HEADER TRANSCRIPTION REGULATOR 05-NOV-09 3KKC TITLE THE CRYSTAL STRUCTURE OF TETR TRANSCRIPTIONAL REGULATOR FROM TITLE 2 STREPTOCOCCUS AGALACTIAE 2603V COMPND MOL_ID: 1; COMPND 2 MOLECULE: TETR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE 2603V/R; SOURCE 3 ORGANISM_TAXID: 208435; SOURCE 4 STRAIN: 2603V; SOURCE 5 GENE: SAG0431, STREPTOCOCCUS AGALACTIAE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PPK1037; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS APC20805, TETR, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION KEYWDS 4 REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,C.HATZOS,T.MORGAN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 1 17-NOV-09 3KKC 0 JRNL AUTH K.TAN,C.HATZOS,T.MORGAN,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF TETR TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM STREPTOCOCCUS AGALACTIAE 2603V JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 53071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 2665 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.1570 - 5.3819 0.92 4843 272 0.1898 0.2379 REMARK 3 2 5.3819 - 4.2726 0.98 5190 278 0.1459 0.2329 REMARK 3 3 4.2726 - 3.7328 1.00 5245 284 0.1701 0.2400 REMARK 3 4 3.7328 - 3.3916 1.00 5221 297 0.2055 0.3179 REMARK 3 5 3.3916 - 3.1485 1.00 5258 288 0.2468 0.3222 REMARK 3 6 3.1485 - 2.9629 1.00 5275 279 0.2756 0.3590 REMARK 3 7 2.9629 - 2.8146 0.99 5300 273 0.2822 0.3414 REMARK 3 8 2.8146 - 2.6921 0.98 5164 246 0.3103 0.3937 REMARK 3 9 2.6921 - 2.5884 0.92 4825 221 0.3381 0.4152 REMARK 3 10 2.5884 - 2.4991 0.77 4085 227 0.3467 0.4314 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.30 REMARK 3 B_SOL : 53.51 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6208 REMARK 3 ANGLE : 1.211 8360 REMARK 3 CHIRALITY : 0.080 918 REMARK 3 PLANARITY : 0.004 1054 REMARK 3 DIHEDRAL : 22.481 2260 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN D RESID 52:174 REMARK 3 ORIGIN FOR THE GROUP (A): 12.6155 56.6838 60.7904 REMARK 3 T TENSOR REMARK 3 T11: 0.9088 T22: 0.5779 REMARK 3 T33: 0.9586 T12: -0.0725 REMARK 3 T13: -0.4874 T23: 0.1666 REMARK 3 L TENSOR REMARK 3 L11: 1.2321 L22: 2.8017 REMARK 3 L33: 2.3942 L12: -0.6947 REMARK 3 L13: -1.3282 L23: 2.0379 REMARK 3 S TENSOR REMARK 3 S11: -0.2379 S12: -0.2860 S13: -0.7431 REMARK 3 S21: 1.4156 S22: 0.3154 S23: -0.7360 REMARK 3 S31: 1.1144 S32: 0.0814 S33: -0.2505 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KKC COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB056099. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97940, 0.97951 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27427 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 48.