data_3KKF # _entry.id 3KKF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KKF pdb_00003kkf 10.2210/pdb3kkf/pdb RCSB RCSB056102 ? ? WWPDB D_1000056102 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 396203 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3KKF _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-11-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;Crystal structure of Putative antibiotic biosynthesis monooxygenase (NP_810307.1) from Bacteriodes thetaiotaomicron VPI-5482 at 1.30 A resolution ; _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3KKF _cell.length_a 70.740 _cell.length_b 70.740 _cell.length_c 96.021 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KKF _symmetry.Int_Tables_number 155 _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative antibiotic biosynthesis monooxygenase' 12307.491 1 ? ? 'sequence database residues 28-131' ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 non-polymer syn 'HEXAETHYLENE GLYCOL' 282.331 2 ? ? ? ? 6 water nat water 18.015 139 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Putative flavoredoxin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GAENN(MSE)VRLSRIIIDPERLEEYNAYLKEEIEVS(MSE)RLEPGVLVLYAVAEKERPNHVTILEIYADEAAYKSHIA TPHFKKYKEGTLD(MSE)VQ(MSE)LELIDATPLIPGLK(MSE)K ; _entity_poly.pdbx_seq_one_letter_code_can ;GAENNMVRLSRIIIDPERLEEYNAYLKEEIEVSMRLEPGVLVLYAVAEKERPNHVTILEIYADEAAYKSHIATPHFKKYK EGTLDMVQMLELIDATPLIPGLKMK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 396203 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ALA n 1 3 GLU n 1 4 ASN n 1 5 ASN n 1 6 MSE n 1 7 VAL n 1 8 ARG n 1 9 LEU n 1 10 SER n 1 11 ARG n 1 12 ILE n 1 13 ILE n 1 14 ILE n 1 15 ASP n 1 16 PRO n 1 17 GLU n 1 18 ARG n 1 19 LEU n 1 20 GLU n 1 21 GLU n 1 22 TYR n 1 23 ASN n 1 24 ALA n 1 25 TYR n 1 26 LEU n 1 27 LYS n 1 28 GLU n 1 29 GLU n 1 30 ILE n 1 31 GLU n 1 32 VAL n 1 33 SER n 1 34 MSE n 1 35 ARG n 1 36 LEU n 1 37 GLU n 1 38 PRO n 1 39 GLY n 1 40 VAL n 1 41 LEU n 1 42 VAL n 1 43 LEU n 1 44 TYR n 1 45 ALA n 1 46 VAL n 1 47 ALA n 1 48 GLU n 1 49 LYS n 1 50 GLU n 1 51 ARG n 1 52 PRO n 1 53 ASN n 1 54 HIS n 1 55 VAL n 1 56 THR n 1 57 ILE n 1 58 LEU n 1 59 GLU n 1 60 ILE n 1 61 TYR n 1 62 ALA n 1 63 ASP n 1 64 GLU n 1 65 ALA n 1 66 ALA n 1 67 TYR n 1 68 LYS n 1 69 SER n 1 70 HIS n 1 71 ILE n 1 72 ALA n 1 73 THR n 1 74 PRO n 1 75 HIS n 1 76 PHE n 1 77 LYS n 1 78 LYS n 1 79 TYR n 1 80 LYS n 1 81 GLU n 1 82 GLY n 1 83 THR n 1 84 LEU n 1 85 ASP n 1 86 MSE n 1 87 VAL n 1 88 GLN n 1 89 MSE n 1 90 LEU n 1 91 GLU n 1 92 LEU n 1 93 ILE n 1 94 ASP n 1 95 ALA n 1 96 THR n 1 97 PRO n 1 98 LEU n 1 99 ILE n 1 100 PRO n 1 101 GLY n 1 102 LEU n 1 103 LYS n 1 104 MSE n 1 105 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BT_1394 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 818 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8A7Y0_BACTN _struct_ref.pdbx_db_accession Q8A7Y0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;AENNMVRLSRIIIDPERLEEYNAYLKEEIEVSMRLEPGVLVLYAVAEKERPNHVTILEIYADEAAYKSHIATPHFKKYKE GTLDMVQMLELIDATPLIPGLKMK ; _struct_ref.pdbx_align_begin 28 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KKF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 105 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8A7Y0 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 131 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 131 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3KKF _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8A7Y0 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 P6G non-polymer . 'HEXAETHYLENE GLYCOL' 'POLYETHYLENE GLYCOL PEG400' 'C12 H26 O7' 282.331 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KKF # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.88 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 34.52 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M Ca(OAc)2, 40.0000% PEG-400, 0.1M HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-05-15 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97919 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength 0.97919 _diffrn_source.pdbx_wavelength_list ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3KKF _reflns.d_resolution_high 1.30 _reflns.d_resolution_low 29.185 _reflns.number_obs 22848 _reflns.pdbx_Rmerge_I_obs 0.043 _reflns.pdbx_netI_over_sigmaI 16.030 _reflns.percent_possible_obs 99.200 _reflns.B_iso_Wilson_estimate 13.027 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 7.0562 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.30 1.35 13986 ? 