HEADER MOTOR PROTEIN 25-AUG-97 3KIN TITLE KINESIN (DIMERIC) FROM RATTUS NORVEGICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINESIN HEAVY CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: MOTOR DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: KINESIN HEAVY CHAIN; COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: MOTOR DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: BRAIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: NORWAY RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 ORGAN: BRAIN; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MOTOR PROTEIN, CYTOSKELETON EXPDTA X-RAY DIFFRACTION AUTHOR F.KOZIELSKI,S.SACK,A.MARX,M.THORMAHLEN,E.SCHONBRUNN,V.BIOU, AUTHOR 2 A.THOMPSON,E.-M.MANDELKOW,E.MANDELKOW REVDAT 3 28-APR-09 3KIN 1 DBREF REVDAT 2 24-FEB-09 3KIN 1 VERSN REVDAT 1 14-OCT-98 3KIN 0 JRNL AUTH F.KOZIELSKI,S.SACK,A.MARX,M.THORMAHLEN, JRNL AUTH 2 E.SCHONBRUNN,V.BIOU,A.THOMPSON,E.M.MANDELKOW, JRNL AUTH 3 E.MANDELKOW JRNL TITL THE CRYSTAL STRUCTURE OF DIMERIC KINESIN AND JRNL TITL 2 IMPLICATIONS FOR MICROTUBULE-DEPENDENT MOTILITY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 91 985 1997 JRNL REFN ISSN 0092-8674 JRNL PMID 9428521 JRNL DOI 10.1016/S0092-8674(00)80489-4 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.KOZIELSKI,E.SCHONBRUNN,S.SACK,J.MULLER,S.T.BRADY, REMARK 1 AUTH 2 E.MANDELKOW REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 THE SINGLE-HEADED AND DOUBLE-HEADED MOTOR PROTEIN REMARK 1 TITL 3 KINESIN REMARK 1 REF J.STRUCT.BIOL. V. 119 28 1997 REMARK 1 REFN ISSN 1047-8477 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.SACK,J.MULLER,A.MARX,M.THORMAHLEN,E.M.MANDELKOW, REMARK 1 AUTH 2 S.T.BRADY,E.MANDELKOW REMARK 1 TITL X-RAY STRUCTURE OF MOTOR AND NECK DOMAINS FROM RAT REMARK 1 TITL 2 BRAIN KINESIN REMARK 1 REF BIOCHEMISTRY V. 36 16155 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.289 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : 0.362 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1491 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5629 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 60 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KIN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUL-96 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19516 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HANGING DROP METHOD WAS USED. REMARK 280 PROTEIN WAS CRYSTALLIZED FROM 20MM PIPES, PH 7.5, 200MM NACL, REMARK 280 2MM DTT, 2 MM NA-EGTA, 0.8 M AS. THE RESERVOIR CONTAINED 1.6 M REMARK 280 AS IN THE SAME BUFFER., VAPOR DIFFUSION - HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.07500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.84000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.84000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.07500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -100.