HEADER TRANSFERASE/DNA 30-OCT-09 3KHH TITLE DPO4 EXTENSION TERNARY COMPLEX WITH A C BASE OPPOSITE THE 2- TITLE 2 AMINOFLUORENE-GUANINE [AF]G LESION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IV; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POL IV; COMPND 5 EC: 2.7.7.7; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: 5'-D(*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*GP*(DOC))-3'; COMPND 9 CHAIN: D, H; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*CP*CP*TP*A*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP* COMPND 14 CP*C)-3'; COMPND 15 CHAIN: E, J; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: DNA [AF]G-MODIFIED TEMPLATE STRAND SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 STRAIN: P2 / DSM 1617 / JCM 11322; SOURCE 5 GENE: DBH, DPO4, SSO2448; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL(STRATAGENE); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: DNA PRIMER STRAND (DIDEOXY-TERMINATED AT THE 3'-END); SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: DNA [AF]G-MODIFIED TEMPLATE STRAND KEYWDS LESION BYPASS, DNA POLYMERASE, Y-FAMILY POLYMERASE, 2-AMINOFLUORENE, KEYWDS 2 SEMI-TARGETED MUTAGENESIS, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, KEYWDS 3 DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, MAGNESIUM, METAL-BINDING, KEYWDS 4 MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, TRANSFERASE, TRANSFERASE- KEYWDS 5 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.RECHKOBLIT,L.MALININA,D.J.PATEL REVDAT 5 06-SEP-23 3KHH 1 REMARK REVDAT 4 13-OCT-21 3KHH 1 REMARK DBREF SEQADV LINK REVDAT 3 13-JUL-11 3KHH 1 VERSN REVDAT 2 16-MAR-10 3KHH 1 JRNL REVDAT 1 16-FEB-10 3KHH 0 JRNL AUTH O.RECHKOBLIT,A.KOLBANOVSKIY,L.MALININA,N.E.GEACINTOV, JRNL AUTH 2 S.BROYDE,D.J.PATEL JRNL TITL MECHANISM OF ERROR-FREE AND SEMITARGETED MUTAGENIC BYPASS OF JRNL TITL 2 AN AROMATIC AMINE LESION BY Y-FAMILY POLYMERASE DPO4. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 379 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20154704 JRNL DOI 10.1038/NSMB.1771 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 26483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1415 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5480 REMARK 3 NUCLEIC ACID ATOMS : 1194 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 92 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.50000 REMARK 3 B22 (A**2) : 0.52000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.356 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.265 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.049 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7009 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9671 ; 1.365 ; 2.222 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.355 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;34.789 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1120 ;18.198 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;18.216 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1099 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4707 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3414 ; 0.496 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5522 ; 0.850 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3595 ; 1.176 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4149 ; 2.032 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 341 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0436 1.7417 1.2894 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.1097 REMARK 3 T33: 0.1030 T12: 0.0912 REMARK 3 T13: 0.0361 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.7657 L22: 1.0681 REMARK 3 L33: 1.8641 L12: 0.5466 REMARK 3 L13: -0.0797 L23: -0.2853 REMARK 3 S TENSOR REMARK 3 S11: 0.0328 S12: 0.2463 S13: -0.1360 