4495 0.569 2.0 ? ? ? ? ? 94.70 ? 1 1.35 1.40 14811 ? 4049 0.441 2.9 ? ? ? ? ? 99.90 ? 2 1.40 1.46 15388 ? 4179 0.330 3.9 ? ? ? ? ? 99.90 ? 3 1.46 1.54 16991 ? 4580 0.228 5.7 ? ? ? ? ? 99.90 ? 4 1.54 1.64 17005 ? 4557 0.155 8.1 ? ? ? ? ? 99.90 ? 5 1.64 1.76 15732 ? 4187 0.106 11.5 ? ? ? ? ? 100.00 ? 6 1.76 1.94 16986 ? 4503 0.064 18.2 ? ? ? ? ? 99.80 ? 7 1.94 2.22 16716 ? 4414 0.040 26.9 ? ? ? ? ? 99.80 ? 8 2.22 2.80 16915 ? 4439 0.029 35.6 ? ? ? ? ? 100.00 ? 9 2.80 29.185 16691 ? 4396 0.023 44.5 ? ? ? ? ? 99.10 ? 10 # _refine.entry_id 3KKF _refine.ls_d_res_high 1.300 _refine.ls_d_res_low 29.185 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.460 _refine.ls_number_reflns_obs 22844 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. CALCIUM IONS (CA) FROM THE CRYSTALLIZATION SOLUTIONS HAVE BEEN MODELED INTO THE STRUCTURE BASED ON METAL EXCITATION SCAN AND COORDINATION GEOMETRY. 4. ETHYLENE GLYCOL (EDO) AND POLYETHYLENE GLYCOL (PEG AND P6G) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED INTO THE SOLVENT STRUCTURE. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.136 _refine.ls_R_factor_R_work 0.135 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.167 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1174 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 15.901 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.820 _refine.aniso_B[2][2] -0.820 _refine.aniso_B[3][3] 1.230 _refine.aniso_B[1][2] -0.410 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.977 _refine.correlation_coeff_Fo_to_Fc_free 0.963 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.057 _refine.pdbx_overall_ESU_R_Free 0.051 _refine.overall_SU_ML 0.028 _refine.overall_SU_B 1.479 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 55.74 _refine.B_iso_min 8.38 _refine.occupancy_max 1.00 _refine.occupancy_min 0.08 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 959 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 54 _refine_hist.number_atoms_solvent 147 _refine_hist.number_atoms_total 1160 _refine_hist.d_res_high 1.300 _refine_hist.d_res_low 29.185 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1042 0.017 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 777 0.005 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 1414 1.515 2.048 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 1939 0.898 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 140 4.268 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 46 33.432 25.217 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 218 9.802 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 6 10.141 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 156 0.101 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 1112 0.006 0.021 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 178 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 593 1.104 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 228 0.458 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 984 1.744 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 449 2.512 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 409 3.801 4.500 ? ? r_rigid_bond_restr 'X-RAY DIFFRACTION' 1819 0.514 1.000 ? ? r_sphericity_free 'X-RAY DIFFRACTION' 149 9.523 5.000 ? ? r_sphericity_bonded 'X-RAY DIFFRACTION' 1788 4.143 5.000 ? ? # _refine_ls_shell.d_res_high 1.300 _refine_ls_shell.d_res_low 1.334 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 94.470 _refine_ls_shell.number_reflns_R_work 1509 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.217 _refine_ls_shell.R_factor_R_free 0.265 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 80 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1589 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KKF _struct.title ;Crystal structure of Putative antibiotic biosynthesis monooxygenase (NP_810307.1) from Bacteriodes thetaiotaomicron VPI-5482 at 1.30 A resolution ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative antibiotic biosynthesis monooxygenase, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 3KKF # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 5 ? H N N 6 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 1 ? ASN A 5 ? GLY A 0 ASN A 31 5 ? 