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -36.07500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.85000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 -70.84000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG D 371 REMARK 465 ASN D 372 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB SER B 291 O HOH B 15 0.34 REMARK 500 N THR A 170 O HOH A 405 0.64 REMARK 500 O ASN B 368 N ASN B 372 0.82 REMARK 500 O ASN B 368 CA ASN B 372 0.89 REMARK 500 N TYR A 63 O HOH A 406 0.92 REMARK 500 C CYS A 169 O HOH A 405 1.04 REMARK 500 O GLY C 80 O HOH C 404 1.36 REMARK 500 C ASN B 368 CA ASN B 372 1.39 REMARK 500 CE1 HIS A 206 O HOH A 403 1.39 REMARK 500 CA SER B 291 O HOH B 15 1.43 REMARK 500 CA THR A 170 O HOH A 405 1.45 REMARK 500 OE2 GLU B 366 CZ3 TRP B 370 1.49 REMARK 500 OD1 ASP A 102 O HOH A 418 1.49 REMARK 500 OG SER B 291 O HOH B 15 1.55 REMARK 500 O ARG B 369 ND2 ASN B 372 1.59 REMARK 500 OE2 GLU A 200 NH2 ARG A 204 1.61 REMARK 500 O GLU B 366 N TRP B 370 1.61 REMARK 500 O LYS C 227 O HOH C 404 1.62 REMARK 500 NE2 HIS A 206 O HOH A 403 1.63 REMARK 500 OG SER D 258 O HOH D 56 1.66 REMARK 500 O CYS A 169 O HOH A 405 1.70 REMARK 500 C VAL A 62 O HOH A 406 1.73 REMARK 500 N ALA A 2 NZ LYS D 350 1.73 REMARK 500 C ASN B 368 C ASN B 372 1.73 REMARK 500 CB LEU B 259 O HOH B 31 1.74 REMARK 500 OE2 GLU A 200 CZ ARG A 204 1.75 REMARK 500 OG SER A 8 NZ LYS B 328 1.76 REMARK 500 CE LYS A 160 OE1 GLU C 221 1.78 REMARK 500 NZ LYS A 160 OE1 GLU C 221 1.78 REMARK 500 O TYR B 279 OG1 THR B 285 1.79 REMARK 500 O LEU A 75 NE2 GLN A 215 1.83 REMARK 500 OE2 GLU D 340 O HOH D 32 1.88 REMARK 500 NH2 ARG C 204 OE2 GLU C 237 1.89 REMARK 500 OE2 GLU B 366 CE3 TRP B 370 1.89 REMARK 500 O ASN B 368 C ARG B 371 1.91 REMARK 500 CE MET A 96 O VAL A 231 1.91 REMARK 500 OE2 GLU C 137 NE ARG C 144 1.91 REMARK 500 O ASN A 199 OG SER A 203 1.94 REMARK 500 CB ASN B 368 C ASN B 372 1.96 REMARK 500 OE2 GLU A 200 NH1 ARG A 204 1.98 REMARK 500 OE1 GLU B 364 CD2 LEU D 363 1.99 REMARK 500 CA ASN B 368 C ASN B 372 2.01 REMARK 500 O PHE C 117 CD2 TYR C 121 2.01 REMARK 500 O VAL B 365 N ARG B 369 2.01 REMARK 500 O ARG A 204 O HOH A 407 2.02 REMARK 500 N VAL A 62 O HOH A 406 2.02 REMARK 500 CE1 HIS A 157 NZ LYS A 167 2.05 REMARK 500 O GLU A 60 O HOH A 406 2.07 REMARK 500 OG SER A 134 O HOH A 416 2.07 REMARK 500 OE1 GLU C 37 O ASP C 50 2.07 REMARK 500 REMARK 500 THIS ENTRY HAS 73 CLOSE CONTACTS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C MET B 319 NH2 ARG B 371 3556 1.48 REMARK 500 OH TYR A 47 O ASN B 372 3556 1.53 REMARK 500 O MET B 319 NH2 ARG B 371 3556 1.60 REMARK 500 SD MET B 319 NE ARG B 371 3556 1.61 REMARK 500 CB MET B 319 NH2 ARG