SER B . n B 1 58 SER 58 58 58 SER SER B . n B 1 59 GLY 59 59 59 GLY GLY B . n B 1 60 TYR 60 60 60 TYR TYR B . n B 1 61 ARG 61 61 61 ARG ARG B . n B 1 62 LEU 62 62 62 LEU LEU B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 TYR 64 64 64 TYR TYR B . n B 1 65 GLN 65 65 65 GLN GLN B . n B 1 66 VAL 66 66 66 VAL VAL B . n B 1 67 ILE 67 67 67 ILE ILE B . n B 1 68 ASP 68 68 68 ASP ASP B . n B 1 69 GLU 69 69 69 GLU GLU B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 VAL 71 71 71 VAL VAL B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 VAL 73 73 73 VAL VAL B . n B 1 74 PHE 74 74 74 PHE PHE B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 ILE 76 76 76 ILE ILE B . n B 1 77 SER 77 77 77 SER SER B . n B 1 78 VAL 78 78 78 VAL VAL B . n B 1 79 GLY 79 79 79 GLY GLY B . n B 1 80 LYS 80 80 80 LYS LYS B . n B 1 81 ALA 81 81 81 ALA ALA B . n B 1 82 GLU 82 82 82 GLU GLU B . n B 1 83 ARG 83 83 83 ARG ARG B . n B 1 84 SER 84 84 84 SER SER B . n B 1 85 GLU 85 85 85 GLU GLU B . n B 1 86 VAL 86 86 86 VAL VAL B . n B 1 87 TYR 87 87 87 TYR TYR B . n B 1 88 SER 88 88 88 SER SER B . n B 1 89 GLU 89 89 89 GLU GLU B . n B 1 90 ALA 90 90 90 ALA ALA B . n B 1 91 VAL 91 91 91 VAL VAL B . n B 1 92 LYS 92 92 92 LYS LYS B . n B 1 93 ARG 93 93 93 ARG ARG B . n B 1 94 ILE 94 94 94 ILE ILE B . n B 1 95 LEU 95 95 95 LEU LEU B . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 ALA 2 2 2 ALA ALA C . n C 1 3 TYR 3 3 3 TYR TYR C . n C 1 4 PHE 4 4 4 PHE PHE C . n C 1 5 LEU 5 5 5 LEU LEU C . n C 1 6 ASP 6 6 6 ASP ASP C . n C 1 7 PHE 7 7 7 PHE PHE C . n C 1 8 ASP 8 8 8 ASP ASP C . n C 1 9 GLU 9 9 9 GLU GLU C . n C 1 10 ARG 10 10 10 ARG ARG C . n C 1 11 ALA 11 11 11 ALA ALA C . n C 1 12 LEU 12 12 12 LEU LEU C . n C 1 13 LYS 13 13 13 LYS LYS C . n C 1 14 GLU 14 14 14 GLU GLU C . n C 1 15 TRP 15 15 15 TRP TRP C . n C 1 16 ARG 16 16 16 ARG ARG C . n C 1 17 LYS 17 17 17 LYS LYS C . n C 1 18 LEU 18 18 18 LEU LEU C . n C 1 19 GLY 19 19 19 GLY GLY C . n C 1 20 SER 20 20 20 SER SER C . n C 1 21 THR 21 21 21 THR THR C . n C 1 22 VAL 22 22 22 VAL VAL C . n C 1 23 ARG 23 23 23 ARG ARG C . n C 1 24 GLU 24 24 24 GLU GLU C . n C 1 25 GLN 25 25 25 GLN GLN C . n C 1 26 LEU 26 26 26 LEU LEU C . n C 1 27 LYS 27 27 27 LYS LYS C . n C 1 28 LYS 28 28 28 LYS LYS C . n C 1 29 LYS 29 29 29 LYS LYS C . n C 1 30 LEU 30 30 30 LEU LEU C . n C 1 31 VAL 31 31 31 VAL VAL C . n C 1 32 GLU 32 32 32 GLU GLU C . n C 1 33 VAL 33 33 33 VAL VAL C . n C 1 34 LEU 34 34 34 LEU LEU C . n C 