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELXD/MLPHARE/DM/RESOLVE/HKL3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M TRI-SODIUM CITRATE DIHYDRATE, REMARK 280 20% W/V PEG3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.34050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. THE CHAISN A AND B, C AND D ARE REMARK 300 PREDICTED TO FORM DIMERS, RESPECTIVELY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18330 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER C -2 REMARK 465 SER D -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 60 -75.13 -45.20 REMARK 500 LYS A 70 19.99 -63.42 REMARK 500 GLN A 92 107.17 -50.86 REMARK 500 VAL A 130 40.31 -144.60 REMARK 500 GLU B 24 -83.68 -124.13 REMARK 500 SER B 52 -179.37 179.50 REMARK 500 PHE B 69 -87.85 -98.97 REMARK 500 LYS B 70 13.21 -52.40 REMARK 500 ASP B 93 50.05 -117.75 REMARK 500 ASP B 102 7.47 81.99 REMARK 500 LYS B 129 99.87 -164.85 REMARK 500 VAL B 130 31.76 -71.03 REMARK 500 GLU B 173 93.26 -52.23 REMARK 500 GLU C 24 -30.73 -130.70 REMARK 500 VAL C 32 -30.61 -39.69 REMARK 500 ASN C 40 46.46 26.70 REMARK 500 GLU C 51 -74.59 -54.22 REMARK 500 LYS C 129 94.39 -41.52 REMARK 500 ASP C 131 59.44 -68.14 REMARK 500 GLU D 24 -76.14 -78.36 REMARK 500 ASN D 25 -153.11 -89.44 REMARK 500 LYS D 70 96.47 -69.17 REMARK 500 ARG D 73 95.85 -52.46 REMARK 500 ASP D 102 -15.80 71.16 REMARK 500 LYS D 158 -160.36 -71.67 REMARK 500 GLU D 173 145.62 -39.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 67 NE2 REMARK 620 2 HIS A 83 NE2 94.1 REMARK 620 3 HIS A 87 NE2 99.1 94.0 REMARK 620 4 IMD A 212 N1 85.8 176.9 83.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 67 NE2 REMARK 620 2 HIS B 83 NE2 94.9 REMARK 620 3 HIS B 87 NE2 78.3 83.2 REMARK 620 4 IMD B 211 N3 94.2 169.4 104.2 REMARK 620 5 IMD B 213 N3 83.9 99.2 162.2 76.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 67 NE2 REMARK 620 2 HIS C 83 NE2 88.6 REMARK 620 3 HIS C 87 NE2 73.7 78.3 REMARK 620 4 IMD C 211 N3 103.8 75.7 153.9 REMARK 620 5 IMD C 213 N3 90.4 160.7 119.8 85.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 67 NE2 REMARK 620 2 HIS D 83 NE2 75.4 REMARK 620 3 HIS D 87 NE2 82.8 92.0 REMARK 620 4 IMD D 212 N1 110.0 152.1 115.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 201 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 211 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 212 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD A 213 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 201 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 211 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 212 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD B 213 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 201 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 211 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 