REMARK 3 S21: -0.1751 S22: -0.0853 S23: -0.1841 REMARK 3 S31: 0.1775 S32: 0.0890 S33: 0.0525 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1001 B 1341 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2760 14.0549 42.7607 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.0206 REMARK 3 T33: 0.1026 T12: 0.0282 REMARK 3 T13: -0.0112 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 1.5367 L22: 1.3714 REMARK 3 L33: 2.9315 L12: 0.6678 REMARK 3 L13: 0.9742 L23: 1.1982 REMARK 3 S TENSOR REMARK 3 S11: 0.0239 S12: -0.0740 S13: 0.0715 REMARK 3 S21: 0.0168 S22: 0.0407 S23: 0.0257 REMARK 3 S31: -0.0205 S32: -0.0268 S33: -0.0645 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 802 D 814 REMARK 3 RESIDUE RANGE : E 904 E 919 REMARK 3 RESIDUE RANGE : A 414 A 414 REMARK 3 ORIGIN FOR THE GROUP (A): -1.4314 -11.8075 0.3473 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.0865 REMARK 3 T33: 0.2692 T12: -0.0337 REMARK 3 T13: -0.0832 T23: -0.0866 REMARK 3 L TENSOR REMARK 3 L11: 4.2999 L22: 4.2434 REMARK 3 L33: 3.9328 L12: 2.1675 REMARK 3 L13: -0.9544 L23: 1.1994 REMARK 3 S TENSOR REMARK 3 S11: -0.4405 S12: 0.2545 S13: -0.5506 REMARK 3 S21: -0.5415 S22: 0.1381 S23: 0.0300 REMARK 3 S31: 0.2030 S32: -0.2589 S33: 0.3024 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1802 H 1814 REMARK 3 RESIDUE RANGE : J 1902 J 1919 REMARK 3 RESIDUE RANGE : B 1414 B 1414 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3294 12.1800 60.8031 REMARK 3 T TENSOR REMARK 3 T11: 0.1554 T22: 0.2070 REMARK 3 T33: 0.2708 T12: 0.0244 REMARK 3 T13: 0.0072 T23: 0.0398 REMARK 3 L TENSOR REMARK 3 L11: 3.2857 L22: 2.6081 REMARK 3 L33: 7.3366 L12: 0.1622 REMARK 3 L13: -1.7189 L23: 0.8913 REMARK 3 S TENSOR REMARK 3 S11: -0.0236 S12: -0.3750 S13: -0.2230 REMARK 3 S21: 0.2928 S22: 0.2299 S23: 0.4304 REMARK 3 S31: 0.6974 S32: -0.3131 S33: -0.2063 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000055998. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2ASD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES PH 7.0, 100 MM CALCIUM REMARK 280 ACETATE, 10% PEG 4000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.39950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.9 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.6 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 DC E 901 REMARK 465 DT E 902 REMARK 465 DA E 903 REMARK 465 DC J 1901 REMARK 465 DT J 1902 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DA E 904 P OP1 OP2 REMARK 470 DA J1903 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG D 802 C6 DG D 802 N1 0.053 REMARK 500 DT E 908 O3' DT E 908 C3' -0.042 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG D 805 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG D 806 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DG D 809 O4' - C1' - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG D 810 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG D 810 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG D 810 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA E 904 C3' - O3' - P ANGL. DEV. = 8.5 DEGREES REMARK 500 DC E 907 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC E 911 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC E 915 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC E 915 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DA E 917 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DC E 918 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 DG H1802 O4' - C4' - C3' ANGL. DEV. = -3.1 DEGREES REMARK 500 DG H1802 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT H1803 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT H1804 O4' - C1' - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT H1808 C1' - O4' - C4' ANGL. DEV. = -6.2 DEGREES REMARK 500 DG H1809 