data_3KHQ # _entry.id 3KHQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.312 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3KHQ RCSB RCSB056007 WWPDB D_1000056007 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3KG5 . unspecified PDB 3KHO . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KHQ _pdbx_database_status.recvd_initial_deposition_date 2009-10-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Radaev, S.' 1 'Sun, P.D.' 2 # _citation.id primary _citation.title 'Structural and Functional Studies of Igalphabeta and Its Assembly with the B Cell Antigen Receptor.' _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 934 _citation.page_last 943 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20696394 _citation.pdbx_database_id_DOI 10.1016/j.str.2010.04.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Radaev, S.' 1 ? primary 'Zou, Z.' 2 ? primary 'Tolar, P.' 3 ? primary 'Nguyen, K.' 4 ? primary 'Nguyen, A.' 5 ? primary 'Krueger, P.D.' 6 ? primary 'Stutzman, N.' 7 ? primary 'Pierce, S.' 8 ? primary 'Sun, P.D.' 9 ? # _cell.entry_id 3KHQ _cell.length_a 35.63 _cell.length_b 79.72 _cell.length_c 34.32 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KHQ _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'B-cell antigen receptor complex-associated protein beta chain' 15079.915 1 ? ? 'extracellular domain' ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'CITRATE ANION' 189.100 1 ? ? ? ? 4 non-polymer syn GLUTATHIONE 307.323 1 ? ? ? ? 5 water nat water 18.015 58 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ig-beta, B-cell-specific glycoprotein B29, Immunoglobulin-associated B29 protein' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PAMTSSDLPLNFQGSPCSQIWQHPRFAAKKRSSMVKFHCYTNHSGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLT IQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRNTLKDG ; _entity_poly.pdbx_seq_one_letter_code_can ;PAMTSSDLPLNFQGSPCSQIWQHPRFAAKKRSSMVKFHCYTNHSGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLT IQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRNTLKDG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ALA n 1 3 MET n 1 4 THR n 1 5 SER n 1 6 SER n 1 7 ASP n 1 8 LEU n 1 9 PRO n 1 10 LEU n 1 11 ASN n 1 12 PHE n 1 13 GLN n 1 14 GLY n 1 15 SER n 1 16 PRO n 1 17 CYS n 1 18 SER n 1 19 GLN n 1 20 ILE n 1 21 TRP n 1 22 GLN n 1 23 HIS n 1 24 PRO n 1 25 ARG n 1 26 PHE n 1 27 ALA n 1 28 ALA n 1 29 LYS n 1 30 LYS n 1 31 ARG n 1 32 SER n 1 33 SER n 1 34 MET n 1 35 VAL n 1 36 LYS n 1 37 PHE n 1 38 HIS n 1 39 CYS n 1 40 TYR n 1 41 THR n 1 42 ASN n 1 43 HIS n 1 44 SER n 1 45 GLY n 1 46 ALA n 1 47 LEU n 1 48 THR n 1 49 TRP n 1 50 PHE n 1 51 ARG n 1 52 LYS n 1 53 ARG n 1 54 GLY n 1 55 SER n 1 56 GLN n 1 57 GLN n 1 58 PRO n 1 59 GLN n 1 60 GLU n 1 61 LEU n 1 62 VAL n 1 63 SER n 1 64 GLU n 1 65 GLU n 1 66 GLY n 1 67 ARG n 1 68 ILE n 1 69 VAL n 1 70 GLN n 1 71 THR n 1 72 GLN n 1 73 ASN n 1 74 GLY n 1 75 SER n 1 76 VAL n 1 77 TYR n 1 78 THR n 1 79 LEU n 1 80 THR n 1 81 ILE n 1 82 GLN n 1 83 ASN n 1 84 ILE n 1 85 GLN n 1 86 TYR n 1 87 GLU n 1 88 ASP n 1 89 ASN n 1 90 GLY n 1 91 ILE n 1 92 TYR n 1 93 PHE n 1 94 CYS n 1 95 LYS n 1 96 GLN n 1 97 LYS n 1 98 CYS n 1 99 ASP n 1 100 SER n 1 101 ALA n 1 102 ASN n 1 103 HIS n 1 104 ASN n 1 105 VAL n 1 106 THR n 1 107 ASP n 1 108 SER n 1 109 CYS n 1 110 GLY n 1 111 THR n 1 112 GLU n 1 113 