5 HELX_P HELX_P2 2 ARG A 18 ? GLU A 37 ? ARG A 44 GLU A 63 1 ? 20 HELX_P HELX_P3 3 ASP A 63 ? ALA A 72 ? ASP A 89 ALA A 98 1 ? 10 HELX_P HELX_P4 4 THR A 73 ? LEU A 84 ? THR A 99 LEU A 110 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASN 5 C ? ? ? 1_555 A MSE 6 N ? ? A ASN 31 A MSE 32 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale2 covale both ? A MSE 6 C ? ? ? 1_555 A VAL 7 N ? ? A MSE 32 A VAL 33 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale3 covale both ? A SER 33 C ? ? ? 1_555 A MSE 34 N ? ? A SER 59 A MSE 60 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale4 covale both ? A MSE 34 C ? ? ? 1_555 A ARG 35 N ? ? A MSE 60 A ARG 61 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A ASP 85 C ? ? ? 1_555 A MSE 86 N ? ? A ASP 111 A MSE 112 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale6 covale both ? A MSE 86 C ? ? ? 1_555 A VAL 87 N ? ? A MSE 112 A VAL 113 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale7 covale both ? A GLN 88 C ? ? ? 1_555 A MSE 89 N ? ? A GLN 114 A MSE 115 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale8 covale both ? A MSE 89 C ? ? ? 1_555 A LEU 90 N ? ? A MSE 115 A LEU 116 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale9 covale both ? A LYS 103 C ? ? ? 1_555 A MSE 104 N ? ? A LYS 129 A MSE 130 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale10 covale both ? A MSE 104 C ? ? ? 1_555 A LYS 105 N ? ? A MSE 130 A LYS 131 1_555 ? ? ? ? ? ? ? 1.319 ? ? metalc1 metalc ? ? A GLY 1 O ? ? ? 1_555 C CA . CA ? ? A GLY 0 A CA 202 1_555 ? ? ? ? ? ? ? 2.396 ? ? metalc2 metalc ? ? A ASN 4 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 30 A CA 202 1_555 ? ? ? ? ? ? ? 2.292 ? ? metalc3 metalc ? ? A ASN 5 OD1 ? ? ? 1_555 C CA . CA ? ? A ASN 31 A CA 202 1_555 ? ? ? ? ? ? ? 2.399 ? ? metalc4 metalc ? ? A ASP 15 OD1 A ? ? 1_555 B CA . CA ? ? A ASP 41 A CA 201 1_555 ? ? ? ? ? ? ? 2.469 ? ? metalc5 metalc ? ? A ASP 15 OD1 B ? ? 1_555 B CA . CA ? ? A ASP 41 A CA 201 1_555 ? ? ? ? ? ? ? 2.272 ? ? metalc6 metalc ? ? A GLU 17 OE1 ? ? ? 1_555 B CA . CA ? ? A GLU 43 A CA 201 1_555 ? ? ? ? ? ? ? 2.070 ? ? metalc7 metalc ? ? A GLU 50 OE1 A ? ? 1_555 B CA . CA ? ? A GLU 76 A CA 201 3_655 ? ? ? ? ? ? ? 3.020 ? ? metalc8 metalc ? ? A GLU 50 OE1 B ? ? 1_555 B CA . CA ? ? A GLU 76 A CA 201 3_655 ? ? ? ? ? ? ? 2.451 ? ? metalc9 metalc ? ? A GLU 50 OE2 A ? ? 1_555 B CA . CA ? ? A GLU 76 A CA 201 3_655 ? ? ? ? ? ? ? 2.034 ? ? metalc10 metalc ? ? A ALA 62 O ? ? ? 1_555 C CA . CA ? ? A ALA 88 A CA 202 1_555 ? ? ? ? ? ? ? 2.331 ? ? metalc11 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 201 A HOH 332 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc12 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O B ? A CA 201 A HOH 395 2_545 ? ? ? ? ? ? ? 2.573 ? ? metalc13 metalc ? ? B CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 201 A HOH 443 1_555 ? ? ? ? ? ? ? 2.430 ? ? metalc14 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 202 A HOH 225 1_555 ? ? ? ? ? ? ? 2.381 ? ? metalc15 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? A CA 202 A HOH 356 1_555 ? ? ? ? ? ? ? 2.384 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 40 ? ALA A 47 ? VAL A 66 ALA A 73 A 2 HIS A 54 ? TYR A 61 ? HIS A 80 TYR A 87 A 3 MSE A 6 ? ILE A 14 ? MSE A 32 ILE A 40 A 4 VAL A 87 ? ALA A 95 ? VAL A 113 ALA A 121 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 44 ? N TYR A 70 O LEU A 58 ? O LEU A 84 A 2 3 O VAL A 55 ? O VAL A 81 N ILE A 12 ? N ILE A 38 A 3 4 N LEU A 9 ? N LEU A 35 O ILE A 93 ? O ILE A 119 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 201 ? 6 'BINDING SITE FOR RESIDUE CA A 201' AC2 Software A CA 202 ? 