B 371 3556 1.64 REMARK 500 CA MET B 319 NH2 ARG B 371 3556 1.72 REMARK 500 OD2 ASP A 124 N6 ADP A 401 4456 1.81 REMARK 500 SD MET B 319 CD ARG B 371 3556 1.82 REMARK 500 SD MET B 319 CG ARG B 371 3556 1.94 REMARK 500 CE MET B 319 CG ARG B 371 3556 2.10 REMARK 500 CB MET B 319 CZ ARG B 371 3556 2.10 REMARK 500 OE1 GLN A 104 CG2 VAL A 218 4556 2.11 REMARK 500 NH2 ARG B 323 CD1 TRP D 370 3556 2.13 REMARK 500 CG GLU B 271 CZ2 TRP D 370 3556 2.14 REMARK 500 CB LYS A 45 OD1 ASN B 372 3556 2.17 REMARK 500 OD2 ASP A 124 C6 ADP A 401 4456 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 371 C ARG B 371 O 0.210 REMARK 500 ASN B 372 N ASN B 372 CA 0.211 REMARK 500 ASN B 372 CA ASN B 372 CB 0.192 REMARK 500 ASN B 372 C ASN B 372 O 1.247 REMARK 500 ALA C 2 CA ALA C 2 CB 0.471 REMARK 500 ALA C 2 C ALA C 2 O 0.243 REMARK 500 ASP C 3 N ASP C 3 CA 0.128 REMARK 500 ASP C 3 CA ASP C 3 CB 0.183 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 83 CA - CB - CG ANGL. DEV. = 18.7 DEGREES REMARK 500 ARG A 162 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASN B 372 CB - CA - C ANGL. DEV. = 15.7 DEGREES REMARK 500 ASN B 372 N - CA - CB ANGL. DEV. = -14.4 DEGREES REMARK 500 ASN B 372 CA - C - O ANGL. DEV. = -34.6 DEGREES REMARK 500 ARG B 371 CA - C - N ANGL. DEV. = -14.5 DEGREES REMARK 500 ARG B 371 O - C - N ANGL. DEV. = 17.4 DEGREES REMARK 500 ALA C 2 CB - CA - C ANGL. DEV. = -20.9 DEGREES REMARK 500 ALA C 2 N - CA - C ANGL. DEV. = 32.7 DEGREES REMARK 500 ASP C 3 CB - CA - C ANGL. DEV. = -19.6 DEGREES REMARK 500 ASP C 3 N - CA - CB ANGL. DEV. = -13.9 DEGREES REMARK 500 ASP C 3 N - CA - C ANGL. DEV. = 41.1 DEGREES REMARK 500 ALA C 2 CA - C - N ANGL. DEV. = 21.3 DEGREES REMARK 500 ALA C 2 O - C - N ANGL. DEV. = -21.5 DEGREES REMARK 500 ARG C 14 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG C 14 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG C 204 CD - NE - CZ ANGL. DEV. = 12.9 DEGREES REMARK 500 CYS D 296 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 7 116.77 -164.31 REMARK 500 GLU A 20 -54.84 -27.83 REMARK 500 ARG A 25 2.31 -68.92 REMARK 500 GLU A 37 12.34 -148.33 REMARK 500 SER A 89 -4.30 83.42 REMARK 500 THR A 95 -78.22 -64.02 REMARK 500 LEU A 100 -36.10 -19.53 REMARK 500 LEU A 140 61.60 39.34 REMARK 500 ASP A 148 83.06 -152.20 REMARK 500 HIS A 157 -166.39 -107.32 REMARK 500 ASN A 161 60.71 -106.85 REMARK 500 TYR A 165 146.75 -172.02 REMARK 500 SER A 175 23.36 -144.89 REMARK 500 ASN A 190 -27.92 -36.28 REMARK 500 VAL A 193 113.55 -36.99 REMARK 500 ALA A 194 12.29 84.37 REMARK 500 SER A 203 -16.55 -38.18 REMARK 500 GLU A 219 -78.67 -73.09 REMARK 500 GLU A 221 -2.23 66.79 REMARK 500 LYS A 238 -163.49 -75.07 REMARK 500 LYS B 274 49.91 14.19 REMARK 500 PRO B 278 67.58 -60.97 REMARK 500 ASN B 295 91.95 -65.49 REMARK 500 