LEU n 1 114 LEU n 1 115 VAL n 1 116 LEU n 1 117 GLY n 1 118 PHE n 1 119 SER n 1 120 THR n 1 121 LEU n 1 122 ASP n 1 123 GLN n 1 124 LEU n 1 125 LYS n 1 126 ARG n 1 127 ARG n 1 128 ASN n 1 129 THR n 1 130 LEU n 1 131 LYS n 1 132 ASP n 1 133 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name mouse _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'Cd79b, Igb' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Mus musculus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10090 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CD79B_MOUSE _struct_ref.pdbx_db_accession P15530 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PAMTSSDLPLNFQGSPCSQIWQHPRFAAKKRSSMVKFHCYTNHSGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLT IQNIQYEDNGIYFCKQKCDSANHNVTDSCGTELLVLGFSTLDQLKRRNTLKDG ; _struct_ref.pdbx_align_begin 27 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KHQ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 133 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P15530 _struct_ref_seq.db_align_beg 27 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 159 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 27 _struct_ref_seq.pdbx_auth_seq_align_end 159 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FLC non-polymer . 'CITRATE ANION' ? 'C6 H5 O7 -3' 189.100 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GSH non-polymer . GLUTATHIONE ? 'C10 H17 N3 O6 S' 307.323 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KHQ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.62 _exptl_crystal.density_percent_sol 23.89 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.0 _exptl_crystal_grow.pdbx_details '20% Peg 750 MME, 0.2M MgCl2, 100mM Na Citrate, pH 5.0, VAPOR DIFFUSION, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'SI(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 3KHQ _reflns.observed_criterion_sigma_I -3.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.7 _reflns.number_obs 10471 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.065 _reflns.pdbx_netI_over_sigmaI 21.5 _reflns.B_iso_Wilson_estimate 20.6 _reflns.pdbx_redundancy 5.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.7 _reflns_shell.d_res_low 1.74 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.317 _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 2.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 3KHQ _refine.ls_number_reflns_obs 10071 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.87 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 93.75 _refine.ls_R_factor_obs 0.18758 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.187 _refine.ls_R_factor_R_free 0.197 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 515 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.964 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.B_iso_mean 31.694 _refine.aniso_B[1][1] -0.96 _refine.aniso_B[2][2] 1.54 _refine.aniso_B[3][3] -0.58 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.117 _refine.pdbx_overall_ESU_R_Free 0.101 _refine.overall_SU_ML 0.068 _refine.overall_SU_B 2.114 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 752 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 34 _refine_hist.number_atoms_solvent 58 _refine_hist.number_atoms_total 844 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 39.87 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 799 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 550 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.183 1.947 ? 