HEADER SIGNALING PROTEIN 06-NOV-09 3KKO TITLE CRYSTAL STRUCTURE OF M-RAS P40D/D41E/L51R IN COMPLEX WITH GPPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN M-RAS; COMPND 3 CHAIN: A, B, P; COMPND 4 FRAGMENT: G DOMAIN, UNP RESIDUES 1-178; COMPND 5 SYNONYM: RAS-RELATED PROTEIN R-RAS3, MUSCLE AND MICROSPIKES RAS, X- COMPND 6 RAS; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX-6P-1 KEYWDS GTP-BINDING, GTPASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.MURAOKA,F.SHIMA,J.LIAO,Y.IJIRI,K.MATSUMOTO,M.YE,T.INOUE,T.KATAOKA REVDAT 3 01-NOV-23 3KKO 1 REMARK SEQADV LINK REVDAT 2 12-FEB-14 3KKO 1 JRNL VERSN REVDAT 1 16-JUN-10 3KKO 0 JRNL AUTH F.SHIMA,Y.IJIRI,S.MURAOKA,J.LIAO,M.YE,M.ARAKI,K.MATSUMOTO, JRNL AUTH 2 N.YAMAMOTO,T.SUGIMOTO,Y.YOSHIKAWA,T.KUMASAKA,M.YAMAMOTO, JRNL AUTH 3 A.TAMURA,T.KATAOKA JRNL TITL STRUCTURAL BASIS FOR CONFORMATIONAL DYNAMICS OF GTP-BOUND JRNL TITL 2 RAS PROTEIN JRNL REF J.BIOL.CHEM. V. 285 22696 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20479006 JRNL DOI 10.1074/JBC.M110.125161 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 49403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2649 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2250 REMARK 3 BIN FREE R VALUE SET COUNT : 176 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4138 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 114 REMARK 3 SOLVENT ATOMS : 415 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.937 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4512 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6146 ; 1.198 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 5.395 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 228 ;39.877 ;24.079 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 801 ;12.996 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;19.483 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 663 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3428 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2120 ; 0.188 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3056 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 397 ; 0.135 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.039 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 76 ; 0.208 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 38 ; 0.166 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2718 ; 0.732 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4290 ; 1.157 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2069 ; 1.677 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1856 ; 2.679 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KKO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056111. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU JUPITER 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52129 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 3.