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 DG H1810 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 DT H1811 C3' - C2' - C1' ANGL. DEV. = -5.9 DEGREES REMARK 500 DT H1811 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC J1905 O4' - C4' - C3' ANGL. DEV. = -2.6 DEGREES REMARK 500 DG J1906 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 DC J1910 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA J1912 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT J1913 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC J1914 O4' - C1' - N1 ANGL. DEV. = 4.2 DEGREES REMARK 500 DC J1915 O4' - C1' - N1 ANGL. DEV. = 4.8 DEGREES REMARK 500 DA J1917 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 58.13 32.22 REMARK 500 ASN A 20 75.62 -167.51 REMARK 500 PHE A 37 74.27 -101.91 REMARK 500 LYS A 98 91.29 -69.83 REMARK 500 SER A 103 -169.72 -170.79 REMARK 500 ASN A 161 47.36 29.13 REMARK 500 MET A 216 -45.39 -173.05 REMARK 500 LYS A 278 -22.79 87.40 REMARK 500 TYR B1010 61.45 23.64 REMARK 500 PRO B1021 1.16 -66.95 REMARK 500 ASN B1234 11.28 -151.29 REMARK 500 ARG B1240 -75.69 -70.24 REMARK 500 VAL B1241 -46.43 61.11 REMARK 500 ASP B1277 86.78 42.66 REMARK 500 LYS B1278 -25.39 81.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 88.0 REMARK 620 3 ASP A 105 OD2 92.7 100.3 REMARK 620 4 DGT A 414 O3B 134.0 122.5 111.7 REMARK 620 5 DGT A 414 O2B 83.3 170.2 84.7 62.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 105 OD1 REMARK 620 2 ASP A 105 OD2 48.6 REMARK 620 3 GLU A 106 OE2 104.3 109.8 REMARK 620 4 DGT A 414 O2B 125.1 78.4 77.8 REMARK 620 5 DGT A 414 O3A 136.2 98.9 115.7 53.0 REMARK 620 6 DGT A 414 O2A 155.8 154.5 76.9 79.1 57.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 82.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1416 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1007 OD1 REMARK 620 2 PHE B1008 O 78.9 REMARK 620 3 ASP B1105 OD2 98.8 106.7 REMARK 620 4 DGT B1414 O3G 159.3 86.0 99.0 REMARK 620 5 DGT B1414 O1B 98.0 126.6 126.3 79.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1415 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B1105 OD1 REMARK 620 2 ASP B1105 OD2 48.7 REMARK 620 3 GLU B1106 OE2 78.5 93.4 REMARK 620 4 DGT B1414 O2B 124.8 76.2 112.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1417 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B1181 O REMARK 620 2 ILE B1186 O 82.2 REMARK 620 3 DOC H1814 OP2 149.6 84.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT A 414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF E 926 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DGT B 1414 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1416 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AF J 1926 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KHG RELATED DB: PDB REMARK 900 DPO4 EXTENSION TERNARY COMPLEX WITH MISINSERTED A OPPOSITE THE 2- REMARK 900 AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 900 RELATED ID: 3KHL RELATED DB: PDB REMARK 900 DPO4 POST-EXTENSION TERNARY COMPLEX WITH MISINSERTED A OPPOSITE THE REMARK 900 2-AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 900 RELATED ID: 3KHR RELATED DB: PDB REMARK 900 DPO4 POST-EXTENSION TERNARY COMPLEX WITH THE CORRECT C OPPOSITE THE REMARK 900 2-AMINOFLUORENE-GUANINE [AF]G LESION. REMARK 999 REMARK 999 SEQUENCE REMARK 999 FOR THE CHAINS E AND J, THE 19-MER SEQUENCE OF THE DNA REMARK 999 OLIGO IS 5'-C T A A C [AF]G C T A C C A T C C A A C C-3', REMARK 999 WHERE [AF]G DENOTES A COVALENT MODIFICATION BY AF ON THE REMARK 999 G BASE 906 IN CHAIN E AND THE G BASE 1906 IN CHAIN J: REMARK 999 5'-D(*C*TP*AP*AP*CP*GP*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP* REMARK 999 CP)-3' REMARK 999 THE A3 BASE SHOULD HAVE A PHOSPHATE. DBREF 3KHH A 2 341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3KHH