1069 'X-RAY DIFFRACTION' ? r_angle_other_deg 2.530 3.006 ? 1329 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.724 5.000 ? 91 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 34.963 24.103 ? 39 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 11.740 15.000 ? 142 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.123 15.000 ? 5 'X-RAY DIFFRACTION' ? r_chiral_restr 0.246 0.200 ? 112 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.006 0.020 ? 866 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.001 0.020 ? 161 'X-RAY DIFFRACTION' ? r_nbd_refined 0.261 0.200 ? 125 'X-RAY DIFFRACTION' ? r_nbd_other 0.277 0.200 ? 536 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.192 0.200 ? 366 'X-RAY DIFFRACTION' ? r_nbtor_other 0.091 0.200 ? 438 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.225 0.200 ? 35 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.220 0.200 ? 9 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.255 0.200 ? 20 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.132 0.200 ? 8 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 10.383 4.000 ? 606 'X-RAY DIFFRACTION' ? r_mcbond_other 2.428 4.000 ? 191 'X-RAY DIFFRACTION' ? r_mcangle_it 10.000 6.000 ? 748 'X-RAY DIFFRACTION' ? r_scbond_it 13.477 4.000 ? 396 'X-RAY DIFFRACTION' ? r_scangle_it 16.397 6.000 ? 321 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.number_reflns_R_work 382 _refine_ls_shell.R_factor_R_work 0.270 _refine_ls_shell.percent_reflns_obs 51.27 _refine_ls_shell.R_factor_R_free 0.290 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 22 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KHQ _struct.title 'Crystal structure of murine Ig-beta (CD79b) in the monomeric form' _struct.pdbx_descriptor 'B-cell antigen receptor complex-associated protein beta chain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KHQ _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'CD79b, CD79a, Ig-beta, BCR, Ig domain, V-set, Immunoglobulin domain, PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id GLN _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 85 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id ASN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 89 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id GLN _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 111 _struct_conf.end_auth_comp_id ASN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 115 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 17 SG ? ? ? 1_555 A CYS 109 SG ? ? A CYS 43 A CYS 135 1_555 ? ? ? ? ? ? ? 2.033 ? disulf2 disulf ? ? A CYS 39 SG ? ? ? 1_555 A CYS 94 SG ? ? A CYS 65 A CYS 120 1_555 ? ? ? ? ? ? ? 2.038 ? metalc1 metalc ? ? A GLU 112 OE1 ? ? ? 1_555 B MG . MG ? ? A GLU 138 A MG 1 1_555 ? ? ? ? ? ? ? 2.156 ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1 A HOH 172 1_555 ? ? ? ? ? ? ? 2.048 ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 C FLC . OB1 ? ? A MG 1 A FLC 800 1_555 ? ? ? ? ? ? ? 2.140 ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 C FLC . OG1 ? ? A MG 1 A FLC 800 1_555 ? ? ? ? ? ? ? 2.157 ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 C FLC . OHB ? ? A MG 1 A FLC 800 1_555 ? ? ? ? ? ? ? 