6 'BINDING SITE FOR RESIDUE CA A 202' AC3 Software A ACT 203 ? 6 'BINDING SITE FOR RESIDUE ACT A 203' AC4 Software A EDO 204 ? 7 'BINDING SITE FOR RESIDUE EDO A 204' AC5 Software A P6G 205 ? 6 'BINDING SITE FOR RESIDUE P6G A 205' AC6 Software A P6G 206 ? 12 'BINDING SITE FOR RESIDUE P6G A 206' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 15 ? ASP A 41 . ? 1_555 ? 2 AC1 6 GLU A 17 ? GLU A 43 . ? 1_555 ? 3 AC1 6 GLU A 50 ? GLU A 76 . ? 2_545 ? 4 AC1 6 HOH H . ? HOH A 332 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH A 395 . ? 2_545 ? 6 AC1 6 HOH H . ? HOH A 443 . ? 1_555 ? 7 AC2 6 GLY A 1 ? GLY A 0 . ? 1_555 ? 8 AC2 6 ASN A 4 ? ASN A 30 . ? 1_555 ? 9 AC2 6 ASN A 5 ? ASN A 31 . ? 1_555 ? 10 AC2 6 ALA A 62 ? ALA A 88 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH A 225 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH A 356 . ? 1_555 ? 13 AC3 6 LEU A 26 ? LEU A 52 . ? 1_555 ? 14 AC3 6 GLU A 29 ? GLU A 55 . ? 1_555 ? 15 AC3 6 HIS A 70 ? HIS A 96 . ? 1_555 ? 16 AC3 6 PHE A 76 ? PHE A 102 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH A 379 . ? 1_555 ? 18 AC3 6 HOH H . ? HOH A 397 . ? 1_555 ? 19 AC4 7 ALA A 2 ? ALA A 28 . ? 1_555 ? 20 AC4 7 GLU A 3 ? GLU A 29 . ? 1_555 ? 21 AC4 7 ASN A 5 ? ASN A 31 . ? 1_555 ? 22 AC4 7 PRO A 97 ? PRO A 123 . ? 1_555 ? 23 AC4 7 HOH H . ? HOH A 352 . ? 1_555 ? 24 AC4 7 HOH H . ? HOH A 352 . ? 16_545 ? 25 AC4 7 HOH H . ? HOH A 360 . ? 1_555 ? 26 AC5 6 ALA A 24 ? ALA A 50 . ? 1_555 ? 27 AC5 6 GLU A 28 ? GLU A 54 . ? 6_555 ? 28 AC5 6 GLU A 28 ? GLU A 54 . ? 1_555 ? 29 AC5 6 LYS A 78 ? LYS A 104 . ? 1_555 ? 30 AC5 6 LYS A 78 ? LYS A 104 . ? 6_555 ? 31 AC5 6 HOH H . ? HOH A 362 . ? 6_555 ? 32 AC6 12 ILE A 12 ? ILE A 38 . ? 1_555 ? 33 AC6 12 TYR A 67 ? TYR A 93 . ? 1_555 ? 34 AC6 12 ILE A 71 ? ILE A 97 . ? 1_555 ? 35 AC6 12 PHE A 76 ? PHE A 102 . ? 1_555 ? 36 AC6 12 TYR A 79 ? TYR A 105 . ? 1_555 ? 37 AC6 12 LYS A 80 ? LYS A 106 . ? 1_555 ? 38 AC6 12 LEU A 84 ? LEU A 110 . ? 11_445 ? 39 AC6 12 LEU A 90 ? LEU A 116 . ? 1_555 ? 40 AC6 12 HOH H . ? HOH A 343 . ? 1_555 ? 41 AC6 12 HOH H . ? HOH A 380 . ? 1_555 ? 42 AC6 12 HOH H . ? HOH A 382 . ? 1_555 ? 43 AC6 12 HOH H . ? HOH A 397 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KKF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3KKF _atom_sites.fract_transf_matrix[1][1] 0.014136 _atom_sites.fract_transf_matrix[1][2] 0.008162 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016323 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010414 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CA N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 ALA 2 28 28 ALA ALA A . n A 1 3 GLU 3 29 29 GLU GLU A . n A 1 4 ASN 4 30 30 ASN ASN A . n A 1 5 ASN 5 31 31 ASN ASN A . n A 1 6 MSE 6 32 32 MSE MSE A . n A 1 7 VAL 7 33 33 VAL VAL A . n A 1 8 ARG 8 34 34 ARG ARG A . n A 1 9 LEU 9 35 35 LEU LEU A . n A 1 10 SER 10 36 36 SER SER A . n A 1 11 ARG 11 37 37 ARG ARG A . n A 1 12 ILE 12 38 38 ILE ILE A . n A 1 13 ILE 13 39 39 ILE ILE A . n A 1 14 ILE 14 40 40 ILE ILE A . n A 1 15 ASP 15 41 41 ASP ASP A . n A 1 16 PRO 16 42 42 PRO PRO A . n A 1 17 GLU 17 43 43 GLU GLU A . n A 1 18 ARG 18 44 44 ARG ARG A . n A 1 19 LEU 19 45 45 LEU LEU A . n A 1 20 GLU 20 46 46 GLU GLU A . n A 1 21 GLU 21 47 47 GLU GLU A . n A 1 22 TYR 22 48 48 TYR TYR A . n A 1 23 ASN 23 49 49 ASN ASN A . n A 1 24 ALA 24 50 50 ALA ALA A . n A 1 25 TYR 25 51 51 TYR TYR A . n A 1 26 LEU 26 52 52 LEU LEU A . n A 1 27 LYS 27 53 53 LYS LYS A . n A 1 28 GLU 28 54 54 GLU GLU A . n A 1 29 GLU 29 55 55 GLU GLU A . n A 1 30 ILE 30 56 56 ILE ILE A . n A 1 31 GLU 31 57 57 GLU GLU A . n A 1 32 VAL 32 58 58 VAL VAL A . n A 1 33 SER 33 59 59 SER SER A . n A 1 34 MSE 34 60 60 MSE MSE A . n A 1 35 ARG 35 61 61 ARG ARG A . n A 1 36 LEU 36 62 62 LEU LEU A . n A 1 37 GLU 37 63 63 GLU GLU A . n A 1 38 PRO 38 64 64 PRO PRO A . n A 1 39 GLY 39 65 65 GLY GLY A . n A 1 40 VAL 40 66 66 VAL VAL A . n A 1 41 LEU 41 67 67 LEU LEU A . n A 1 42 VAL 42 68 68 VAL VAL A . n A 1 43 LEU 43 69 69 LEU LEU A . n A 1 44 TYR 44 70 70 TYR TYR A . n A 1 45 ALA 45 71 71 ALA ALA A . n A 1 46 VAL 46 72 72 VAL VAL A . n A 1 47 ALA 47 73 73 ALA ALA A . n A 1 48 GLU 48 74 74 GLU