212 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD C 213 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 201 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD D 211 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD D 212 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IMD D 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC20805 RELATED DB: TARGETDB DBREF 3KKC A 1 174 UNP Q8E1C6 Q8E1C6_STRA5 1 174 DBREF 3KKC B 1 174 UNP Q8E1C6 Q8E1C6_STRA5 1 174 DBREF 3KKC C 1 174 UNP Q8E1C6 Q8E1C6_STRA5 1 174 DBREF 3KKC D 1 174 UNP Q8E1C6 Q8E1C6_STRA5 1 174 SEQADV 3KKC SER A -2 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC ASN A -1 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC ALA A 0 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC SER B -2 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC ASN B -1 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC ALA B 0 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC SER C -2 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC ASN C -1 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC ALA C 0 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC SER D -2 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC ASN D -1 UNP Q8E1C6 EXPRESSION TAG SEQADV 3KKC ALA D 0 UNP Q8E1C6 EXPRESSION TAG SEQRES 1 A 177 SER ASN ALA MSE VAL LYS ASP ARG GLN ILE GLN LYS THR SEQRES 2 A 177 LYS VAL ALA ILE TYR ASN ALA PHE ILE SER LEU LEU GLN SEQRES 3 A 177 GLU ASN ASP TYR SER LYS ILE THR VAL GLN ASP VAL ILE SEQRES 4 A 177 GLY LEU ALA ASN VAL GLY ARG SER THR PHE TYR SER HIS SEQRES 5 A 177 TYR GLU SER LYS GLU VAL LEU LEU LYS GLU LEU CYS GLU SEQRES 6 A 177 ASP LEU PHE HIS HIS LEU PHE LYS GLN GLY ARG ASP VAL SEQRES 7 A 177 THR PHE GLU GLU TYR LEU VAL HIS ILE LEU LYS HIS PHE SEQRES 8 A 177 GLU GLN ASN GLN ASP SER ILE ALA THR LEU LEU LEU SER SEQRES 9 A 177 ASP ASP PRO TYR PHE LEU LEU ARG PHE ARG SER GLU LEU SEQRES 10 A 177 GLU HIS ASP VAL TYR PRO ARG LEU ARG GLU GLU TYR ILE SEQRES 11 A 177 THR LYS VAL ASP ILE PRO GLU ASP PHE LEU LYS GLN PHE SEQRES 12 A 177 LEU LEU SER SER PHE ILE GLU THR LEU LYS TRP TRP LEU SEQRES 13 A 177 HIS GLN ARG GLN LYS MSE THR VAL GLU ASP LEU LEU LYS SEQRES 14 A 177 TYR TYR LEU THR MSE VAL GLU ARG SEQRES 1 B 177 SER ASN ALA MSE VAL LYS ASP ARG GLN ILE GLN LYS THR SEQRES 2 B 177 LYS VAL ALA ILE TYR ASN ALA PHE ILE SER LEU LEU GLN SEQRES 3 B 177 GLU ASN ASP TYR SER LYS ILE THR VAL GLN ASP VAL ILE SEQRES 4 B 177 GLY LEU ALA ASN VAL GLY ARG SER THR PHE TYR SER HIS SEQRES 5 B 177 TYR GLU SER LYS GLU VAL LEU LEU LYS GLU LEU CYS GLU SEQRES 6 B 177 ASP LEU PHE HIS HIS LEU PHE LYS GLN GLY ARG ASP VAL SEQRES 7 B 177 THR PHE GLU GLU TYR LEU VAL HIS ILE LEU LYS HIS PHE SEQRES 8 B 177 GLU GLN ASN GLN