2.192 ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1 A HOH 171 1_555 ? ? ? ? ? ? ? 2.108 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 23 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 49 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 24 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 50 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 20 ? HIS A 23 ? ILE A 46 HIS A 49 A 2 VAL A 35 ? THR A 41 ? VAL A 61 THR A 67 A 3 VAL A 76 ? ILE A 81 ? VAL A 102 ILE A 107 A 4 ILE A 68 ? ASN A 73 ? ILE A 94 ASN A 99 B 1 PHE A 26 ? LYS A 30 ? PHE A 52 LYS A 56 B 2 THR A 111 ? LEU A 116 ? THR A 137 LEU A 142 B 3 GLY A 90 ? GLN A 96 ? GLY A 116 GLN A 122 B 4 LEU A 47 ? LYS A 52 ? LEU A 73 LYS A 78 B 5 GLN A 59 ? GLU A 60 ? GLN A 85 GLU A 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N HIS A 23 ? N HIS A 49 O HIS A 38 ? O HIS A 64 A 2 3 N CYS A 39 ? N CYS A 65 O TYR A 77 ? O TYR A 103 A 3 4 O VAL A 76 ? O VAL A 102 N ASN A 73 ? N ASN A 99 B 1 2 N LYS A 29 ? N LYS A 55 O LEU A 116 ? O LEU A 142 B 2 3 O THR A 111 ? O THR A 137 N TYR A 92 ? N TYR A 118 B 3 4 O PHE A 93 ? O PHE A 119 N PHE A 50 ? N PHE A 76 B 4 5 N ARG A 51 ? N ARG A 77 O GLN A 59 ? O GLN A 85 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG A 1' AC2 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE FLC A 800' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE GSH A 900' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 112 ? GLU A 138 . ? 1_555 ? 2 AC1 4 HOH E . ? HOH A 171 . ? 1_555 ? 3 AC1 4 HOH E . ? HOH A 172 . ? 1_555 ? 4 AC1 4 FLC C . ? FLC A 800 . ? 1_555 ? 5 AC2 12 MG B . ? MG A 1 . ? 1_555 ? 6 AC2 12 HOH E . ? HOH A 11 . ? 4_456 ? 7 AC2 12 ARG A 25 ? ARG A 51 . ? 1_555 ? 8 AC2 12 PHE A 26 ? PHE A 52 . ? 1_555 ? 9 AC2 12 LYS A 36 ? LYS A 62 . ? 4_456 ? 10 AC2 12 HIS A 38 ? HIS A 64 . ? 4_456 ? 11 AC2 12 GLY A 110 ? GLY A 136 . ? 1_555 ? 12 AC2 12 GLU A 112 ? GLU A 138 . ? 1_555 ? 13 AC2 12 HOH E . ? HOH A 171 . ? 1_555 ? 14 AC2 12 HOH E . ? HOH A 172 . ? 1_555 ? 15 AC2 12 HOH E . ? HOH A 180 . ? 1_555 ? 16 AC2 12 HOH E . ? HOH A 211 . ? 4_456 ? 17 AC3 5 SER A 55 ? SER A 81 . ? 2_555 ? 18 AC3 5 THR A 71 ? THR A 97 . ? 2_655 ? 19 AC3 5 GLN A 72 ? GLN A 98 . ? 2_655 ? 20 AC3 5 CYS A 98 ? CYS A 124 . ? 1_555 ? 21 AC3 5 HOH E . ? HOH A 181 . ? 2_555 ? # _database_PDB_matrix.entry_id 3KHQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KHQ _atom_sites.fract_transf_matrix[1][1] 0.028065 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012544 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.029137 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 27 ? ? ? A . n A 1 2 ALA 2 28 ? ? ? A . n A 1 3 MET 3 29 ? ? ? A . n A 1 4 THR 4 30 ? ? ? A . n A 1 5 SER 5 31 ? ? ? A . n A 1 6 SER 6 32 ? ? ? A . n A 1 7 ASP 7 33 ? ? ? A . n A 1 8 LEU 8 34 ? ? ? A . n A 1 9 PRO 9 35 ? ? ? A . n A 1 10 LEU 10 36 ? ? ? A . n A 1 11 ASN 11 37 ? ? ? A . n A 1 12 PHE 12 38 ? ? ? A . n A 1 13 GLN 13 39 ? ? ? A . n A 1 14 GLY 14 40 ? ? ? A . n A 1 15 SER 15 41 ? ? ? A . n A 1 16 PRO 16 42 ? ? ? A . n A 1 17 CYS 17 43 43 CYS CYS A . n A 1 18 SER 18 44 44 SER SER A . n A 1 19 GLN 19 45 45 GLN GLN A . n A 1 20 ILE 20 46 46 ILE ILE A . n A 1 21 TRP 21 47 47 TRP TRP A . n A 1 22 GLN 22 48 48 GLN GLN A . n A 1 23 HIS 23 49 49 HIS HIS A . n A 1 24 PRO 24 50 50 PRO PRO A . n A 1 25 ARG 25 51 51 ARG ARG A . n A 1 26 PHE 26 52 52 PHE