GLU A . n A 1 49 LYS 49 75 75 LYS LYS A . n A 1 50 GLU 50 76 76 GLU GLU A . n A 1 51 ARG 51 77 77 ARG ARG A . n A 1 52 PRO 52 78 78 PRO PRO A . n A 1 53 ASN 53 79 79 ASN ASN A . n A 1 54 HIS 54 80 80 HIS HIS A . n A 1 55 VAL 55 81 81 VAL VAL A . n A 1 56 THR 56 82 82 THR THR A . n A 1 57 ILE 57 83 83 ILE ILE A . n A 1 58 LEU 58 84 84 LEU LEU A . n A 1 59 GLU 59 85 85 GLU GLU A . n A 1 60 ILE 60 86 86 ILE ILE A . n A 1 61 TYR 61 87 87 TYR TYR A . n A 1 62 ALA 62 88 88 ALA ALA A . n A 1 63 ASP 63 89 89 ASP ASP A . n A 1 64 GLU 64 90 90 GLU GLU A . n A 1 65 ALA 65 91 91 ALA ALA A . n A 1 66 ALA 66 92 92 ALA ALA A . n A 1 67 TYR 67 93 93 TYR TYR A . n A 1 68 LYS 68 94 94 LYS LYS A . n A 1 69 SER 69 95 95 SER SER A . n A 1 70 HIS 70 96 96 HIS HIS A . n A 1 71 ILE 71 97 97 ILE ILE A . n A 1 72 ALA 72 98 98 ALA ALA A . n A 1 73 THR 73 99 99 THR THR A . n A 1 74 PRO 74 100 100 PRO PRO A . n A 1 75 HIS 75 101 101 HIS HIS A . n A 1 76 PHE 76 102 102 PHE PHE A . n A 1 77 LYS 77 103 103 LYS LYS A . n A 1 78 LYS 78 104 104 LYS LYS A . n A 1 79 TYR 79 105 105 TYR TYR A . n A 1 80 LYS 80 106 106 LYS LYS A . n A 1 81 GLU 81 107 107 GLU GLU A . n A 1 82 GLY 82 108 108 GLY GLY A . n A 1 83 THR 83 109 109 THR THR A . n A 1 84 LEU 84 110 110 LEU LEU A . n A 1 85 ASP 85 111 111 ASP ASP A . n A 1 86 MSE 86 112 112 MSE MSE A . n A 1 87 VAL 87 113 113 VAL VAL A . n A 1 88 GLN 88 114 114 GLN GLN A . n A 1 89 MSE 89 115 115 MSE MSE A . n A 1 90 LEU 90 116 116 LEU LEU A . n A 1 91 GLU 91 117 117 GLU GLU A . n A 1 92 LEU 92 118 118 LEU LEU A . n A 1 93 ILE 93 119 119 ILE ILE A . n A 1 94 ASP 94 120 120 ASP ASP A . n A 1 95 ALA 95 121 121 ALA ALA A . n A 1 96 THR 96 122 122 THR THR A . n A 1 97 PRO 97 123 123 PRO PRO A . n A 1 98 LEU 98 124 124 LEU LEU A . n A 1 99 ILE 99 125 125 ILE ILE A . n A 1 100 PRO 100 126 126 PRO PRO A . n A 1 101 GLY 101 127 127 GLY GLY A . n A 1 102 LEU 102 128 128 LEU LEU A . n A 1 103 LYS 103 129 129 LYS LYS A . n A 1 104 MSE 104 130 130 MSE MSE A . n A 1 105 LYS 105 131 131 LYS LYS A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 201 201 CA CA A . C 2 CA 1 202 202 CA CA A . D 3 ACT 1 203 203 ACT ACT A . E 4 EDO 1 204 204 EDO EDO A . F 5 P6G 1 205 205 P6G P6G A . G 5 P6G 1 206 206 P6G P6G A . H 6 HOH 1 207 207 HOH HOH A . H 6 HOH 2 208 208 HOH HOH A . H 6 HOH 3 209 209 HOH HOH A . H 6 HOH 4 210 210 HOH HOH A . H 6 HOH 5 211 211 HOH HOH A . H 6 HOH 6 212 212 HOH HOH A . H 6 HOH 7 213 213 HOH HOH A . H 6 HOH 8 214 214 HOH HOH A . H 6 HOH 9 215 215 HOH HOH A . H 6 HOH 10 216 216 HOH HOH A . H 6 HOH 11 217 217 HOH HOH A . H 6 HOH 12 218 218 HOH HOH A . H 6 HOH 13 219 219 HOH HOH A . H 6 HOH 14 220 220 HOH HOH A . H 6 HOH 15 221 221 HOH HOH A . H 6 HOH 16 222 222 HOH HOH A . H 6 HOH 17 223 223 HOH HOH A . H 6 HOH 18 224 224 HOH HOH A . H 6 HOH 19 225 225 HOH HOH A . H 6 HOH 20 226 226 HOH HOH A . H 6 HOH 21 227 227 HOH HOH A . H 6 HOH 22 332 332 HOH HOH A . H 6 HOH 23 333 333 HOH HOH A . H 6 HOH 24 334 334 HOH HOH A . H 6 HOH 25 335 335 HOH HOH A . H 6 HOH 26 336 336 HOH HOH A . H 6 HOH 27 337 337 HOH HOH A . H 6 HOH 28 338 338 HOH HOH A . H 6 HOH 29 339 339 HOH HOH A . H 6 HOH 30 340 340 HOH HOH A . H 6 HOH 31 341 341 HOH HOH A . H 6 HOH 32 342 342 HOH HOH A . H 6 HOH 33 343 343 HOH HOH A . H 6 HOH 34 344 344 HOH HOH A . H 6 HOH 35 345 345 HOH HOH A . H 6 HOH 36 346 346 HOH HOH A . H 6 HOH 37 347 347 HOH HOH A . H 6 HOH 38 348 348 HOH HOH A . H 6 HOH 39 349 349 HOH HOH A . H 6 HOH 40 350 350 HOH HOH A . H 6 HOH 41 351 351 HOH HOH A . H 6 HOH 42 352 352 HOH HOH A . H 6 HOH 43 353 353 HOH HOH A . H 6 HOH 44 354 354 HOH HOH A . H 6 HOH 45 355 355 HOH HOH A . H 6 HOH 46 356 356 HOH HOH A . H 6 HOH 47 357 357 HOH HOH A . H 6 HOH 48 358 358 HOH HOH A . H 6 HOH 49 359 359 HOH HOH A . H 6 HOH 50 360 360 HOH HOH A . H 6 HOH 51 361 361 HOH HOH A . H 6 HOH 52 362 362 HOH HOH A . H 6 HOH 53 363 363 HOH HOH A . H 6 HOH 54 364 364 HOH HOH A . H 6 HOH 55 365 365 HOH HOH A . H 6 HOH 56 366 366 HOH HOH A . H 6 HOH 57 367 367 HOH HOH A . H 6 HOH 58 368 368 HOH HOH A . H 6 HOH 59 369 369 HOH HOH A . H 6 HOH 60 370 370 HOH HOH A . H 6 HOH 61 371 371 HOH HOH A . H 6 HOH 62 372 372 HOH HOH A . H 6 HOH 