ASP SER ILE ALA THR LEU LEU LEU SER SEQRES 9 B 177 ASP ASP PRO TYR PHE LEU LEU ARG PHE ARG SER GLU LEU SEQRES 10 B 177 GLU HIS ASP VAL TYR PRO ARG LEU ARG GLU GLU TYR ILE SEQRES 11 B 177 THR LYS VAL ASP ILE PRO GLU ASP PHE LEU LYS GLN PHE SEQRES 12 B 177 LEU LEU SER SER PHE ILE GLU THR LEU LYS TRP TRP LEU SEQRES 13 B 177 HIS GLN ARG GLN LYS MSE THR VAL GLU ASP LEU LEU LYS SEQRES 14 B 177 TYR TYR LEU THR MSE VAL GLU ARG SEQRES 1 C 177 SER ASN ALA MSE VAL LYS ASP ARG GLN ILE GLN LYS THR SEQRES 2 C 177 LYS VAL ALA ILE TYR ASN ALA PHE ILE SER LEU LEU GLN SEQRES 3 C 177 GLU ASN ASP TYR SER LYS ILE THR VAL GLN ASP VAL ILE SEQRES 4 C 177 GLY LEU ALA ASN VAL GLY ARG SER THR PHE TYR SER HIS SEQRES 5 C 177 TYR GLU SER LYS GLU VAL LEU LEU LYS GLU LEU CYS GLU SEQRES 6 C 177 ASP LEU PHE HIS HIS LEU PHE LYS GLN GLY ARG ASP VAL SEQRES 7 C 177 THR PHE GLU GLU TYR LEU VAL HIS ILE LEU LYS HIS PHE SEQRES 8 C 177 GLU GLN ASN GLN ASP SER ILE ALA THR LEU LEU LEU SER SEQRES 9 C 177 ASP ASP PRO TYR PHE LEU LEU ARG PHE ARG SER GLU LEU SEQRES 10 C 177 GLU HIS ASP VAL TYR PRO ARG LEU ARG GLU GLU TYR ILE SEQRES 11 C 177 THR LYS VAL ASP ILE PRO GLU ASP PHE LEU LYS GLN PHE SEQRES 12 C 177 LEU LEU SER SER PHE ILE GLU THR LEU LYS TRP TRP LEU SEQRES 13 C 177 HIS GLN ARG GLN LYS MSE THR VAL GLU ASP LEU LEU LYS SEQRES 14 C 177 TYR TYR LEU THR MSE VAL GLU ARG SEQRES 1 D 177 SER ASN ALA MSE VAL LYS ASP ARG GLN ILE GLN LYS THR SEQRES 2 D 177 LYS VAL ALA ILE TYR ASN ALA PHE ILE SER LEU LEU GLN SEQRES 3 D 177 GLU ASN ASP TYR SER LYS ILE THR VAL GLN ASP VAL ILE SEQRES 4 D 177 GLY LEU ALA ASN VAL GLY ARG SER THR PHE TYR SER HIS SEQRES 5 D 177 TYR GLU SER LYS GLU VAL LEU LEU LYS GLU LEU CYS GLU SEQRES 6 D 177 ASP LEU PHE HIS HIS LEU PHE LYS GLN GLY ARG ASP VAL SEQRES 7 D 177 THR PHE GLU GLU TYR LEU VAL HIS ILE LEU LYS HIS PHE SEQRES 8 D 177 GLU GLN ASN GLN ASP SER ILE ALA THR LEU LEU LEU SER SEQRES 9 D 177 ASP ASP PRO TYR PHE LEU LEU ARG PHE ARG SER GLU LEU SEQRES 10 D 177 GLU HIS ASP VAL TYR PRO ARG LEU ARG GLU GLU TYR ILE SEQRES 11 D 177 THR LYS VAL ASP ILE PRO GLU ASP PHE LEU LYS GLN PHE SEQRES 12 D 177 LEU LEU SER SER PHE ILE GLU THR LEU LYS TRP TRP LEU SEQRES 13 D 177 HIS GLN ARG GLN LYS MSE THR VAL GLU ASP LEU LEU LYS SEQRES 14 D 177 TYR TYR LEU THR MSE VAL GLU ARG MODRES 3KKC MSE A 1 MET SELENOMETHIONINE MODRES 3KKC MSE A 159 MET SELENOMETHIONINE MODRES 3KKC MSE A 171 MET SELENOMETHIONINE MODRES 3KKC MSE B 1 MET SELENOMETHIONINE MODRES 3KKC MSE B 159 MET SELENOMETHIONINE MODRES 3KKC MSE B 171 MET SELENOMETHIONINE MODRES 3KKC MSE C 1 MET SELENOMETHIONINE MODRES 3KKC MSE C 159 MET SELENOMETHIONINE MODRES 3KKC MSE C 171 MET SELENOMETHIONINE MODRES 3KKC MSE D 1 MET SELENOMETHIONINE MODRES 3KKC MSE D 159 MET SELENOMETHIONINE MODRES 3KKC MSE D 171 