1 35 GLU 35 35 35 GLU GLU C . n C 1 36 SER 36 36 36 SER SER C . n C 1 37 PRO 37 37 37 PRO PRO C . n C 1 38 ARG 38 38 38 ARG ARG C . n C 1 39 ILE 39 39 39 ILE ILE C . n C 1 40 GLU 40 40 40 GLU GLU C . n C 1 41 ALA 41 41 41 ALA ALA C . n C 1 42 ASN 42 42 42 ASN ASN C . n C 1 43 LYS 43 43 43 LYS LYS C . n C 1 44 LEU 44 44 44 LEU LEU C . n C 1 45 ARG 45 45 45 ARG ARG C . n C 1 46 GLY 46 46 46 GLY GLY C . n C 1 47 MET 47 47 47 MET MET C . n C 1 48 PRO 48 48 48 PRO PRO C . n C 1 49 ASP 49 49 49 ASP ASP C . n C 1 50 CYS 50 50 50 CYS CYS C . n C 1 51 TYR 51 51 51 TYR TYR C . n C 1 52 LYS 52 52 52 LYS LYS C . n C 1 53 ILE 53 53 53 ILE ILE C . n C 1 54 LYS 54 54 54 LYS LYS C . n C 1 55 LEU 55 55 55 LEU LEU C . n C 1 56 ARG 56 56 56 ARG ARG C . n C 1 57 SER 57 57 57 SER SER C . n C 1 58 SER 58 58 58 SER SER C . n C 1 59 GLY 59 59 59 GLY GLY C . n C 1 60 TYR 60 60 60 TYR TYR C . n C 1 61 ARG 61 61 61 ARG ARG C . n C 1 62 LEU 62 62 62 LEU LEU C . n C 1 63 VAL 63 63 63 VAL VAL C . n C 1 64 TYR 64 64 64 TYR TYR C . n C 1 65 GLN 65 65 65 GLN GLN C . n C 1 66 VAL 66 66 66 VAL VAL C . n C 1 67 ILE 67 67 67 ILE ILE C . n C 1 68 ASP 68 68 68 ASP ASP C . n C 1 69 GLU 69 69 69 GLU GLU C . n C 1 70 LYS 70 70 70 LYS LYS C . n C 1 71 VAL 71 71 71 VAL VAL C . n C 1 72 VAL 72 72 72 VAL VAL C . n C 1 73 VAL 73 73 73 VAL VAL C . n C 1 74 PHE 74 74 74 PHE PHE C . n C 1 75 VAL 75 75 75 VAL VAL C . n C 1 76 ILE 76 76 76 ILE ILE C . n C 1 77 SER 77 77 77 SER SER C . n C 1 78 VAL 78 78 78 VAL VAL C . n C 1 79 GLY 79 79 79 GLY GLY C . n C 1 80 LYS 80 80 80 LYS LYS C . n C 1 81 ALA 81 81 81 ALA ALA C . n C 1 82 GLU 82 82 82 GLU GLU C . n C 1 83 ARG 83 83 83 ARG ARG C . n C 1 84 SER 84 84 84 SER SER C . n C 1 85 GLU 85 85 85 GLU GLU C . n C 1 86 VAL 86 86 86 VAL VAL C . n C 1 87 TYR 87 87 87 TYR TYR C . n C 1 88 SER 88 88 88 SER SER C . n C 1 89 GLU 89 89 89 GLU GLU C . n C 1 90 ALA 90 90 90 ALA ALA C . n C 1 91 VAL 91 91 91 VAL VAL C . n C 1 92 LYS 92 92 92 LYS LYS C . n C 1 93 ARG 93 93 93 ARG ARG C . n C 1 94 ILE 94 94 94 ILE ILE C . n C 1 95 LEU 95 95 95 LEU LEU C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 HOH 1 96 3 HOH HOH A . D 2 HOH 2 97 16 HOH HOH A . D 2 HOH 3 98 19 HOH HOH A . D 2 HOH 4 99 22 HOH HOH A . D 2 HOH 5 100 34 HOH HOH A . D 2 HOH 6 101 28 HOH HOH A . E 2 HOH 1 96 4 HOH HOH B . E 2 HOH 2 97 10 HOH HOH B . E 2 HOH 3 98 12 HOH HOH B . E 2 HOH 4 99 13 HOH HOH B . E 2 HOH 5 100 14 HOH HOH B . E 2 HOH 6 101 17 HOH HOH B . E 2 HOH 7 102 20 HOH HOH B . E 2 HOH 8 103 29 HOH HOH B . E 2 HOH 9 104 33 HOH HOH B . F 2 HOH 1 96 9 HOH HOH C . F 2 HOH 2 97 11 HOH HOH C . F 2 HOH 3 99 32 HOH HOH C . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D 2 1 B,E 3 1 C,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-09-12 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Source and taxonomy' 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' Other # _pdbx_phasing_MR.entry_id 3KHA _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor 53.100 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 2.500 _pdbx_phasing_MR.d_res_low_rotation 19.530 _pdbx_phasing_MR.d_res_high_translation 2.500 _pdbx_phasing_MR.d_res_low_translation 19.530 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 XSCALE . ? package 'Wolfgang Kabsch' ? 'data processing' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 2 PHASER 2.1.4 'Sun Dec 7 17:33:01 2008' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk 'molecular replacement' http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 3 PHENIX . ? package 'Paul D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 XSCALE . ? ? ? ? 'data reduction' ? ? ? 6 XSCALE . ? ? ? ? 'data scaling' ? ? ? 7 PHASER . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C B MET 47 ? ? N B PRO 48 ? ? CA B PRO 48 ? ? 133.23 119.30 13.93 1.50 Y 2 1 C B MET 47 ? ? N B PRO 48 ? ? CD B PRO 48 ? ? 114.98 128.40 -13.42 2.10 Y 3 1 C C SER 36 ? ? N C PRO 37 ? ? CA C PRO 37 ? ? 128.75 119.30 9.45 1.50 Y 4 1 C C MET 47 ? ? N C PRO 48 ? ? CA C PRO 48 ? ? 132.62 119.30 13.32 1.50 Y 5 1 C C MET 47 ? ? N C PRO 48 ? ? CD C PRO 48 ? ? 115.75 128.40 -12.65 2.10 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 17 ? ? -62.12 16.20 2 1 SER A 36 ? ? -168.38 88.79 3 1 PRO A 48 ? ? -51.86 -92.49 4 1 ASP A 49 ? ? -78.04 32.00 5 1 ARG A 56 ? ? 76.83 -100.93 6 1 SER A 58 ? ? -53.26 -73.12 7 1 ILE A 67 ? ? -112.74 72.30 8 1 VAL A 71 ? ? 37.72 63.02 9 1 LYS A 80 ? ? -69.27 30.00 10 1 ALA A 81 ? ? 53.50 -145.74 11 1 ARG A 83 ? ? 165.57 -114.47 12 1 SER B 36 ? ? -174.31 85.45 13 1 ASP B 49 ? ? -114.88 53.36 14 1 SER B 57 ? ? -48.81 -81.02 15 1 LYS B 80 ? ? -105.91 42.98 16 1 ALA B 81 ? ? 14.12 -105.99 17 1 GLU B 82 ? ? 65.30 -40.36 18 1 LYS C 17 ? ? -70.39 31.25 19 1 SER C 57 ? ? -76.59 -73.41 20 1 ALA C 81 ? ? -177.83 91.88 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 B MET 1 ? B MET 1 3 1 Y 1 C MET 1 ? C MET 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #