HEADER OXIDOREDUCTASE 05-NOV-09 3KKF TITLE CRYSTAL STRUCTURE OF PUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE TITLE 2 (NP_810307.1) FROM BACTERIODES THETAIOTAOMICRON VPI-5482 AT 1.30 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 28-131; COMPND 5 SYNONYM: PUTATIVE FLAVOREDOXIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_1394; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE ANTIBIOTIC BIOSYNTHESIS MONOOXYGENASE, STRUCTURAL GENOMICS, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, PSI-2, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 3KKF 1 REMARK SEQADV LINK REVDAT 3 17-JUL-19 3KKF 1 REMARK LINK REVDAT 2 01-NOV-17 3KKF 1 REMARK REVDAT 1 01-DEC-09 3KKF 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ANTIBIOTIC BIOSYNTHESIS JRNL TITL 2 MONOOXYGENASE (NP_810307.1) FROM BACTERIODES JRNL TITL 3 THETAIOTAOMICRON VPI-5482 AT 1.30 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0053 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1174 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1509 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.47 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 838 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -0.82000 REMARK 3 B33 (A**2) : 1.23000 REMARK 3 B12 (A**2) : -0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.057 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.051 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.479 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1042 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 777 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1414 ; 1.515 ; 2.048 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1939 ; 0.898 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 140 ; 4.268 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 46 ;33.432 ;25.217 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 218 ; 9.802 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;10.141 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1112 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 178 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 593 ; 1.104 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 228 ; 0.458 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 984 ; 1.744 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 449 ; 2.512 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 409 ; 3.801 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1819 ; 0.514 ; 1.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 149 ; 9.523 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 1788 ; 4.143 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. CALCIUM IONS (CA) FROM THE REMARK 3 CRYSTALLIZATION SOLUTIONS HAVE BEEN MODELED INTO THE STRUCTURE REMARK 3 BASED ON METAL EXCITATION SCAN AND COORDINATION GEOMETRY. 4. REMARK 3 ETHYLENE GLYCOL (EDO) AND POLYETHYLENE GLYCOL (PEG AND P6G) FROM REMARK 3 THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED REMARK 3 INTO THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 3KKF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : FLAT COLLIMATING MIRROR, TOROID REMARK 200 FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22848 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 29.185 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.056 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.35 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2000M CA(OAC)2, 40.0000% PEG-400, REMARK 280 0.1M HEPES PH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 35.37000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 20.42088 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 32.00700 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 35.37000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 20.42088 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 32.00700 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 35.37000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 20.42088 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 32.00700 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 35.37000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 20.42088 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 32.00700 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 35.37000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 20.42088 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 32.00700 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 35.37000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 20.42088 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 32.00700 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 40.84176 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 64.01400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 40.84176 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 64.01400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 40.84176 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 64.01400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 40.84176 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 64.01400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 40.84176 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 64.01400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 40.84176 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 64.01400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 35.37000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 20.42088 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 32.00700 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -234.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 35.37000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -61.26264 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 70.74000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 70.74000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -40.84176 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 32.00700 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 -40.84176 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 32.00700 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 35.37000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 20.42088 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 32.00700 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O10 P6G A 205 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 220 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 227 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 NZ REMARK 470 ARG A 61 NE CZ NH1 NH2 REMARK 470 ASP A 111 CG OD1 OD2 REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 341 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 403 DISTANCE = 7.07 ANGSTROMS REMARK 525 HOH A 419 DISTANCE = 6.83 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 205 REMARK 610 P6G A 206 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 0 O REMARK 620 2 ASN A 30 OD1 84.4 REMARK 620 3 ASN A 31 OD1 70.9 119.5 REMARK 620 4 ALA A 88 O 139.5 86.6 79.7 REMARK 620 5 HOH A 225 O 95.6 163.1 76.1 103.8 REMARK 620 6 HOH A 356 O 138.3 87.4 145.1 80.3 81.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD1 REMARK 620 2 ASP A 41 OD1 15.9 REMARK 620 3 GLU A 43 OE1 76.2 91.8 REMARK 620 4 GLU A 76 OE1 78.7 81.0 69.2 REMARK 620 5 GLU A 76 OE1 78.1 80.5 68.8 0.7 REMARK 620 6 GLU A 76 OE2 75.7 78.4 67.5 3.2 2.5 REMARK 620 7 HOH A 332 O 168.4 167.5 98.4 109.4 109.9 112.1 REMARK 620 8 HOH A 395 O 92.2 77.7 163.3 120.9 121.2 121.8 90.6 REMARK 620 9 HOH A 443 O 73.8 76.5 90.4 149.0 148.3 145.8 96.2 74.6 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P6G A 206 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 396203 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (28-131) WAS EXPRESSED WITH THE PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 3KKF A 28 131 UNP Q8A7Y0 Q8A7Y0_BACTN 28 131 SEQADV 3KKF GLY A 0 UNP Q8A7Y0 EXPRESSION TAG SEQRES 1 A 105 GLY ALA GLU ASN ASN MSE VAL ARG LEU SER ARG ILE ILE SEQRES 2 A 105 ILE ASP PRO GLU ARG LEU GLU GLU TYR ASN ALA TYR LEU SEQRES 3 A 105 LYS GLU GLU ILE GLU VAL SER MSE ARG LEU GLU PRO GLY SEQRES 4 A 105 VAL LEU VAL LEU TYR ALA VAL ALA GLU LYS GLU ARG PRO SEQRES 5 A 105 ASN HIS VAL THR ILE LEU GLU ILE TYR ALA ASP GLU ALA SEQRES 6 A 105 ALA TYR LYS SER HIS ILE ALA THR PRO HIS PHE LYS LYS SEQRES 7 A 105 TYR LYS GLU GLY THR LEU ASP MSE VAL GLN MSE LEU GLU SEQRES 8 A 105 LEU ILE ASP ALA THR PRO LEU ILE PRO GLY LEU LYS MSE SEQRES 9 A 105 LYS MODRES 3KKF MSE A 32 MET SELENOMETHIONINE MODRES 3KKF MSE A 60 MET SELENOMETHIONINE MODRES 3KKF MSE A 112 MET SELENOMETHIONINE MODRES 3KKF MSE A 115 MET SELENOMETHIONINE MODRES 3KKF MSE A 130 MET SELENOMETHIONINE HET MSE A 32 8 HET MSE A 60 8 HET MSE A 112 8 HET MSE A 115 23 HET MSE A 130 13 HET CA A 201 1 HET CA A 202 1 HET ACT A 203 4 HET EDO A 204 4 HET P6G A 205 18 HET P6G A 206 26 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM P6G HEXAETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 EDO C2 H6 O2 FORMUL 6 P6G 2(C12 H26 O7) FORMUL 8 HOH *139(H2 O) HELIX 1 1 GLY A 0 ASN A 31 5 5 HELIX 2 2 ARG A 44 GLU A 63 1 20 HELIX 3 3 ASP A 89 ALA A 98 1 10 HELIX 4 4 THR A 99 LEU A 110 1 12 SHEET 1 A 4 VAL A 66 ALA A 73 0 SHEET 2 A 4 HIS A 80 TYR A 87 -1 O LEU A 84 N TYR A 70 SHEET 3 A 4 MSE A 32 ILE A 40 -1 N ILE A 38 O VAL A 81 SHEET 4 A 4 VAL A 113 ALA A 121 -1 O ILE A 119 N LEU A 35 LINK C ASN A 31 N MSE A 32 1555 1555 1.31 LINK C MSE A 32 N VAL A 33 1555 1555 1.32 LINK C SER A 59 N MSE A 60 1555 1555 1.34 LINK C MSE A 60 N ARG A 61 1555 1555 1.33 LINK C ASP A 111 N MSE A 112 1555 1555 1.34 LINK C MSE A 112 N VAL A 113 1555 1555 1.32 LINK C GLN A 114 N MSE A 115 1555 1555 1.34 LINK C MSE A 115 N LEU A 116 1555 1555 1.34 LINK C LYS A 129 N MSE A 130 1555 1555 1.33 LINK C MSE A 130 N LYS A 131 1555 1555 1.32 LINK O GLY A 0 CA CA A 202 1555 1555 2.40 LINK OD1 ASN A 30 CA CA A 202 1555 1555 2.29 LINK OD1 ASN A 31 CA CA A 202 1555 1555 2.40 LINK OD1AASP A 41 CA CA A 201 1555 1555 2.47 LINK OD1BASP A 41 CA CA A 201 1555 1555 2.27 LINK OE1 GLU A 43 CA CA A 201 1555 1555 2.07 LINK OE1AGLU A 76 CA CA A 201 1555 3655 3.02 LINK OE1BGLU A 76 CA CA A 201 1555 3655 2.45 LINK OE2AGLU A 76 CA CA A 201 1555 3655 2.03 LINK O ALA A 88 CA CA A 202 1555 1555 2.33 LINK CA CA A 201 O HOH A 332 1555 1555 2.28 LINK CA CA A 201 O BHOH A 395 1555 2545 2.57 LINK CA CA A 201 O HOH A 443 1555 1555 2.43 LINK CA CA A 202 O HOH A 225 1555 1555 2.38 LINK CA CA A 202 O HOH A 356 1555 1555 2.38 SITE 1 AC1 6 ASP A 41 GLU A 43 GLU A 76 HOH A 332 SITE 2 AC1 6 HOH A 395 HOH A 443 SITE 1 AC2 6 GLY A 0 ASN A 30 ASN A 31 ALA A 88 SITE 2 AC2 6 HOH A 225 HOH A 356 SITE 1 AC3 6 LEU A 52 GLU A 55 HIS A 96 PHE A 102 SITE 2 AC3 6 HOH A 379 HOH A 397 SITE 1 AC4 6 ALA A 28 GLU A 29 ASN A 31 PRO A 123 SITE 2 AC4 6 HOH A 352 HOH A 360 SITE 1 AC5 4 ALA A 50 GLU A 54 LYS A 104 HOH A 362 SITE 1 AC6 12 ILE A 38 TYR A 93 ILE A 97 PHE A 102 SITE 2 AC6 12 TYR A 105 LYS A 106 LEU A 110 LEU A 116 SITE 3 AC6 12 HOH A 343 HOH A 380 HOH A 382 HOH A 397 CRYST1 70.740 70.740 96.021 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014136 0.008162 0.000000 0.00000 SCALE2 0.000000 0.016323 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010414 0.00000