HEADER HYDROLASE, METAL BINDING PROTEIN 03-NOV-09 3KJI TITLE ZN AND ADP BOUND STATE OF COOC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CO DEHYDROGENASE/ACETYL-COA SYNTHASE COMPLEX, COMPND 3 ACCESSORY PROTEIN COOC; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CARBOXYDOTHERMUS HYDROGENOFORMANS; SOURCE 3 ORGANISM_TAXID: 246194; SOURCE 4 STRAIN: Z-2901; SOURCE 5 GENE: CHY_1220, COOC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS ZN/ADP-BOUND DIMER, NICKEL BINDING PROTEIN, ATPASE, KEYWDS 2 HYDROLASE, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.-H.JEOUNG,H.DOBBEK REVDAT 2 09-MAR-10 3KJI 1 JRNL REVDAT 1 19-JAN-10 3KJI 0 JRNL AUTH J.H.JEOUNG,T.GIESE,M.GRUNWALD,H.DOBBEK JRNL TITL CRYSTAL STRUCTURE OF THE ATP-DEPENDENT MATURATION JRNL TITL 2 FACTOR OF NI,FE-CONTAINING CARBON MONOXIDE JRNL TITL 3 DEHYDROGENASES JRNL REF J.MOL.BIOL. V. 396 1165 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20064527 JRNL DOI 10.1016/J.JMB.2009.12.062 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 34672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1734 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3918 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 451 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.07700 REMARK 3 B22 (A**2) : 4.07400 REMARK 3 B33 (A**2) : -11.15100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 6.41000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 44.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : PRODRG-ADP.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KJI COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB056069. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34673 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM CITRATE TRIBASIC, 10% REMARK 280 PEG3350, 5% GLYCEROL, 10 MM ALF4, 10 MM MGCL2, 1 MM ADP, PH REMARK 280 8.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.17650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.88000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.17650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.88000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 60.00874 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.39771 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN B 255 LIES ON A SPECIAL POSITION. REMARK 375 ZN ZN A 255 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N TYR B 113 O HOH B 277 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 144 CB GLU A 144 CG -0.206 REMARK 500 GLU A 144 CG GLU A 144 CD -0.115 REMARK 500 GLU A 144 CD GLU A 144 OE1 -0.136 REMARK 500 GLU A 144 CD GLU A 144 OE2 -0.145 REMARK 500 GLU A 144 C GLU A 144 O -0.173 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 107 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 GLY A 108 C - N - CA ANGL. DEV. = -15.8 DEGREES REMARK 500 ILE B 105 CG1 - CB - CG2 ANGL. DEV. = 13.5 DEGREES REMARK 500 LYS B 107 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 94 -154.22 -139.82 REMARK 500 GLU A 133 153.44 -49.41 REMARK 500 ILE A 143 40.90 39.19 REMARK 500 ALA A 151 -16.21 -49.68 REMARK 500 THR B 147 -146.85 -123.01 REMARK 500 LYS B 184 -70.43 -48.39 REMARK 500 ALA B 238 -18.74 -48.