D 802 814 PDB 3KHH 3KHH 802 814 DBREF 3KHH E 901 919 PDB 3KHH 3KHH 901 919 DBREF 3KHH B 1002 1341 UNP Q97W02 DPO42_SULSO 2 341 DBREF 3KHH H 1802 1814 PDB 3KHH 3KHH 1802 1814 DBREF 3KHH J 1901 1919 PDB 3KHH 3KHH 1901 1919 SEQADV 3KHH GLY A 1 UNP Q97W02 EXPRESSION TAG SEQADV 3KHH DOC D 814 PDB 3KHH C 13 ENGINEERED MUTATION SEQADV 3KHH GLY B 1001 UNP Q97W02 EXPRESSION TAG SEQADV 3KHH DOC H 1814 PDB 3KHH C 13 ENGINEERED MUTATION SEQRES 1 A 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 341 LYS PHE ILE SEQRES 1 D 13 DG DT DT DG DG DA DT DG DG DT DA DG DOC SEQRES 1 E 19 DC DT DA DA DC DG DC DT DA DC DC DA DT SEQRES 2 E 19 DC DC DA DA DC DC SEQRES 1 B 341 GLY ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 341 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 341 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 341 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 341 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 341 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 341 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 341 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 341 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 341 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 341 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 341 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 341 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 341 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 341 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 341 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 341 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 341 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 341 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 341 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 341 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 341 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 341 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 341 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 341 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 341 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 341 LYS PHE ILE SEQRES 1 H 13 DG DT DT DG DG DA DT DG DG DT DA DG DOC SEQRES 1 J 19 DC DT DA DA DC DG DC DT DA DC DC DA DT SEQRES 2 J 19 DC DC DA DA DC DC MODRES 3KHH DOC D 814 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE MODRES 3KHH DOC H 1814 DC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HET DOC D 814 18 HET DOC H1814 18 HET DGT A 414 31 HET CA A 415 1 HET CA A 416 1 HET CA A 417 1 HET AF E 926 14 HET DGT B1414 31 HET CA B1415 1 HET CA B1416 1 HET CA B1417 1 HET AF J1926 14 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM CA CALCIUM ION HETNAM AF 2-AMINOFLUORENE FORMUL 2 DOC 2(C9 H14 N3 O6 P) FORMUL 7 DGT 2(C10 H16 N5 O13 P3) FORMUL 8 CA 6(CA 2+) FORMUL 11 AF 2(C13 H11 N) FORMUL 17 HOH *92(H2 O) HELIX 1 1 TYR A 10 LEU A 19 1 10 HELIX 2 2 ASN A 20 LYS A 24 5 5 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 GLU A 94 1 18 HELIX 6 6 ASP A 117 LYS A 137 1 21 HELIX 7 7 ASN A 147 LYS A 159 1 13 HELIX 8 8 ASP A 167 LEU A 178 1 12 HELIX 9 9 ASP A 179 VAL A 183 5 5 HELIX 10 10 GLY A 187 LYS A 196 1 10 HELIX 11 11 VAL A 203 ILE A 208 1 6 HELIX 12 12 GLU A 209 ARG A 230 1 22 HELIX 13 13 ASN A 257 ASP A 277 1 21 HELIX 14 14 SER A 307 ASP A 326 1 20 HELIX 15 15 TYR B 1010 ASN B 1020 1 11 HELIX 16 16 ASN B 1047 PHE B 1053 1 7 HELIX 17 17 PRO B 1060 LEU B 1068 1 9 HELIX 18 18 ARG B 1077 GLU B 1094 1 18 HELIX 19 19 ASP B 1117 LYS B 1137 1 21 HELIX 20 20 ASN B 1147 LYS B 1159 1 13 HELIX 21 21 ASP B 1167 LEU B 1178 1 12 HELIX 22 22 ASP B 1179 VAL B 1183 5 5 HELIX 23 23 GLY B 1187 LYS B 1196 1 10 HELIX 24 24 LYS B 1201 SER B 1207 5 7 HELIX 25 25 GLU B 1209 GLY B 