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28200 REMARK 200 R SYM FOR SHELL (I) : 0.28200 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1X1S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE, PEG REMARK 280 -4000, GLYCEROL, PH 5.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.09800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.61750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 96.12400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 21.61750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.09800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 96.12400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 PRO A 7 REMARK 465 SER A 8 REMARK 465 GLU A 9 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 PRO B 7 REMARK 465 SER B 8 REMARK 465 GLU B 9 REMARK 465 GLY P -4 REMARK 465 PRO P -3 REMARK 465 LEU P -2 REMARK 465 GLY P -1 REMARK 465 SER P 0 REMARK 465 MET P 1 REMARK 465 ALA P 2 REMARK 465 THR P 3 REMARK 465 SER P 4 REMARK 465 ALA P 5 REMARK 465 VAL P 6 REMARK 465 PRO P 7 REMARK 465 SER P 8 REMARK 465 GLU P 9 REMARK 465 ASN P 10 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 104 OH TYR A 148 2.09 REMARK 500 OD1 ASP B 104 OH TYR B 148 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE B 46 -61.09 -95.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 180 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 27 OG REMARK 620 2 THR A 45 OG1 84.8 REMARK 620 3 GNP A 179 O2G 171.1 86.3 REMARK 620 4 GNP A 179 O2B 92.7 177.4 96.2 REMARK 620 5 HOH A1001 O 90.0 90.2 90.6 89.9 REMARK 620 6 HOH A1002 O 89.4 90.9 90.1 88.9 178.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 180 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 27 OG REMARK 620 2 THR B 45 OG1 82.9 REMARK 620 3 GNP B 179 O2G 169.4 87.8 REMARK 620 4 GNP B 179 O2B 93.8 172.3 94.7 REMARK 620 5 HOH B1001 O 89.6 92.2 96.0 94.7 REMARK 620 6 HOH B1002 O 87.7 86.6 86.5 86.3 177.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG P 180 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER P 27 OG REMARK 620 2 THR P 45 OG1 79.2 REMARK 620 3 GNP P 179 O2G 168.1 89.1 REMARK 620 4 GNP P 179 O2B 90.8 169.8 100.8 REMARK 620 5 HOH P1001 O 85.8 87.3 91.6 90.0 REMARK 620 6 HOH P1002 O 88.2 91.4 94.3 90.2 174.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP B 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 181 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP P 179 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG P 180 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 P 181 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1X1S RELATED DB: PDB REMARK 900 RELATED ID: 1X1R RELATED DB: PDB REMARK 900 RELATED ID: 3KKM RELATED DB: PDB REMARK 900 RELATED ID: 3KKN RELATED DB: PDB REMARK 900 RELATED ID: 3KKP RELATED DB: PDB REMARK 900 RELATED ID: 3KKQ RELATED DB: PDB DBREF 3KKO A 1 178 UNP O08989 RASM_MOUSE 1 178 DBREF 3KKO B 1 178 UNP O08989 RASM_MOUSE 1 178 DBREF 3KKO P 1 178 UNP