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LYS A 107 46.9 L L OUTSIDE RANGE REMARK 500 LYS B 107 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 279 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH A 281 DISTANCE = 8.25 ANGSTROMS REMARK 525 HOH A 282 DISTANCE = 7.92 ANGSTROMS REMARK 525 HOH A 301 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 302 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B 324 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH B 334 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH A 339 DISTANCE = 5.16 ANGSTROMS REMARK 525 HOH A 341 DISTANCE = 7.41 ANGSTROMS REMARK 525 HOH A 379 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH A 380 DISTANCE = 9.69 ANGSTROMS REMARK 525 HOH A 381 DISTANCE = 13.05 ANGSTROMS REMARK 525 HOH A 387 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH A 388 DISTANCE = 5.76 ANGSTROMS REMARK 525 HOH A 390 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH A 396 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH A 397 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 398 DISTANCE = 8.30 ANGSTROMS REMARK 525 HOH A 399 DISTANCE = 9.23 ANGSTROMS REMARK 525 HOH A 400 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 402 DISTANCE = 8.93 ANGSTROMS REMARK 525 HOH A 412 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 413 DISTANCE = 5.18 ANGSTROMS REMARK 525 HOH A 418 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B 425 DISTANCE = 5.27 ANGSTROMS REMARK 525 HOH B 440 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH B 521 DISTANCE = 5.02 ANGSTROMS REMARK 525 HOH A 520 DISTANCE = 5.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 255 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 112 SG REMARK 620 2 CYS A 114 SG 105.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 255 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 112 SG REMARK 620 2 CYS B 114 SG 118.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 256 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 255 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 256 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KJE RELATED DB: PDB REMARK 900 RELATED ID: 3KJG RELATED DB: PDB REMARK 900 RELATED ID: 3KJH RELATED DB: PDB DBREF 3KJI A 1 254 UNP Q3ACS5 Q3ACS5_CARHZ 1 254 DBREF 3KJI B 1 254 UNP Q3ACS5 Q3ACS5_CARHZ 1 254 SEQRES 1 A 254 MET LYS LEU ALA VAL ALA GLY LYS GLY GLY VAL GLY LYS SEQRES 2 A 254 THR THR VAL ALA ALA GLY LEU ILE LYS ILE MET ALA SER SEQRES 3 A 254 ASP TYR ASP LYS ILE TYR ALA VAL ASP GLY ASP PRO ASP SEQRES 4 A 254 SER CYS LEU GLY GLN THR LEU GLY LEU SER ILE GLU GLU SEQRES 5 A 254 ALA TYR ALA ILE THR PRO LEU ILE GLU MET LYS ASP GLU SEQRES 6 A 254 ILE ARG GLU LYS THR GLY ASP GLY GLY LEU LEU ILE LEU SEQRES 7 A 254 ASN PRO LYS VAL ASP GLY ASP LEU ASP LYS TYR GLY ARG SEQRES 8 A 254 TYR ILE ASP ASP LYS ILE PHE LEU ILE ARG MET GLY GLU SEQRES 9 A 254 ILE LYS LYS GLY GLY SER GLN CYS TYR CYS ARG GLU ASN SEQRES 10 A 254 SER PHE LEU GLY SER VAL VAL SER ALA LEU PHE LEU ASP SEQRES 11 A 254 LYS LYS GLU ALA VAL VAL MET ASP MET GLY ALA GLY ILE SEQRES 12 A 254 GLU HIS LEU THR ARG GLY THR ALA LYS ALA VAL ASP MET SEQRES 13 A 254 MET ILE ALA VAL ILE GLU PRO ASN LEU ASN SER ILE LYS SEQRES 14 A 254 THR GLY LEU ASN ILE GLU LYS LEU ALA GLY ASP LEU GLY SEQRES 15 A 254 ILE LYS LYS VAL ARG TYR VAL ILE ASN LYS VAL ARG ASN SEQRES 16 A 254 ILE LYS GLU GLU LYS LEU ILE LYS LYS HIS LEU PRO GLU SEQRES 17 A 254 ASP LYS ILE LEU GLY ILE ILE PRO TYR ASN GLU LEU PHE SEQRES 18 A 254 ILE GLU LEU SER LEU LYS GLY GLU GLU ILE TRP GLN SER SEQRES 19 A 254 THR ASN PRO ALA PHE VAL ASN LEU HIS ASP ILE TYR GLN SEQRES 20 A 254 LYS LEU ARG LEU GLU VAL GLY SEQRES 1 B 254 MET LYS LEU ALA VAL ALA GLY LYS GLY GLY VAL GLY LYS SEQRES 2 B 254 THR THR VAL ALA ALA GLY LEU ILE LYS ILE MET ALA SER SEQRES 3 B 254 ASP TYR ASP LYS ILE TYR ALA VAL ASP GLY ASP PRO ASP SEQRES 4 B 254 SER CYS LEU GLY GLN THR LEU GLY LEU SER ILE GLU GLU SEQRES 5 B 254 ALA TYR ALA ILE THR PRO LEU ILE GLU MET LYS ASP GLU SEQRES 6 B 254 ILE ARG GLU LYS THR GLY ASP GLY GLY LEU LEU ILE LEU SEQRES 7 B 254 ASN PRO LYS VAL ASP GLY ASP LEU ASP LYS TYR GLY ARG SEQRES 8 B 254 TYR ILE ASP ASP LYS ILE PHE LEU ILE ARG