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 159 8 HET MSE A 171 8 HET MSE B 1 8 HET MSE B 159 8 HET MSE B 171 8 HET MSE C 1 8 HET MSE C 159 8 HET MSE C 171 8 HET MSE D 1 8 HET MSE D 159 8 HET MSE D 171 8 HET NI A 201 1 HET IMD A 211 5 HET IMD A 212 5 HET IMD A 213 5 HET NI B 201 1 HET IMD B 211 5 HET IMD B 212 5 HET IMD B 213 5 HET NI C 201 1 HET IMD C 211 5 HET IMD C 212 5 HET IMD C 213 5 HET NI D 201 1 HET IMD D 211 5 HET IMD D 212 5 HET IMD D 213 5 HETNAM MSE SELENOMETHIONINE HETNAM NI NICKEL (II) ION HETNAM IMD IMIDAZOLE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 NI 4(NI 2+) FORMUL 6 IMD 12(C3 H5 N2 1+) FORMUL 21 HOH *3(H2 O) HELIX 1 1 ALA A 0 LEU A 22 1 23 HELIX 2 2 THR A 31 ASN A 40 1 10 HELIX 3 3 GLY A 42 TYR A 47 1 6 HELIX 4 4 LYS A 53 PHE A 69 1 17 HELIX 5 5 THR A 76 ASN A 91 1 16 HELIX 6 6 SER A 94 SER A 101 1 8 HELIX 7 7 ASP A 103 VAL A 118 1 16 HELIX 8 8 VAL A 118 ILE A 127 1 10 HELIX 9 9 PRO A 133 GLN A 155 1 23 HELIX 10 10 THR A 160 GLU A 173 1 14 HELIX 11 11 SER B -2 GLN B 23 1 26 HELIX 12 12 ASP B 26 ILE B 30 5 5 HELIX 13 13 THR B 31 ASN B 40 1 10 HELIX 14 14 GLY B 42 TYR B 50 1 9 HELIX 15 15 SER B 52 PHE B 69 1 18 HELIX 16 16 THR B 76 ASN B 91 1 16 HELIX 17 17 SER B 94 ASP B 102 1 9 HELIX 18 18 ASP B 103 VAL B 118 1 16 HELIX 19 19 VAL B 118 ILE B 127 1 10 HELIX 20 20 PRO B 133 HIS B 154 1 22 HELIX 21 21 THR B 160 GLU B 173 1 14 HELIX 22 22 ASN C -1 LEU C 22 1 24 HELIX 23 23 ASP C 26 ILE C 30 5 5 HELIX 24 24 THR C 31 ALA C 39 1 9 HELIX 25 25 GLY C 42 TYR C 50 1 9 HELIX 26 26 SER C 52 LYS C 70 1 19 HELIX 27 27 THR C 76 GLN C 90 1 15 HELIX 28 28 SER C 94 SER C 101 1 8 HELIX 29 29 ASP C 103 VAL C 118 1 16 HELIX 30 30 VAL C 118 ILE C 127 1 10 HELIX 31 31 PRO C 133 GLN C 155 1 23 HELIX 32 32 THR C 160 GLU C 173 1 14 HELIX 33 33 ASN D -1 ASN D 16 1 18 HELIX 34 34 ASN D 16 ASN D 25 1 10 HELIX 35 35 ASP D 26 ILE D 30 5 5 HELIX 36 36 THR D 31 ASN D 40 1 10 HELIX 37 37 GLY D 42 TYR D 47 1 6 HELIX 38 38 LYS D 53 LYS D 70 1 18 HELIX 39 39 THR D 76 GLN D 90 1 15 HELIX 40 40 ASN D 91 ASP D 93 5 3 HELIX 41 41 SER D 94 SER D 101 1 8 HELIX 42 42 ASP D 103 VAL D 118 1 16 HELIX 43 43 VAL D 118 ILE D 127 1 10 HELIX 44 44 PRO D 133 HIS D 154 1 22 HELIX 45 45 THR D 160 THR D 170 1 11 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N VAL A 2 1555 1555 1.34 LINK C LYS A 158 N MSE A 159 1555 1555 1.33 LINK C MSE A 159 N THR A 160 1555 1555 1.33 LINK C THR A 170 N MSE A 171 1555 1555 1.33 LINK C MSE A 171 N VAL A 172 1555 1555 1.33 LINK C ALA B 0 N MSE B 1 1555 1555 1.33 LINK C MSE B 1 N VAL B 2 1555 1555 1.33 LINK C LYS B 158 N MSE B 159 1555 1555 1.33 LINK C MSE B 159 N THR B 160 1555 1555 1.33 LINK C THR B 170 N MSE B 171 1555 1555 1.34 LINK C MSE B 171 N VAL B 172 1555 1555 1.33 LINK C ALA C 