63 373 373 HOH HOH A . H 6 HOH 64 374 374 HOH HOH A . H 6 HOH 65 375 375 HOH HOH A . H 6 HOH 66 376 376 HOH HOH A . H 6 HOH 67 377 377 HOH HOH A . H 6 HOH 68 378 378 HOH HOH A . H 6 HOH 69 379 379 HOH HOH A . H 6 HOH 70 380 380 HOH HOH A . H 6 HOH 71 381 381 HOH HOH A . H 6 HOH 72 382 382 HOH HOH A . H 6 HOH 73 383 383 HOH HOH A . H 6 HOH 74 384 384 HOH HOH A . H 6 HOH 75 385 385 HOH HOH A . H 6 HOH 76 386 386 HOH HOH A . H 6 HOH 77 387 387 HOH HOH A . H 6 HOH 78 388 388 HOH HOH A . H 6 HOH 79 389 389 HOH HOH A . H 6 HOH 80 390 390 HOH HOH A . H 6 HOH 81 391 391 HOH HOH A . H 6 HOH 82 392 392 HOH HOH A . H 6 HOH 83 393 393 HOH HOH A . H 6 HOH 84 394 394 HOH HOH A . H 6 HOH 85 395 395 HOH HOH A . H 6 HOH 86 396 396 HOH HOH A . H 6 HOH 87 397 397 HOH HOH A . H 6 HOH 88 398 398 HOH HOH A . H 6 HOH 89 399 399 HOH HOH A . H 6 HOH 90 400 400 HOH HOH A . H 6 HOH 91 401 401 HOH HOH A . H 6 HOH 92 402 402 HOH HOH A . H 6 HOH 93 403 403 HOH HOH A . H 6 HOH 94 404 404 HOH HOH A . H 6 HOH 95 405 405 HOH HOH A . H 6 HOH 96 406 406 HOH HOH A . H 6 HOH 97 407 407 HOH HOH A . H 6 HOH 98 408 408 HOH HOH A . H 6 HOH 99 409 409 HOH HOH A . H 6 HOH 100 410 410 HOH HOH A . H 6 HOH 101 411 411 HOH HOH A . H 6 HOH 102 412 412 HOH HOH A . H 6 HOH 103 413 413 HOH HOH A . H 6 HOH 104 414 414 HOH HOH A . H 6 HOH 105 415 415 HOH HOH A . H 6 HOH 106 416 416 HOH HOH A . H 6 HOH 107 417 417 HOH HOH A . H 6 HOH 108 418 418 HOH HOH A . H 6 HOH 109 419 419 HOH HOH A . H 6 HOH 110 420 420 HOH HOH A . H 6 HOH 111 421 421 HOH HOH A . H 6 HOH 112 422 422 HOH HOH A . H 6 HOH 113 423 423 HOH HOH A . H 6 HOH 114 424 424 HOH HOH A . H 6 HOH 115 425 425 HOH HOH A . H 6 HOH 116 426 426 HOH HOH A . H 6 HOH 117 427 427 HOH HOH A . H 6 HOH 118 428 428 HOH HOH A . H 6 HOH 119 429 429 HOH HOH A . H 6 HOH 120 430 430 HOH HOH A . H 6 HOH 121 431 431 HOH HOH A . H 6 HOH 122 432 432 HOH HOH A . H 6 HOH 123 433 433 HOH HOH A . H 6 HOH 124 434 434 HOH HOH A . H 6 HOH 125 435 435 HOH HOH A . H 6 HOH 126 436 436 HOH HOH A . H 6 HOH 127 437 437 HOH HOH A . H 6 HOH 128 438 438 HOH HOH A . H 6 HOH 129 439 439 HOH HOH A . H 6 HOH 130 440 440 HOH HOH A . H 6 HOH 131 441 441 HOH HOH A . H 6 HOH 132 442 442 HOH HOH A . H 6 HOH 133 443 443 HOH HOH A . H 6 HOH 134 444 444 HOH HOH A . H 6 HOH 135 445 445 HOH HOH A . H 6 HOH 136 446 446 HOH HOH A . H 6 HOH 137 447 447 HOH HOH A . H 6 HOH 138 448 448 HOH HOH A . H 6 HOH 139 449 449 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 6 A MSE 32 ? MET SELENOMETHIONINE 2 A MSE 34 A MSE 60 ? MET SELENOMETHIONINE 3 A MSE 86 A MSE 112 ? MET SELENOMETHIONINE 4 A MSE 89 A MSE 115 ? MET SELENOMETHIONINE 5 A MSE 104 A MSE 130 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2 A,B,C,D,E,F,G,H 2 1,3,4,5,6,2 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5270 ? 1 MORE -67 ? 1 'SSA (A^2)' 10160 ? 2 'ABSA (A^2)' 19650 ? 2 MORE -234 ? 2 'SSA (A^2)' 26640 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 12_555 -x+2/3,-x+y+1/3,-z+1/3 -0.5000000000 -0.8660254038 0.0000000000 35.3700000000 -0.8660254038 0.5000000000 0.0000000000 20.4208790212 0.0000000000 0.0000000000 -1.0000000000 32.0070000000 3 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5000000000 -0.8660254038 0.0000000000 35.3700000000 0.8660254038 -0.5000000000 0.0000000000 -61.2626370637 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5000000000 0.8660254038 0.0000000000 70.7400000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 10_545 y+2/3,x-2/3,-z+1/3 -0.5000000000 0.8660254038 0.0000000000 70.7400000000 0.8660254038 0.5000000000 0.0000000000 -40.8417580425 0.0000000000 0.0000000000 -1.0000000000 32.0070000000 6 'crystal symmetry operation' 11_445 x-y-1/3,-y-2/3,-z+1/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -40.8417580425 0.0000000000 0.0000000000 -1.0000000000 32.0070000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A P6G 205 ? F P6G . 2 1 A HOH 220 ? H HOH . 3 1 A HOH 227 ? H HOH . 4 1 A HOH 352 ? H HOH . 5 1 A HOH 353 ? H HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A GLY 1 ? A GLY 0 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OD1 ? A ASN 4 ? A ASN 30 ? 1_555 84.4 ? 