O08989 RASM_MOUSE 1 178 SEQADV 3KKO GLY A -4 UNP O08989 EXPRESSION TAG SEQADV 3KKO PRO A -3 UNP O08989 EXPRESSION TAG SEQADV 3KKO LEU A -2 UNP O08989 EXPRESSION TAG SEQADV 3KKO GLY A -1 UNP O08989 EXPRESSION TAG SEQADV 3KKO SER A 0 UNP O08989 EXPRESSION TAG SEQADV 3KKO ASP A 40 UNP O08989 PRO 40 ENGINEERED MUTATION SEQADV 3KKO GLU A 41 UNP O08989 ASP 41 ENGINEERED MUTATION SEQADV 3KKO ARG A 51 UNP O08989 LEU 51 ENGINEERED MUTATION SEQADV 3KKO GLY B -4 UNP O08989 EXPRESSION TAG SEQADV 3KKO PRO B -3 UNP O08989 EXPRESSION TAG SEQADV 3KKO LEU B -2 UNP O08989 EXPRESSION TAG SEQADV 3KKO GLY B -1 UNP O08989 EXPRESSION TAG SEQADV 3KKO SER B 0 UNP O08989 EXPRESSION TAG SEQADV 3KKO ASP B 40 UNP O08989 PRO 40 ENGINEERED MUTATION SEQADV 3KKO GLU B 41 UNP O08989 ASP 41 ENGINEERED MUTATION SEQADV 3KKO ARG B 51 UNP O08989 LEU 51 ENGINEERED MUTATION SEQADV 3KKO GLY P -4 UNP O08989 EXPRESSION TAG SEQADV 3KKO PRO P -3 UNP O08989 EXPRESSION TAG SEQADV 3KKO LEU P -2 UNP O08989 EXPRESSION TAG SEQADV 3KKO GLY P -1 UNP O08989 EXPRESSION TAG SEQADV 3KKO SER P 0 UNP O08989 EXPRESSION TAG SEQADV 3KKO ASP P 40 UNP O08989 PRO 40 ENGINEERED MUTATION SEQADV 3KKO GLU P 41 UNP O08989 ASP 41 ENGINEERED MUTATION SEQADV 3KKO ARG P 51 UNP O08989 LEU 51 ENGINEERED MUTATION SEQRES 1 A 183 GLY PRO LEU GLY SER MET ALA THR SER ALA VAL PRO SER SEQRES 2 A 183 GLU ASN LEU PRO THR TYR LYS LEU VAL VAL VAL GLY ASP SEQRES 3 A 183 GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN PHE PHE SEQRES 4 A 183 GLN LYS ILE PHE VAL ASP GLU TYR ASP PRO THR ILE GLU SEQRES 5 A 183 ASP SER TYR ARG LYS HIS THR GLU ILE ASP ASN GLN TRP SEQRES 6 A 183 ALA ILE LEU ASP VAL LEU ASP THR ALA GLY GLN GLU GLU SEQRES 7 A 183 PHE SER ALA MET ARG GLU GLN TYR MET ARG THR GLY ASP SEQRES 8 A 183 GLY PHE LEU ILE VAL TYR SER VAL THR ASP LYS ALA SER SEQRES 9 A 183 PHE GLU HIS VAL ASP ARG PHE HIS GLN LEU ILE LEU ARG SEQRES 10 A 183 VAL LYS ASP ARG GLU SER PHE PRO MET ILE LEU VAL ALA SEQRES 11 A 183 ASN LYS VAL ASP LEU MET HIS LEU ARG LYS VAL THR ARG SEQRES 12 A 183 ASP GLN GLY LYS GLU MET ALA THR LYS TYR ASN ILE PRO SEQRES 13 A 183 TYR ILE GLU THR SER ALA LYS ASP PRO PRO LEU ASN VAL SEQRES 14 A 183 ASP LYS THR PHE HIS ASP LEU VAL ARG VAL ILE ARG GLN SEQRES 15 A 183 GLN SEQRES 1 B 183 GLY PRO LEU GLY SER MET ALA THR SER ALA VAL PRO SER SEQRES 2 B 183 GLU ASN LEU PRO THR TYR LYS LEU VAL VAL VAL GLY ASP SEQRES 3 B 183 GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN PHE PHE SEQRES 4 B 183 GLN LYS ILE PHE VAL ASP GLU TYR ASP PRO THR ILE GLU SEQRES 5 B 183 ASP SER TYR ARG LYS HIS THR GLU ILE ASP ASN GLN TRP SEQRES 6 B 183 ALA ILE LEU ASP VAL LEU ASP THR ALA GLY GLN GLU GLU SEQRES 7 B 183 PHE SER ALA MET ARG GLU GLN TYR MET ARG THR GLY ASP SEQRES 8 B 183 GLY PHE LEU ILE VAL TYR SER VAL THR ASP LYS ALA SER SEQRES 9 B 183 PHE GLU HIS VAL ASP ARG PHE HIS GLN LEU ILE LEU ARG SEQRES 10 B 183 VAL LYS ASP ARG GLU SER PHE PRO MET ILE LEU VAL ALA SEQRES 11 B 183 ASN LYS VAL ASP LEU MET HIS LEU ARG LYS VAL THR ARG SEQRES 12 B 183 ASP GLN GLY LYS GLU MET ALA THR LYS TYR ASN ILE PRO SEQRES 13 B 183 TYR ILE GLU THR SER ALA LYS ASP PRO PRO LEU ASN VAL SEQRES 14 B 183 ASP LYS THR PHE HIS ASP LEU VAL ARG VAL ILE ARG GLN SEQRES 15 B 183 GLN SEQRES 1 P 183 GLY PRO LEU GLY SER MET ALA THR SER ALA VAL PRO SER SEQRES 2 P 183 GLU ASN LEU PRO THR TYR LYS LEU VAL VAL VAL GLY ASP SEQRES 3 P 183 GLY GLY VAL GLY LYS SER ALA LEU THR ILE GLN PHE PHE SEQRES 4 P 183 GLN LYS ILE PHE VAL ASP GLU TYR ASP PRO THR ILE GLU SEQRES 5 P 183 ASP SER TYR ARG LYS HIS THR GLU ILE ASP ASN GLN TRP SEQRES 6 P 183 ALA ILE LEU ASP VAL LEU ASP THR ALA GLY GLN GLU GLU SEQRES 7 P 183 PHE SER ALA MET ARG GLU GLN TYR MET ARG THR GLY ASP SEQRES 8 P 183 GLY PHE LEU ILE VAL TYR SER VAL THR ASP LYS ALA SER SEQRES 9 P 183 PHE GLU HIS VAL ASP ARG PHE HIS GLN LEU ILE LEU ARG SEQRES 10 P 183 VAL LYS ASP ARG GLU SER PHE PRO MET ILE LEU VAL ALA SEQRES 11 P 183 ASN LYS VAL ASP LEU MET HIS LEU ARG LYS VAL THR ARG SEQRES 12 P 183 ASP GLN GLY LYS GLU MET ALA THR LYS TYR ASN ILE PRO SEQRES 13 P 183 TYR ILE GLU THR SER ALA LYS ASP PRO PRO LEU ASN VAL SEQRES 14 P 183 ASP LYS THR PHE HIS ASP LEU VAL ARG VAL ILE ARG GLN SEQRES 15 P 183 GLN HET GNP A 179 32 HET MG A 180 1 HET SO4 A 181 5 HET GNP B 179 32 HET MG B 180 1 HET SO4 B 181 5 HET GNP P 179 32 HET MG P 180 1 HET SO4 P 181 5 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION FORMUL 4 GNP 3(C10 H17 N6 O13 P3) FORMUL 5 MG 3(MG 2+) FORMUL 6 SO4 3(O4 S 2-) FORMUL 13 HOH *415(H2 O) HELIX 1 1 GLY A 25 LYS A 36 1 12 HELIX 2 2 GLN A 71 GLU A 73 5 3 HELIX 3 3 PHE A 74 THR A 84 1 11 HELIX 4 4 ASP A 96 HIS A 102 1 7 HELIX 5 5 HIS A 102 ASP A 115 1 14 HELIX 6 6 THR A 137 TYR A 148 1 12 HELIX 7 7 ASN A 163 ARG A 176 1 14 HELIX 8 8 GLY B 25 LYS B 36 1 12 HELIX 9 9 GLN B 71 GLU B 73 5 3 HELIX 10 10 PHE B 74 ARG B 83 1 10 HELIX 11 11 ASP B 96 HIS B 102 1 7 HELIX 12 12 HIS B 102 ASP B 115 1 14 HELIX 13 13 LEU B 130 ARG B 134 5 5 HELIX 14 14 THR B 137 ASN B 149 1 13 HELIX 15 15 ASN B 163 GLN B 177 1 15 HELIX 16 16 GLY P 25 LYS P 36 1 12 HELIX 17 17 GLN P 71 GLU P 73 5 3 HELIX 18 18 PHE P 74 ARG P 83 1 10 HELIX 19 19 ASP P 96 HIS P 102 1 7 HELIX 20 20 HIS P 102 ASP P 115 1 14 HELIX 21 21 LEU P 130 ARG P 134 5 5 HELIX 22 22 THR P 137 TYR P 148 1 12 HELIX 23 23 ASN P 163 GLN P 178 1 16 SHEET 1 A 6 GLU A 47 ILE A 56 0 SHEET 2 A 6 GLN A 59 THR A 68 -1 O LEU A 63 N LYS A 52 SHEET 3 A 6 THR A 13 VAL A 19 1 N VAL A 18 O LEU A 66 SHEET 4 A 6 GLY A 87 SER A 93 1 O VAL A 91 N VAL A 19 SHEET 5 A 6 MET A 121 ASN A 126 1 O VAL A 124 N ILE A 90 SHEET 6 A 6 TYR A 152 GLU A 154 1 O ILE A 153 N ALA A 125 SHEET 1 B 6 GLU B 47 ILE B 56 0 SHEET 2 B 6 GLN B 59 THR B 68 -1 O ASP B 67 N ASP B 48 SHEET 3 B 6 THR B 13 VAL B 19 1 N LEU B 16 O LEU B 66 SHEET 4 B 6 GLY B 87 SER B 93 1 O LEU B 89 N VAL B 19 SHEET 5 B 6 MET B 121 ASN B 126 1 O VAL B 124 N ILE B 90 SHEET 6 B 6 TYR B 152 GLU B 154 1 O ILE B 153 N ALA B 125 SHEET 1 C 6 GLU P 47 ILE P 56 0 SHEET 2 C 6 GLN P 59 THR P 68 -1 O VAL P 65 N TYR P 50 SHEET 3 C 6 THR P 13 VAL P 19 1 N VAL P 18 O LEU P 66 SHEET 4 C 6 GLY P 87 SER P 93 1 O VAL P 91 N VAL P 19 SHEET 5 C 6 MET P 121 ASN P 126 1 O ASN P 126 N TYR P 92 SHEET 6 C 6 TYR P 152 GLU P 154 1 O ILE P 153 N ALA P 125 LINK OG SER A 27 MG MG A 180 1555 1555 2.06 LINK OG1 THR A 45 MG MG A 180 1555 1555 2.06 LINK O2G GNP A 179 MG MG A 180 1555 1555 1.96 LINK O2B GNP A 179 MG MG A 180 1555 1555 2.04 LINK MG MG A 180 O HOH A1001 1555 1555 2.15 LINK MG MG A 180 O HOH A1002 1555 1555 2.09 LINK OG SER B 27 MG MG B 180 1555 1555 2.06 LINK OG1 THR B 45 MG MG B 180 1555 1555 2.15 LINK O2G GNP B 179 MG MG B 180 1555 1555 1.98 LINK O2B GNP B 179 MG MG B 180 1555 1555 2.10 LINK MG MG B 180 O HOH B1001 1555 1555 2.13 LINK MG MG B 180 O HOH B1002 1555 1555 2.11 LINK OG SER P 27 MG MG P 180 1555 1555 2.17 LINK OG1 THR P 45 MG MG P 180 1555 1555 2.18 LINK O2G GNP P 179 MG MG P 180 1555 1555 1.93 LINK O2B GNP P 179 MG MG P 180 1555 1555 2.03 LINK MG MG P 180 O HOH P1001 1555 1555 2.16 LINK MG MG P 180 O HOH P1002 1555 1555 2.06 CISPEP 1 ASP A 159 PRO A 160 0 -7.08 CISPEP 2 ASP B 159 PRO B 160 0 -4.76 CISPEP 3 ASP P 159 PRO P 160 0 -5.83 SITE 1 AC1 30 GLY A 22 GLY A 23 VAL A 24 GLY A 25 SITE 2 AC1 30 LYS A 26 SER A 27 ALA A 28 PHE A 38 SITE 3 AC1 30 VAL A 39 ASP A 40 GLU A 41 TYR A 42 SITE 4 AC1 30 PRO A 44 THR A 45 GLY A 70 ASN A 126 SITE 5 AC1 30 LYS A 127 ASP A 129 LEU A 130 SER A 156 SITE 6 AC1 30 ALA A 157 MG A 180 HOH A1001 HOH A1002 SITE 7 AC1 30 HOH A1003 HOH A1004 HOH A1005 HOH A1053 SITE 8 AC1 30 HOH A1109 HOH A1127 SITE 1 AC2 5 SER A 27 THR A 45 GNP A 179 HOH A1001 SITE 2 AC2 5 HOH A1002 SITE 1 AC3 5 LYS A 166 HIS A 169 ARG A 173 HOH A1113 SITE 2 AC3 5 HOH A1150 SITE 1 AC4 29 HOH A1066 GLY B 22 GLY B 23 VAL B 24 SITE 2 AC4 29 GLY B 25 LYS B 26 SER B 27 ALA B 28 SITE 3 AC4 29 PHE B 38 VAL B 39 ASP B 40 GLU B 41 SITE 4 AC4 29 PRO B 44 THR B 45 GLY B 70 ASN B 126 SITE 5 AC4 29 LYS B 127 ASP B 129 LEU B 130 SER B 156 SITE 6 AC4 29 ALA B 157 LYS B 158 MG B 180 HOH B1001 SITE 7 AC4 29 HOH B1002 HOH B1003 HOH B1004 HOH B1009 SITE 8 AC4 29 HOH B1035 SITE 1 AC5 5 SER B 27 THR B 45 GNP B 179 HOH B1001 SITE 2 AC5 5 HOH B1002 SITE 1 AC6 3 LYS B 166 HIS B 169 ARG B 173 SITE 1 AC7 27 GLY P 22 GLY P 23 VAL P 24 GLY P 25 SITE 2 AC7 27 LYS P 26 SER P 27 ALA P 28 PHE P 38 SITE 3 AC7 27 VAL P 39 ASP P 40 GLU P 41 TYR P 42 SITE 4 AC7 27 THR P 45 GLY P 70 ASN P 126 LYS P 127 SITE 5 AC7 27 ASP P 129 LEU P 130 SER P 156 ALA P 157 SITE 6 AC7 27 MG P 180 HOH P1001 HOH P1002 HOH P1003 SITE 7 AC7 27 HOH P1004 HOH P1018 HOH P1026 SITE 1 AC8 5 SER P 27 THR P 45 GNP P 179 HOH P1001 SITE 2 AC8 5 HOH P1002 SITE 1 AC9 4 LYS P 166 HIS P 169 ARG P 173 HOH P1114 CRYST1 78.196 192.248 43.235 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012788 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023129 0.00000