0 N MSE C 1 1555 1555 1.33 LINK C MSE C 1 N VAL C 2 1555 1555 1.33 LINK C LYS C 158 N MSE C 159 1555 1555 1.33 LINK C MSE C 159 N THR C 160 1555 1555 1.33 LINK C THR C 170 N MSE C 171 1555 1555 1.34 LINK C MSE C 171 N VAL C 172 1555 1555 1.33 LINK C ALA D 0 N MSE D 1 1555 1555 1.33 LINK C MSE D 1 N VAL D 2 1555 1555 1.33 LINK C LYS D 158 N MSE D 159 1555 1555 1.33 LINK C MSE D 159 N THR D 160 1555 1555 1.33 LINK C THR D 170 N MSE D 171 1555 1555 1.34 LINK C MSE D 171 N VAL D 172 1555 1555 1.33 LINK NE2 HIS A 67 NI NI A 201 1555 1555 2.19 LINK NE2 HIS A 83 NI NI A 201 1555 1555 2.26 LINK NE2 HIS A 87 NI NI A 201 1555 1555 2.15 LINK NE2 HIS B 67 NI NI B 201 1555 1555 2.39 LINK NE2 HIS B 83 NI NI B 201 1555 1555 2.36 LINK NE2 HIS B 87 NI NI B 201 1555 1555 2.38 LINK NE2 HIS C 67 NI NI C 201 1555 1555 2.19 LINK NE2 HIS C 83 NI NI C 201 1555 1555 2.53 LINK NE2 HIS C 87 NI NI C 201 1555 1555 2.43 LINK NE2 HIS D 67 NI NI D 201 1555 1555 2.31 LINK NE2 HIS D 83 NI NI D 201 1555 1555 2.47 LINK NE2 HIS D 87 NI NI D 201 1555 1555 2.30 LINK NI NI A 201 N1 IMD A 212 1555 1555 2.30 LINK NI NI B 201 N3 IMD B 211 1555 1555 2.53 LINK NI NI B 201 N3 IMD B 213 1555 1555 2.48 LINK NI NI C 201 N3 IMD C 211 1555 1555 2.49 LINK NI NI C 201 N3 IMD C 213 1555 1555 2.48 LINK NI NI D 201 N1 IMD D 212 1555 1555 2.49 SITE 1 AC1 6 HIS A 67 HIS A 83 HIS A 87 IMD A 211 SITE 2 AC1 6 IMD A 212 IMD A 213 SITE 1 AC2 6 HIS A 67 GLN A 71 ARG A 73 HIS A 83 SITE 2 AC2 6 NI A 201 IMD A 213 SITE 1 AC3 5 HIS A 67 HIS A 87 GLN A 92 NI A 201 SITE 2 AC3 5 IMD A 213 SITE 1 AC4 5 HIS A 83 LYS A 86 NI A 201 IMD A 211 SITE 2 AC4 5 IMD A 212 SITE 1 AC5 6 HIS B 67 HIS B 83 HIS B 87 IMD B 211 SITE 2 AC5 6 IMD B 212 IMD B 213 SITE 1 AC6 5 HIS B 67 GLN B 92 NI B 201 IMD B 212 SITE 2 AC6 5 IMD B 213 SITE 1 AC7 5 HIS B 83 LYS B 86 NI B 201 IMD B 211 SITE 2 AC7 5 IMD B 213 SITE 1 AC8 6 HIS B 67 ARG B 73 HIS B 83 NI B 201 SITE 2 AC8 6 IMD B 211 IMD B 212 SITE 1 AC9 6 HIS C 67 HIS C 83 HIS C 87 IMD C 211 SITE 2 AC9 6 IMD C 212 IMD C 213 SITE 1 BC1 6 HIS C 67 ARG C 73 HIS C 83 NI C 201 SITE 2 BC1 6 IMD C 212 IMD C 213 SITE 1 BC2 7 HIS C 83 LYS C 86 HIS C 87 GLN C 92 SITE 2 BC2 7 NI C 201 IMD C 211 IMD C 213 SITE 1 BC3 5 HIS C 67 GLN C 92 NI C 201 IMD C 211 SITE 2 BC3 5 IMD C 212 SITE 1 BC4 6 HIS D 67 HIS D 83 HIS D 87 IMD D 211 SITE 2 BC4 6 IMD D 212 IMD D 213 SITE 1 BC5 5 ARG D 73 HIS D 83 NI D 201 IMD D 212 SITE 2 BC5 5 IMD D 213 SITE 1 BC6 4 GLN D 92 NI D 201 IMD D 211 IMD D 213 SITE 1 BC7 5 HIS D 87 GLN D 92 NI D 201 IMD D 211 SITE 2 BC7 5 IMD D 212 CRYST1 44.351 128.681 74.566 90.00 103.23 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022547 0.000000 0.005302 0.00000 SCALE2 0.000000 0.007771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013777 0.00000