2 O ? A GLY 1 ? A GLY 0 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OD1 ? A ASN 5 ? A ASN 31 ? 1_555 70.9 ? 3 OD1 ? A ASN 4 ? A ASN 30 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 OD1 ? A ASN 5 ? A ASN 31 ? 1_555 119.5 ? 4 O ? A GLY 1 ? A GLY 0 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? A ALA 62 ? A ALA 88 ? 1_555 139.5 ? 5 OD1 ? A ASN 4 ? A ASN 30 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? A ALA 62 ? A ALA 88 ? 1_555 86.6 ? 6 OD1 ? A ASN 5 ? A ASN 31 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? A ALA 62 ? A ALA 88 ? 1_555 79.7 ? 7 O ? A GLY 1 ? A GLY 0 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 225 ? 1_555 95.6 ? 8 OD1 ? A ASN 4 ? A ASN 30 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 225 ? 1_555 163.1 ? 9 OD1 ? A ASN 5 ? A ASN 31 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 225 ? 1_555 76.1 ? 10 O ? A ALA 62 ? A ALA 88 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 225 ? 1_555 103.8 ? 11 O ? A GLY 1 ? A GLY 0 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 356 ? 1_555 138.3 ? 12 OD1 ? A ASN 4 ? A ASN 30 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 356 ? 1_555 87.4 ? 13 OD1 ? A ASN 5 ? A ASN 31 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 356 ? 1_555 145.1 ? 14 O ? A ALA 62 ? A ALA 88 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 356 ? 1_555 80.3 ? 15 O ? H HOH . ? A HOH 225 ? 1_555 CA ? C CA . ? A CA 202 ? 1_555 O ? H HOH . ? A HOH 356 ? 1_555 81.3 ? 16 OD1 A A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OD1 B A ASP 15 ? A ASP 41 ? 1_555 15.9 ? 17 OD1 A A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 17 ? A GLU 43 ? 1_555 76.2 ? 18 OD1 B A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 ? A GLU 17 ? A GLU 43 ? 1_555 91.8 ? 19 OD1 A A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 A A GLU 50 ? A GLU 76 ? 1_555 78.7 ? 20 OD1 B A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 A A GLU 50 ? A GLU 76 ? 1_555 81.0 ? 21 OE1 ? A GLU 17 ? A GLU 43 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 A A GLU 50 ? A GLU 76 ? 1_555 69.2 ? 22 OD1 A A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 B A GLU 50 ? A GLU 76 ? 1_555 78.1 ? 23 OD1 B A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 B A GLU 50 ? A GLU 76 ? 1_555 80.5 ? 24 OE1 ? A GLU 17 ? A GLU 43 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 B A GLU 50 ? A GLU 76 ? 1_555 68.8 ? 25 OE1 A A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE1 B A GLU 50 ? A GLU 76 ? 1_555 0.7 ? 26 OD1 A A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 A A GLU 50 ? A GLU 76 ? 1_555 75.7 ? 27 OD1 B A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 A A GLU 50 ? A GLU 76 ? 1_555 78.4 ? 28 OE1 ? A GLU 17 ? A GLU 43 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 A A GLU 50 ? A GLU 76 ? 1_555 67.5 ? 29 OE1 A A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 A A GLU 50 ? A GLU 76 ? 1_555 3.2 ? 30 OE1 B A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 OE2 A A GLU 50 ? A GLU 76 ? 1_555 2.5 ? 31 OD1 A A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 332 ? 1_555 168.4 ? 32 OD1 B A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 332 ? 1_555 167.5 ? 33 OE1 ? A GLU 17 ? A GLU 43 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 332 ? 1_555 98.4 ? 34 OE1 A A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 332 ? 1_555 109.4 ? 35 OE1 B A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 332 ? 1_555 109.9 ? 36 OE2 A A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 332 ? 1_555 112.1 ? 37 OD1 A A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O B H HOH . ? A HOH 395 ? 2_545 92.2 ? 38 OD1 B A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O B H HOH . ? A HOH 395 ? 2_545 77.7 ? 39 OE1 ? A GLU 17 ? A GLU 43 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O B H HOH . ? A HOH 395 ? 2_545 163.3 ? 40 OE1 A A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O B H HOH . ? A HOH 395 ? 2_545 120.9 ? 41 OE1 B A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O B H HOH . ? A HOH 395 ? 2_545 121.2 ? 42 OE2 A A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O B H HOH . ? A HOH 395 ? 