CYS B 296 150.74 173.28 REMARK 500 GLU B 349 18.25 -65.13 REMARK 500 HIS B 362 -75.10 -71.99 REMARK 500 GLU B 366 -74.81 -50.45 REMARK 500 CYS C 7 115.14 149.71 REMARK 500 ILE C 23 -72.16 -34.84 REMARK 500 ASP C 73 -71.59 -45.14 REMARK 500 LEU C 105 31.20 -99.27 REMARK 500 HIS C 130 95.69 -165.63 REMARK 500 ASP C 141 3.45 49.09 REMARK 500 ASP C 148 92.56 -175.82 REMARK 500 THR C 152 -9.43 -144.58 REMARK 500 HIS C 157 -163.93 -115.63 REMARK 500 ASN C 161 31.27 -93.73 REMARK 500 TYR C 165 144.03 177.09 REMARK 500 SER C 176 147.45 176.49 REMARK 500 ARG C 191 -12.75 -39.71 REMARK 500 ALA C 194 -2.00 78.99 REMARK 500 THR C 196 -82.45 -75.23 REMARK 500 HIS C 201 -71.94 -34.98 REMARK 500 GLU C 221 -42.36 71.14 REMARK 500 LYS C 222 120.17 -20.86 REMARK 500 LYS D 257 -76.73 -38.06 REMARK 500 LYS D 274 98.50 10.98 REMARK 500 THR D 275 94.71 160.46 REMARK 500 ASP D 281 -9.41 -56.11 REMARK 500 LEU D 288 29.53 -79.65 REMARK 500 ASN D 295 81.81 -69.28 REMARK 500 CYS D 296 128.03 -171.00 REMARK 500 GLU D 340 12.63 -62.01 REMARK 500 ILE D 360 -64.67 -93.87 REMARK 500 GLN D 361 -69.24 -29.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP C 3 -12.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN B 372 24.1 L L OUTSIDE RANGE REMARK 500 ALA C 2 16.1 L L OUTSIDE RANGE REMARK 500 ASP C 3 17.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 404 DISTANCE = 5.03 ANGSTROMS REMARK 525 HOH C 417 DISTANCE = 6.41 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP C 400 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 401 DBREF 3KIN A 2 239 PDB 3KIN 3KIN 2 239 DBREF 3KIN B 256 372 PDB 3KIN 3KIN 256 372 DBREF 3KIN C 2 239 PDB 3KIN 3KIN 2 239 DBREF 3KIN D 256 370 PDB 3KIN 3KIN 256 370 SEQRES 1 A 238 ALA ASP PRO ALA GLU CYS SER ILE LYS VAL MET CYS ARG SEQRES 2 A 238 PHE ARG PRO LEU ASN GLU ALA GLU ILE LEU ARG GLY ASP SEQRES 3 A 238 LYS PHE ILE PRO LYS PHE LYS GLY GLU GLU THR VAL VAL SEQRES 4 A 238 ILE GLY GLN GLY LYS PRO TYR VAL PHE ASP ARG VAL LEU SEQRES 5 A 238 PRO PRO ASN THR THR GLN GLU GLN VAL TYR ASN ALA CYS SEQRES 6 A 238 ALA LYS GLN ILE VAL LYS ASP VAL LEU GLU GLY TYR ASN SEQRES 7 A 238 GLY THR ILE PHE ALA TYR GLY GLN THR SER SER GLY LYS SEQRES 8 A 238 THR HIS THR MET GLU GLY LYS LEU HIS ASP PRO GLN LEU SEQRES 9 A 238 MET GLY ILE ILE PRO ARG ILE ALA HIS ASP ILE PHE ASP SEQRES 10 A 238 HIS ILE TYR SER MET ASP GLU ASN LEU GLU PHE HIS ILE SEQRES 11 A 238 LYS VAL SER TYR PHE GLU ILE TYR LEU ASP LYS ILE ARG SEQRES 12 A 238 ASP LEU LEU ASP VAL SER LYS THR ASN LEU ALA VAL HIS SEQRES 13 A 238 GLU ASP LYS ASN ARG VAL PRO TYR VAL LYS GLY CYS THR SEQRES 14 A 238 GLU ARG PHE VAL SER SER PRO GLU GLU VAL MET ASP VAL SEQRES 15 A 238 ILE ASP GLU GLY LYS ALA ASN ARG HIS VAL ALA VAL THR SEQRES 16 A 238 ASN MET ASN GLU HIS SER SER ARG SER HIS SER ILE PHE