PHE A . n A 1 27 ALA 27 53 53 ALA ALA A . n A 1 28 ALA 28 54 54 ALA ALA A . n A 1 29 LYS 29 55 55 LYS LYS A . n A 1 30 LYS 30 56 56 LYS LYS A . n A 1 31 ARG 31 57 57 ARG ARG A . n A 1 32 SER 32 58 58 SER SER A . n A 1 33 SER 33 59 59 SER SER A . n A 1 34 MET 34 60 60 MET MET A . n A 1 35 VAL 35 61 61 VAL VAL A . n A 1 36 LYS 36 62 62 LYS LYS A . n A 1 37 PHE 37 63 63 PHE PHE A . n A 1 38 HIS 38 64 64 HIS HIS A . n A 1 39 CYS 39 65 65 CYS CYS A . n A 1 40 TYR 40 66 66 TYR TYR A . n A 1 41 THR 41 67 67 THR THR A . n A 1 42 ASN 42 68 68 ASN ASN A . n A 1 43 HIS 43 69 69 HIS HIS A . n A 1 44 SER 44 70 70 SER SER A . n A 1 45 GLY 45 71 71 GLY GLY A . n A 1 46 ALA 46 72 72 ALA ALA A . n A 1 47 LEU 47 73 73 LEU LEU A . n A 1 48 THR 48 74 74 THR THR A . n A 1 49 TRP 49 75 75 TRP TRP A . n A 1 50 PHE 50 76 76 PHE PHE A . n A 1 51 ARG 51 77 77 ARG ARG A . n A 1 52 LYS 52 78 78 LYS LYS A . n A 1 53 ARG 53 79 79 ARG ARG A . n A 1 54 GLY 54 80 80 GLY GLY A . n A 1 55 SER 55 81 81 SER SER A . n A 1 56 GLN 56 82 82 GLN GLN A . n A 1 57 GLN 57 83 83 GLN GLN A . n A 1 58 PRO 58 84 84 PRO PRO A . n A 1 59 GLN 59 85 85 GLN GLN A . n A 1 60 GLU 60 86 86 GLU GLU A . n A 1 61 LEU 61 87 87 LEU LEU A . n A 1 62 VAL 62 88 88 VAL VAL A . n A 1 63 SER 63 89 89 SER SER A . n A 1 64 GLU 64 90 90 GLU GLU A . n A 1 65 GLU 65 91 91 GLU GLU A . n A 1 66 GLY 66 92 92 GLY GLY A . n A 1 67 ARG 67 93 93 ARG ARG A . n A 1 68 ILE 68 94 94 ILE ILE A . n A 1 69 VAL 69 95 95 VAL VAL A . n A 1 70 GLN 70 96 96 GLN GLN A . n A 1 71 THR 71 97 97 THR THR A . n A 1 72 GLN 72 98 98 GLN GLN A . n A 1 73 ASN 73 99 99 ASN ASN A . n A 1 74 GLY 74 100 100 GLY GLY A . n A 1 75 SER 75 101 101 SER SER A . n A 1 76 VAL 76 102 102 VAL VAL A . n A 1 77 TYR 77 103 103 TYR TYR A . n A 1 78 THR 78 104 104 THR THR A . n A 1 79 LEU 79 105 105 LEU LEU A . n A 1 80 THR 80 106 106 THR THR A . n A 1 81 ILE 81 107 107 ILE ILE A . n A 1 82 GLN 82 108 108 GLN GLN A . n A 1 83 ASN 83 109 109 ASN ASN A . n A 1 84 ILE 84 110 110 ILE ILE A . n A 1 85 GLN 85 111 111 GLN GLN A . n A 1 86 TYR 86 112 112 TYR TYR A . n A 1 87 GLU 87 113 113 GLU GLU A . n A 1 88 ASP 88 114 114 ASP ASP A . n A 1 89 ASN 89 115 115 ASN ASN A . n A 1 90 GLY 90 116 116 GLY GLY A . n A 1 91 ILE 91 117 117 ILE ILE A . n A 1 92 TYR 92 118 118 TYR TYR A . n A 1 93 PHE 93 119 119 PHE PHE A . n A 1 94 CYS 94 120 120 CYS CYS A . n A 1 95 LYS 95 121 121 LYS LYS A . n A 1 96 GLN 96 122 122 GLN GLN A . n A 1 97 LYS 97 123 123 LYS LYS A . n A 1 98 CYS 98 124 124 CYS CYS A . n A 1 99 ASP 99 125 125 ASP ASP A . n A 1 100 SER 100 126 126 SER SER A . n A 1 101 ALA 101 127 ? ? ? A . n A 1 102 ASN 102 128 ? ? ? A . n A 1 103 HIS 103 129 ? ? ? A . n A 1 104 ASN 104 130 ? ? ? A . n A 1 105 VAL 105 131 ? ? ? A . n A 1 106 THR 106 132 ? ? ? A . n A 1 107 ASP 107 133 ? ? ? A . n A 1 108 SER 108 134 134 SER SER A . n A 1 109 CYS 109 135 135 CYS CYS A . n A 1 110 GLY 110 136 136 GLY GLY A . n A 1 111 THR 111 137 137 THR THR A . n A 1 112 GLU 112 138 138 GLU GLU A . n A 1 113 LEU 113 139 139 LEU LEU A . n A 1 114 LEU 114 140 140 LEU LEU A . n A 1 115 VAL 115 141 141 VAL VAL A . n A 1 116 LEU 116 142 142 LEU LEU A . n A 1 117 GLY 117 143 ? ? ? A . n A 1 118 PHE 118 144 ? ? ? A . n A 1 119 SER 119 145 ? ? ? A . n A 1 120 THR 120 146 ? ? ? A . n A 1 121 LEU 121 147 ? ? ? A . n A 1 122 ASP 122 148 ? ? ? A . n A 1 123 GLN 123 149 ? ? ? A . n A 1 124 LEU 124 150 ? ? ? A . n A 1 125 LYS 125 151 ? ? ? A . n A 1 126 ARG 126 152 ? ? ? A . n A 1 127 ARG 127 153 ? ? ? A . n A 1 128 ASN 128 154 ? ? ? A . n A 1 129 THR 129 155 ? ? ? A . n A 1 130 LEU 130 156 ? ? ? A . n A 1 131 LYS 131 157 ? ? ? A . n A 1 132 ASP 132 158 ? ? ? A . n A 1 133 GLY 133 159 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 1 1 MG MG A . C 3 FLC 1 800 800 FLC FLC A . D 4 GSH 1 900 900 GSH GSH A . E 5 HOH 1 3 3 HOH HOH A . E 5 HOH 2 5 5 HOH HOH A . E 5 HOH 3 6 6 HOH HOH A . E 5 HOH 4 7 7 HOH HOH A . E 5 HOH 5 8 8 HOH HOH A . E 5 HOH 6 10 10 HOH HOH A . E 5 HOH 7 11 11 HOH HOH A . E 5 HOH 8 12 12 HOH HOH A . E 5 HOH 9 13 13 HOH HOH A . E 5 HOH 10 14 14 HOH HOH A . E 5 HOH 11 15 15 HOH HOH A . E 5 HOH 12 16 16 HOH HOH A . E 5 HOH 13 18 18 HOH HOH A . E 5 HOH 14 19 19 HOH HOH A . E 5 HOH 15 20 20 HOH HOH A . E 5 HOH 16 21 21 HOH HOH A . E 5 HOH 17 23 23 HOH HOH A . E 5 HOH 18 160 27 HOH HOH A . E 5 HOH 19 161 28 HOH HOH A . E 5 HOH 20 162 29 HOH HOH A . E 5 HOH 21 163 30 HOH HOH A . E 5 HOH 22 164 31 HOH HOH A . E 5 HOH 23 165 32 HOH HOH A . E 5 HOH 24 166 34 HOH HOH A . E 5 HOH 25 167 37 HOH HOH A . E 5 HOH 26 168 39 HOH HOH A . E 5 HOH 27 169 40 HOH HOH A . E 5 HOH 28 170 42 HOH HOH A . E 5 HOH 29 171 50 HOH HOH A . E 5 HOH 30 172 51 HOH HOH A . E 5 HOH 31 173 102 HOH HOH A . E 5 HOH 32 174 103 HOH HOH A . E 5 HOH 33 175 106 HOH HOH A . E 5 HOH 34 176 107 HOH HOH A . E 5 HOH 35 177 143 HOH HOH A . E 5 HOH 36 178 144 HOH HOH A . E 5 HOH 37 179 145 HOH HOH A . E 5 HOH 38 180 124 HOH HOH A . E 5 HOH 39 181 125 HOH HOH A . E 5 HOH 40 201 201 HOH HOH A . E 5 HOH 41 203 203 HOH HOH A . E 5 HOH 42 205 205 HOH HOH A . E 5 HOH 43 210 210 HOH HOH A . E 5 HOH 44 211 211 HOH HOH A . E 5 HOH 45 212 212 HOH HOH A . E 5 HOH 46 213 213 HOH HOH A . E 5 HOH 47 214 214 HOH HOH A . E 5 HOH 48 215 215 HOH HOH A . E 5 HOH 49 217 217 HOH HOH A . E 5 HOH 50 218 218 HOH HOH A . E 5 HOH 51 222 222 HOH HOH A . E 5 HOH 52 223 223 HOH HOH A . E 5 HOH 53 224 224 HOH HOH A . E 5 HOH 54 225 225 HOH HOH A . E 5 HOH 55 226 226 HOH HOH A . E 5 HOH 56 227 227 HOH HOH A . E 5 HOH 57 228 228 HOH HOH A . E 5 HOH 58 229 229 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 112 ? A GLU 138 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 O ? E HOH . ? A HOH 172 ? 1_555 97.5 ? 2 OE1 ? A GLU 112 ? A GLU 138 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OB1 ? C FLC . ? A FLC 800 ? 1_555 164.1 ? 3 O ? E HOH . ? A HOH 172 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OB1 ? C FLC . ? A FLC 800 ? 1_555 89.6 ? 4 OE1 ? A GLU 112 ? A GLU 138 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OG1 ? C FLC . ? A FLC 800 ? 1_555 88.5 ? 5 O ? E HOH . ? A HOH 172 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OG1 ? C FLC . ? A FLC 800 ? 1_555 171.9 ? 6 OB1 ? C FLC . ? A FLC 800 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OG1 ? C FLC . ? A FLC 800 ? 1_555 83.2 ? 7 OE1 ? A GLU 112 ? A GLU 138 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OHB ? C FLC . ? A FLC 800 ? 1_555 92.5 ? 8 O ? E HOH . ? A HOH 172 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OHB ? C FLC . ? A FLC 800 ? 1_555 95.9 ? 9 OB1 ? C FLC . ? A FLC 800 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OHB ? C FLC . ? A FLC 800 ? 1_555 72.6 ? 10 OG1 ? C FLC . ? A FLC 800 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 OHB ? C FLC . ? A FLC 800 ? 