1218 1 10 HELIX 26 26 GLY B 1218 ARG B 1230 1 13 HELIX 27 27 ASN B 1257 ASP B 1277 1 21 HELIX 28 28 SER B 1307 ASP B 1326 1 20 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N VAL A 6 O ALA A 107 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 ALA A 42 ALA A 46 0 SHEET 2 B 3 VAL A 28 VAL A 32 -1 N VAL A 30 O ALA A 44 SHEET 3 B 3 VAL A 72 PRO A 75 1 O LEU A 74 N CYS A 31 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 333 N VAL A 249 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 332 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B1099 ILE B1101 0 SHEET 2 D 5 GLU B1106 ASP B1110 -1 O TYR B1108 N GLU B1100 SHEET 3 D 5 VAL B1003 PHE B1008 -1 N LEU B1004 O LEU B1109 SHEET 4 D 5 VAL B1140 SER B1145 -1 O SER B1145 N VAL B1003 SHEET 5 D 5 ILE B1163 VAL B1165 1 O LYS B1164 N ILE B1144 SHEET 1 E 3 GLY B1041 ALA B1046 0 SHEET 2 E 3 VAL B1028 PHE B1033 -1 N VAL B1030 O THR B1045 SHEET 3 E 3 VAL B1072 PRO B1075 1 O VAL B1072 N VAL B1029 SHEET 1 F 4 SER B1244 SER B1255 0 SHEET 2 F 4 ILE B1330 ILE B1341 -1 O PHE B1337 N ILE B1245 SHEET 3 F 4 ILE B1280 THR B1290 -1 N ILE B1280 O ILE B1341 SHEET 4 F 4 ILE B1295 THR B1301 -1 O VAL B1296 N ALA B1288 LINK O3' DG D 813 P DOC D 814 1555 1555 1.59 LINK C8 DG E 906 N AF E 926 1555 1555 1.44 LINK O3' DG H1813 P DOC H1814 1555 1555 1.61 LINK C8 DG J1906 N AF J1926 1555 1555 1.44 LINK OD1 ASP A 7 CA CA A 416 1555 1555 2.31 LINK O PHE A 8 CA CA A 416 1555 1555 2.32 LINK OD1 ASP A 105 CA CA A 415 1555 1555 2.65 LINK OD2 ASP A 105 CA CA A 415 1555 1555 2.67 LINK OD2 ASP A 105 CA CA A 416 1555 1555 2.32 LINK OE2 GLU A 106 CA CA A 415 1555 1555 2.73 LINK O ALA A 181 CA CA A 417 1555 1555 2.32 LINK O ILE A 186 CA CA A 417 1555 1555 2.33 LINK O2B DGT A 414 CA CA A 415 1555 1555 2.66 LINK O3A DGT A 414 CA CA A 415 1555 1555 3.00 LINK O2A DGT A 414 CA CA A 415 1555 1555 2.32 LINK O3B DGT A 414 CA CA A 416 1555 1555 2.31 LINK O2B DGT A 414 CA CA A 416 1555 1555 2.67 LINK OD1 ASP B1007 CA CA B1416 1555 1555 2.30 LINK O PHE B1008 CA CA B1416 1555 1555 2.32 LINK OD1 ASP B1105 CA CA B1415 1555 1555 2.61 LINK OD2 ASP B1105 CA CA B1415 1555 1555 2.71 LINK OD2 ASP B1105 CA CA B1416 1555 1555 2.32 LINK OE2 GLU B1106 CA CA B1415 1555 1555 2.32 LINK O ALA B1181 CA CA B1417 1555 1555 2.32 LINK O ILE B1186 CA CA B1417 1555 1555 2.33 LINK O2B DGT B1414 CA CA B1415 1555 1555 2.90 LINK O3G DGT B1414 CA CA B1416 1555 1555 2.39 LINK O1B DGT B1414 CA CA B1416 1555 1555 2.32 LINK CA CA B1417 OP2 DOC H1814 1555 1555 2.74 CISPEP 1 LYS A 159 PRO A 160 0 -5.28 CISPEP 2 LYS B 1159 PRO B 1160 0 -11.38 SITE 1 AC1 16 ASP A 7 TYR A 10 PHE A 11 TYR A 12 SITE 2 AC1 16 VAL A 32 THR A 45 ARG A 51 LYS A 78 SITE 3 AC1 16 ASP A 105 GLU A 106 LYS A 159 CA A 415 SITE 4 AC1 16 CA A 416 HOH A 515 HOH A 517 DA E 904 SITE 1 AC2 4 ASP A 105 GLU A 106 DGT A 414 HOH A 543 SITE 1 AC3 4 ASP A 7 PHE A 8 ASP A 105 DGT A 414 SITE 1 AC4 6 ALA A 181 ILE A 186 HOH A 512 HOH A 513 SITE 2 AC4 6 HOH A 514 HOH D 515 SITE 1 AC5 6 ILE A 248 VAL A 287 ARG A 336 DC E 905 SITE 2 AC5 6 DG E 906 DC E 907 SITE 1 AC6 17 HOH B 22 HOH B 35 HOH B 103 ASP B1007 SITE 2 AC6 17 PHE B1008 TYR B1010 PHE B1011 THR B1045 SITE 3 AC6 17 ARG B1051 GLY B1058 ASP B1105 LYS B1159 SITE 4 AC6 17 CA B1415 CA B1416 DOC H1814 DC J1905 SITE 5 AC6 17 DG J1906 SITE 1 AC7 5 HOH B 10 HOH B 103 ASP B1105 GLU B1106 SITE 2 AC7 5 DGT B1414 SITE 1 AC8 6 HOH B 103 ASP B1007 PHE B1008 ASP B1105 SITE 2 AC8 6 LYS B1159 DGT B1414 SITE 1 AC9 6 HOH B 4 ALA B1181 VAL B1183 ILE B1186 SITE 2 AC9 6 HOH H 2 DOC H1814 SITE 1 BC1 5 LEU B1293 ARG B1332 DA J1904 DC J1905 SITE 2 BC1 5 DG J1906 CRYST1 54.746 98.799 98.638 90.00 99.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018266 0.000000 0.002920 0.00000 SCALE2 0.000000 0.010122 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010267 0.00000