SEQRES 17 A 238 LEU ILE ASN ILE LYS GLN GLU ASN VAL GLU THR GLU LYS SEQRES 18 A 238 LYS LEU SER GLY LYS LEU TYR LEU VAL ASP LEU ALA GLY SEQRES 19 A 238 SER GLU LYS VAL SEQRES 1 B 117 ASN LYS SER LEU SER ALA LEU GLY ASN VAL ILE SER ALA SEQRES 2 B 117 LEU ALA GLU GLY THR LYS THR HIS VAL PRO TYR ARG ASP SEQRES 3 B 117 SER LYS MET THR ARG ILE LEU GLN ASP SER LEU GLY GLY SEQRES 4 B 117 ASN CYS ARG THR THR ILE VAL ILE CYS CYS SER PRO SER SEQRES 5 B 117 VAL PHE ASN GLU ALA GLU THR LYS SER THR LEU MET PHE SEQRES 6 B 117 GLY GLN ARG ALA LYS THR ILE LYS ASN THR VAL SER VAL SEQRES 7 B 117 ASN LEU GLU LEU THR ALA GLU GLU TRP LYS LYS LYS TYR SEQRES 8 B 117 GLU LYS GLU LYS GLU LYS ASN LYS ALA LEU LYS SER VAL SEQRES 9 B 117 ILE GLN HIS LEU GLU VAL GLU LEU ASN ARG TRP ARG ASN SEQRES 1 C 238 ALA ASP PRO ALA GLU CYS SER ILE LYS VAL MET CYS ARG SEQRES 2 C 238 PHE ARG PRO LEU ASN GLU ALA GLU ILE LEU ARG GLY ASP SEQRES 3 C 238 LYS PHE ILE PRO LYS PHE LYS GLY GLU GLU THR VAL VAL SEQRES 4 C 238 ILE GLY GLN GLY LYS PRO TYR VAL PHE ASP ARG VAL LEU SEQRES 5 C 238 PRO PRO ASN THR THR GLN GLU GLN VAL TYR ASN ALA CYS SEQRES 6 C 238 ALA LYS GLN ILE VAL LYS ASP VAL LEU GLU GLY TYR ASN SEQRES 7 C 238 GLY THR ILE PHE ALA TYR GLY GLN THR SER SER GLY LYS SEQRES 8 C 238 THR HIS THR MET GLU GLY LYS LEU HIS ASP PRO GLN LEU SEQRES 9 C 238 MET GLY ILE ILE PRO ARG ILE ALA HIS ASP ILE PHE ASP SEQRES 10 C 238 HIS ILE TYR SER MET ASP GLU ASN LEU GLU PHE HIS ILE SEQRES 11 C 238 LYS VAL SER TYR PHE GLU ILE TYR LEU ASP LYS ILE ARG SEQRES 12 C 238 ASP LEU LEU ASP VAL SER LYS THR ASN LEU ALA VAL HIS SEQRES 13 C 238 GLU ASP LYS ASN ARG VAL PRO TYR VAL LYS GLY CYS THR SEQRES 14 C 238 GLU ARG PHE VAL SER SER PRO GLU GLU VAL MET ASP VAL SEQRES 15 C 238 ILE ASP GLU GLY LYS ALA ASN ARG HIS VAL ALA VAL THR SEQRES 16 C 238 ASN MET ASN GLU HIS SER SER ARG SER HIS SER ILE PHE SEQRES 17 C 238 LEU ILE ASN ILE LYS GLN GLU ASN VAL GLU THR GLU LYS SEQRES 18 C 238 LYS LEU SER GLY LYS LEU TYR LEU VAL ASP LEU ALA GLY SEQRES 19 C 238 SER GLU LYS VAL SEQRES 1 D 117 ASN LYS SER LEU SER ALA LEU GLY ASN VAL ILE SER ALA SEQRES 2 D 117 LEU ALA GLU GLY THR LYS THR HIS VAL PRO TYR ARG ASP SEQRES 3 D 117 SER LYS MET THR ARG ILE LEU GLN ASP SER LEU GLY GLY SEQRES 4 D 117 ASN CYS ARG THR THR ILE VAL ILE CYS CYS SER PRO SER SEQRES 5 D 117 VAL PHE ASN GLU ALA GLU THR LYS SER THR LEU MET PHE SEQRES 6 D 117 GLY GLN ARG ALA LYS THR ILE LYS ASN THR VAL SER VAL SEQRES 7 D 117 ASN LEU GLU LEU THR ALA GLU GLU TRP LYS LYS LYS TYR SEQRES 8 D 117 GLU LYS GLU LYS GLU LYS ASN LYS ALA LEU LYS SER VAL SEQRES 9 D 117 ILE GLN HIS LEU GLU VAL GLU LEU ASN ARG TRP ARG ASN HET ADP C 400 27 HET ADP A 401 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 5 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 HOH *60(H2 O) HELIX 1 