1_555 78.4 ? 11 OE1 ? A GLU 112 ? A GLU 138 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 O ? E HOH . ? A HOH 171 ? 1_555 94.7 ? 12 O ? E HOH . ? A HOH 172 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 O ? E HOH . ? A HOH 171 ? 1_555 95.6 ? 13 OB1 ? C FLC . ? A FLC 800 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 O ? E HOH . ? A HOH 171 ? 1_555 98.7 ? 14 OG1 ? C FLC . ? A FLC 800 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 O ? E HOH . ? A HOH 171 ? 1_555 89.3 ? 15 OHB ? C FLC . ? A FLC 800 ? 1_555 MG ? B MG . ? A MG 1 ? 1_555 O ? E HOH . ? A HOH 171 ? 1_555 165.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-08-25 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2011-12-14 4 'Structure model' 1 3 2019-07-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 2 4 'Structure model' software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 4 'Structure model' '_software.version' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A SER 70 ? B O A HOH 215 ? ? 1.94 2 1 OE1 A GLN 98 ? ? O A HOH 223 ? ? 2.14 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG1 _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 110 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 B _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ILE _pdbx_validate_rmsd_angle.auth_seq_id_2 110 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ILE _pdbx_validate_rmsd_angle.auth_seq_id_3 110 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 B _pdbx_validate_rmsd_angle.angle_value 124.76 _pdbx_validate_rmsd_angle.angle_target_value 111.40 _pdbx_validate_rmsd_angle.angle_deviation 13.36 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.20 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 44 ? ? -99.06 -108.96 2 1 SER A 58 ? ? 84.98 -9.80 3 1 ASN A 99 ? ? -115.46 77.29 # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id CB _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id ILE _pdbx_validate_chiral.auth_seq_id 110 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 27 ? A PRO 1 2 1 Y 1 A ALA 28 ? A ALA 2 3 1 Y 1 A MET 29 ? A MET 3 4 1 Y 1 A THR 30 ? A THR 4 5 1 Y 1 A SER 31 ? A SER 5 6 1 Y 1 A SER 32 ? A SER 6 7 1 Y 1 A ASP 33 ? A ASP 7 8 1 Y 1 A LEU 34 ? A LEU 8 9 1 Y 1 A PRO 35 ? A PRO 9 10 1 Y 1 A LEU 36 ? A LEU 10 11 1 Y 1 A ASN 37 ? A ASN 11 12 1 Y 1 A PHE 38 ? A PHE 12 13 1 Y 1 A GLN 39 ? A GLN 13 14 1 Y 1 A GLY 40 ? A GLY 14 15 1 Y 1 A SER 41 ? A SER 15 16 1 Y 1 A PRO 42 ? A PRO 16 17 1 Y 1 A ALA 127 ? A ALA 101 18 1 Y 1 A ASN 128 ? A ASN 102 19 1 Y 1 A HIS 129 ? A HIS 103 20 1 Y 1 A ASN 130 ? A ASN 104 21 1 Y 1 A VAL 131 ? A VAL 105 22 1 Y 1 A THR 132 ? A THR 106 23 1 Y 1 A ASP 133 ? A ASP 107 24 1 Y 1 A GLY 143 ? A GLY 117 25 1 Y 1 A PHE 144 ? A PHE 118 26 1 Y 1 A SER 145 ? A SER 119 27 1 Y 1 A THR 146 ? A THR 120 28 1 Y 1 A LEU 147 ? A LEU 121 29 1 Y 1 A ASP 148 ? A ASP 122 30 1 Y 1 A GLN 149 ? A GLN 123 31 1 Y 1 A LEU 150 ? A LEU 124 32 1 Y 1 A LYS 151 ? A LYS 125 33 1 Y 1 A ARG 152 ? A ARG 126 34 1 Y 1 A ARG 153 ? A ARG 127 35 1 Y 1 A ASN 154 ? A ASN 128 36 1 Y 1 A THR 155 ? A THR 129 37 1 Y 1 A LEU 156 ? A LEU 130 38 1 Y 1 A LYS 157 ? A LYS 131 39 1 Y 1 A ASP 158 ? A ASP 132 40 1 Y 1 A GLY 159 ? A GLY 133 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CITRATE ANION' FLC 4 GLUTATHIONE GSH 5 water HOH #