MET GLY GLU SEQRES 9 B 254 ILE LYS LYS GLY GLY SER GLN CYS TYR CYS ARG GLU ASN SEQRES 10 B 254 SER PHE LEU GLY SER VAL VAL SER ALA LEU PHE LEU ASP SEQRES 11 B 254 LYS LYS GLU ALA VAL VAL MET ASP MET GLY ALA GLY ILE SEQRES 12 B 254 GLU HIS LEU THR ARG GLY THR ALA LYS ALA VAL ASP MET SEQRES 13 B 254 MET ILE ALA VAL ILE GLU PRO ASN LEU ASN SER ILE LYS SEQRES 14 B 254 THR GLY LEU ASN ILE GLU LYS LEU ALA GLY ASP LEU GLY SEQRES 15 B 254 ILE LYS LYS VAL ARG TYR VAL ILE ASN LYS VAL ARG ASN SEQRES 16 B 254 ILE LYS GLU GLU LYS LEU ILE LYS LYS HIS LEU PRO GLU SEQRES 17 B 254 ASP LYS ILE LEU GLY ILE ILE PRO TYR ASN GLU LEU PHE SEQRES 18 B 254 ILE GLU LEU SER LEU LYS GLY GLU GLU ILE TRP GLN SER SEQRES 19 B 254 THR ASN PRO ALA PHE VAL ASN LEU HIS ASP ILE TYR GLN SEQRES 20 B 254 LYS LEU ARG LEU GLU VAL GLY HET ZN A 255 1 HET ADP A 256 27 HET ZN B 255 1 HET ADP B 256 27 HETNAM ZN ZINC ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ADP 2(C10 H15 N5 O10 P2) FORMUL 7 HOH *451(H2 O) HELIX 1 1 GLY A 12 TYR A 28 1 17 HELIX 2 2 CYS A 41 LEU A 46 1 6 HELIX 3 3 SER A 49 ALA A 55 1 7 HELIX 4 4 PRO A 58 GLU A 61 5 4 HELIX 5 5 MET A 62 GLY A 71 1 10 HELIX 6 6 VAL A 82 TYR A 89 5 8 HELIX 7 7 TYR A 113 ASP A 130 1 18 HELIX 8 8 THR A 147 LYS A 152 1 6 HELIX 9 9 ASN A 164 GLY A 182 1 19 HELIX 10 10 ASN A 195 LEU A 206 1 12 HELIX 11 11 PRO A 207 ASP A 209 5 3 HELIX 12 12 GLU A 219 LEU A 226 1 8 HELIX 13 13 ALA A 238 GLY A 254 1 17 HELIX 14 14 GLY B 12 ALA B 25 1 14 HELIX 15 15 CYS B 41 LEU B 46 1 6 HELIX 16 16 SER B 49 ILE B 56 1 8 HELIX 17 17 PRO B 58 GLU B 61 5 4 HELIX 18 18 MET B 62 GLY B 71 1 10 HELIX 19 19 ASP B 85 TYR B 89 5 5 HELIX 20 20 ARG B 115 ASP B 130 1 16 HELIX 21 21 ASN B 164 LEU B 181 1 18 HELIX 22 22 ASN B 195 LEU B 206 1 12 HELIX 23 23 PRO B 207 ASP B 209 5 3 HELIX 24 24 ASN B 218 LYS B 227 1 10 HELIX 25 25 PRO B 237 GLY B 254 1 18 SHEET 1 A 8 ARG A 91 TYR A 92 0 SHEET 2 A 8 ILE A 97 ARG A 101 -1 O LEU A 99 N ARG A 91 SHEET 3 A 8 ILE A 31 GLY A 36 1 N ILE A 31 O PHE A 98 SHEET 4 A 8 ALA A 134 MET A 139 1 O VAL A 136 N VAL A 34 SHEET 5 A 8 LYS A 2 ALA A 6 1 N LEU A 3 O VAL A 135 SHEET 6 A 8 MET A 156 ILE A 161 1 O ILE A 158 N ALA A 4 SHEET 7 A 8 VAL A 186 VAL A 193 1 O ASN A 191 N ILE A 161 SHEET 8 A 8 ILE A 211 PRO A 216 1 O LEU A 212 N TYR A 188 SHEET 1 B 8 ARG B 91 TYR B 92 0 SHEET 2 B 8 ILE B 97 ARG B 101 -1 O LEU B 99 N ARG B 91 SHEET 3 B 8 ILE B 31 GLY B 36 1 N ALA B 33 O PHE B 98 SHEET 4 B 8 ALA B 134 MET B 139 1 O VAL B 136 N VAL B 34 SHEET 5 B 8 LYS B 2 ALA B 6 1 N LEU B 3 O VAL B 135 SHEET 6 B 8 MET B 156 ILE B 161 1 O ILE B 158 N ALA B 4 SHEET 7 B 8 VAL B 186 VAL B 193 1 O ARG B 187 N ALA B 159 SHEET 8 B 8 ILE B 211 PRO B 216 1 O ILE B 215 N ILE B 190 SSBOND 1 CYS B 112 CYS B 112 1555 2555 2.86 LINK SG CYS A 112 ZN ZN A 255 1555 1555 2.27 LINK SG CYS A 114 ZN ZN A 255 1555 1555 2.23 LINK SG CYS B 112 ZN ZN B 255 1555 1555 2.02 LINK SG CYS B 114 ZN ZN B 255 1555 1555 2.13 SITE 1 AC1 2 CYS A 112 CYS A 114 SITE 1 AC2 18 LYS A 8 GLY A 9 GLY A 10 VAL A 11 SITE 2 AC2 18 GLY A 12 LYS A 13 THR A 14 THR A 15 SITE 3 AC2 18 SER A 40 ASN A 191 LYS A 192 PRO A 216 SITE 4 AC2 18 TYR A 217 ASN A 218 PHE A 221 SER A 225 SITE 5 AC2 18 HOH A 361 HOH A 478 SITE 1 AC3 2 CYS B 112 CYS B 114 SITE 1 AC4 19 ARG A 148 LYS A 184 LYS B 8 GLY B 9 SITE 2 AC4 19 GLY B 10 VAL B 11 GLY B 12 LYS B 13 SITE 3 AC4 19 THR B 14 THR B 15 SER B 40 ASN B 191 SITE 4 AC4 19 LYS B 192 PRO B 216 TYR B 217 ASN B 218 SITE 5 AC4 19 PHE B 221 HOH B 301 HOH B 393 CRYST1 114.353 81.760 86.578 90.00 128.88 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008745 0.000000 0.007051 0.00000 SCALE2 0.000000 0.012231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014837 0.00000