1 GLU A 20 LEU A 24 1 5 HELIX 2 2 GLN A 59 CYS A 66 1 8 HELIX 3 3 LYS A 68 VAL A 74 1 7 HELIX 4 4 LYS A 92 MET A 96 1 5 HELIX 5 5 ILE A 108 SER A 122 1 15 HELIX 6 6 PRO A 177 ASN A 190 1 14 HELIX 7 7 MET A 198 ARG A 204 1 7 HELIX 8 8 SER B 258 GLU B 271 1 14 HELIX 9 9 TYR B 279 ASP B 281 5 3 HELIX 10 10 LYS B 283 GLY B 293 1 11 HELIX 11 11 VAL B 308 THR B 326 5 19 HELIX 12 12 ALA B 339 TRP B 370 1 32 HELIX 13 13 GLU C 20 ARG C 25 1 6 HELIX 14 14 GLN C 59 CYS C 66 1 8 HELIX 15 15 LYS C 68 GLU C 76 1 9 HELIX 16 16 LYS C 92 MET C 96 1 5 HELIX 17 17 ILE C 108 SER C 122 1 15 HELIX 18 18 PRO C 177 HIS C 192 1 16 HELIX 19 19 MET C 198 ARG C 204 1 7 HELIX 20 20 LYS D 257 GLU D 271 1 15 HELIX 21 21 TYR D 279 ASP D 281 5 3 HELIX 22 22 LYS D 283 ILE D 287 1 5 HELIX 23 23 GLN D 289 GLY D 293 1 5 HELIX 24 24 VAL D 308 LYS D 325 5 18 HELIX 25 25 ALA D 339 GLU D 364 1 26 HELIX 26 26 GLU D 366 ASN D 368 5 3 SHEET 1 A 2 MET A 12 ARG A 14 0 SHEET 2 A 2 ARG A 51 LEU A 53 1 N ARG A 51 O CYS A 13 SHEET 1 B 2 PRO A 31 LYS A 34 0 SHEET 2 B 2 THR A 38 ILE A 41 -1 N VAL A 40 O LYS A 32 SHEET 1 C 5 THR A 81 ALA A 84 0 SHEET 2 C 5 LYS A 223 ASP A 232 1 N TYR A 229 O ILE A 82 SHEET 3 C 5 SER A 205 ASN A 217 -1 N GLN A 215 O LEU A 224 SHEET 4 C 5 LEU A 127 TYR A 139 -1 N ILE A 138 O HIS A 206 SHEET 5 C 5 ARG A 172 VAL A 174 -1 N VAL A 174 O ILE A 131 SHEET 1 D 2 PHE A 136 TYR A 139 0 SHEET 2 D 2 LYS A 142 ASP A 145 -1 N ARG A 144 O GLU A 137 SHEET 1 E 2 VAL A 156 GLU A 158 0 SHEET 2 E 2 PRO A 164 VAL A 166 -1 N TYR A 165 O HIS A 157 SHEET 1 F 2 MET C 12 ARG C 14 0 SHEET 2 F 2 ARG C 51 LEU C 53 1 N ARG C 51 O CYS C 13 SHEET 1 G 2 PRO C 31 LYS C 34 0 SHEET 2 G 2 THR C 38 ILE C 41 -1 N VAL C 40 O LYS C 32 SHEET 1 H 5 GLY C 80 ALA C 84 0 SHEET 2 H 5 LYS C 223 ASP C 232 1 N TYR C 229 O GLY C 80 SHEET 3 H 5 HIS C 206 GLU C 216 -1 N GLN C 215 O LEU C 224 SHEET 4 H 5 ILE C 131 ILE C 138 -1 N ILE C 138 O HIS C 206 SHEET 5 H 5 ARG C 172 VAL C 174 -1 N VAL C 174 O ILE C 131 SHEET 1 I 2 PHE C 136 TYR C 139 0 SHEET 2 I 2 LYS C 142 ASP C 145 -1 N ARG C 144 O GLU C 137 SHEET 1 J 2 VAL C 156 GLU C 158 0 SHEET 2 J 2 PRO C 164 VAL C 166 -1 N TYR C 165 O HIS C 157 LINK O1A ADP A 401 N GLY A 91 1555 1555 2.00 LINK O3' ADP A 401 CA GLY A 91 1555 1555 1.57 LINK OD2 ASP A 124 N6 ADP A 401 4556 1555 1.81 SITE 1 AC1 10 ALA A 21 LEU A 24 PRO C 17 THR C 88 SITE 2 AC1 10 SER C 89 SER C 90 GLY C 91 LYS C 92 SITE 3 AC1 10 THR C 93 HIS C 94 SITE 1 AC2 11 ARG A 16 PRO A 17 GLN A 87 SER A 89 SITE 2 AC2 11 SER A 90 GLY A 91 LYS A 92 THR A 93 SITE 3 AC2 11 HIS A 94 ASP A 124 GLU A 125 CRYST1 72.150 91.850 141.680 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013860 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010887 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007058 0.00000