2_545 121.8 ? 43 O ? H HOH . ? A HOH 332 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O B H HOH . ? A HOH 395 ? 2_545 90.6 ? 44 OD1 A A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 443 ? 1_555 73.8 ? 45 OD1 B A ASP 15 ? A ASP 41 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 443 ? 1_555 76.5 ? 46 OE1 ? A GLU 17 ? A GLU 43 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 443 ? 1_555 90.4 ? 47 OE1 A A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 443 ? 1_555 149.0 ? 48 OE1 B A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 443 ? 1_555 148.3 ? 49 OE2 A A GLU 50 ? A GLU 76 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 443 ? 1_555 145.8 ? 50 O ? H HOH . ? A HOH 332 ? 1_555 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 443 ? 1_555 96.2 ? 51 O B H HOH . ? A HOH 395 ? 2_545 CA ? B CA . ? A CA 201 ? 1_555 O ? H HOH . ? A HOH 443 ? 1_555 74.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' pdbx_distant_solvent_atoms 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' pdbx_struct_special_symmetry 5 4 'Structure model' software 6 4 'Structure model' struct_conn 7 4 'Structure model' struct_conn_type 8 5 'Structure model' database_2 9 5 'Structure model' pdbx_struct_conn_angle 10 5 'Structure model' struct_conn 11 5 'Structure model' struct_conn_type 12 5 'Structure model' struct_ref_seq_dif 13 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn_type.id' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 26 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 27 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 28 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 29 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 30 5 'Structure model' '_pdbx_struct_conn_angle.value' 31 5 'Structure model' '_struct_conn.conn_type_id' 32 5 'Structure model' '_struct_conn.id' 33 5 'Structure model' '_struct_conn.pdbx_dist_value' 34 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 35 5 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 36 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 37 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 38 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 39 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 40 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 41 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 42 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 43 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 44 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 45 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 46 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 47 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 48 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 49 5 'Structure model' '_struct_conn.ptnr2_symmetry' 50 5 'Structure model' '_struct_conn_type.id' 51 5 'Structure model' '_struct_ref_seq_dif.details' 52 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 53 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 54 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method SAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_entry_details.entry_id 3KKF _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT (28-131) WAS EXPRESSED WITH THE PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 341 ? 6.72 . 2 1 O ? A HOH 403 ? 7.07 . 3 1 O ? A HOH 419 ? 6.83 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 53 ? NZ ? A LYS 27 NZ 2 1 Y 1 A ARG 61 ? NE ? A ARG 35 NE 3 1 Y 1 A ARG 61 ? CZ ? A ARG 35 CZ 4 1 Y 1 A ARG 61 ? NH1 ? A ARG 35 NH1 5 1 Y 1 A ARG 61 ? NH2 ? A ARG 35 NH2 6 1 Y 1 A ASP 111 ? CG ? A ASP 85 CG 7 1 Y 1 A ASP 111 ? OD1 ? A ASP 85 OD1 8 1 Y 1 A ASP 111 ? OD2 ? A ASP 85 OD2 9 1 N 1 A P6G 205 ? O19 ? F P6G 1 O19 10 1 N 1 A P6G 206 ? C14 ? G P6G 1 C14 11 1 N 1 A P6G 206 ? C15 ? G P6G 1 C15 12 1 N 1 A P6G 206 ? O16 ? G P6G 1 O16 13 1 N 1 A P6G 206 ? C17 ? G P6G 1 C17 14 1 N 1 A P6G 206 ? C18 ? G P6G 1 C18 15 1 N 1 A P6G 206 ? O19 ? G P6G 1 O19 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'ACETATE ION' ACT 4 1,2-ETHANEDIOL EDO 5 'HEXAETHYLENE GLYCOL' P6G 6 water HOH #