HEADER OXIDOREDUCTASE 08-NOV-09 3KLJ TITLE CRYSTAL STRUCTURE OF NADH:RUBREDOXIN OXIDOREDUCTASE FROM CLOSTRIDIUM TITLE 2 ACETOBUTYLICUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(FAD)-DEPENDENT DEHYDROGENASE, NIRB-FAMILY (N-TERMINAL COMPND 3 DOMAIN); COMPND 4 CHAIN: A; COMPND 5 SYNONYM: NADH-RUBREDOXIN OXIDOREDUCTASE; COMPND 6 EC: 1.18.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM ACETOBUTYLICUM; SOURCE 3 ORGANISM_TAXID: 1488; SOURCE 4 GENE: NROR, CA_C2448; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET7BLUE, PNROR KEYWDS FAD-BINDING PROTEIN, GR-FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.NISHIKAWA,Y.SHOMURA,S.KAWASAKI,Y.NIIMURA,Y.HIGUCHI REVDAT 2 13-JUL-11 3KLJ 1 VERSN REVDAT 1 16-FEB-10 3KLJ 0 JRNL AUTH K.NISHIKAWA,Y.SHOMURA,S.KAWASAKI,Y.NIIMURA,Y.HIGUCHI JRNL TITL CRYSTAL STRUCTURE OF NADH:RUBREDOXIN OXIDOREDUCTASE FROM JRNL TITL 2 CLOSTRIDIUM ACETOBUTYLICUM: A KEY COMPONENT OF THE DIOXYGEN JRNL TITL 3 SCAVENGING SYSTEM IN OBLIGATORY ANAEROBES. JRNL REF PROTEINS V. 78 1066 2010 JRNL REFN ISSN 0887-3585 JRNL PMID 20017214 JRNL DOI 10.1002/PROT.22650 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24627 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1319 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1785 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.2640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 168 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 38.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.238 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.163 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.663 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3095 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4212 ; 1.196 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 414 ; 6.453 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;39.303 ;26.480 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 593 ;17.859 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;18.859 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 486 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2266 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1930 ; 0.460 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3136 ; 0.853 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1165 ; 1.323 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1057 ; 2.114 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 41 REMARK 3 RESIDUE RANGE : A 224 A 296 REMARK 3 RESIDUE RANGE : A 59 A 109 REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2750 -24.6230 -13.2180 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.2821 REMARK 3 T33: 0.1441 T12: -0.0330 REMARK 3 T13: 0.0226 T23: 0.1088 REMARK 3 L TENSOR REMARK 3 L11: 4.7280 L22: 1.6121 REMARK 3 L33: 2.5758 L12: -0.1177 REMARK 3 L13: 0.0533 L23: -0.1782 REMARK 3 S TENSOR REMARK 3 S11: -0.0658 S12: 0.7391 S13: 0.4881 REMARK 3 S21: -0.1166 S22: 0.0174 S23: -0.2061 REMARK 3 S31: 0.0231 S32: -0.1791 S33: 0.0483 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 58 REMARK 3 RESIDUE RANGE : A 110 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): -27.8770 -47.0630 -4.5900 REMARK 3 T TENSOR REMARK 3 T11: 0.5902 T22: 0.5986 REMARK 3 T33: 0.1640 T12: -0.4534 REMARK 3 T13: 0.1588 T23: -0.1588 REMARK 3 L TENSOR REMARK 3 L11: 1.2758 L22: 2.7107 REMARK 3 L33: 5.9236 L12: -0.5250 REMARK 3 L13: -1.2667 L23: -1.2343 REMARK 3 S TENSOR REMARK 3 S11: -0.5758 S12: 0.6363 S13: -0.3177 REMARK 3 S21: 0.0159 S22: 0.0846 S23: 0.0357 REMARK 3 S31: 1.6194 S32: -1.3673 S33: 0.4913 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 297 A 379 REMARK 3 ORIGIN FOR THE GROUP (A): -20.1230 -36.2030 20.1460 REMARK 3 T TENSOR REMARK 3 T11: 0.4016 T22: 0.0434 REMARK 3 T33: 0.1912 T12: 0.0086 REMARK 3 T13: -0.0182 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.7892 L22: 8.8123 REMARK 3 L33: 11.3427 L12: -0.3324 REMARK 3 L13: -1.0165 L23: 7.6776 REMARK 3 S TENSOR REMARK 3 S11: 0.1342 S12: 0.0879 S13: 0.1549 REMARK 3 S21: -0.1043 S22: 0.2790 S23: -0.9320 REMARK 3 S31: 0.0809 S32: 0.2518 S33: -0.4131 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KLJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB056142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25983 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% (V/V) PEG 400, 0.1M TRIS-HCL PH REMARK 280 8.5, 0.15M MAGNESIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.13350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.20025 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.06675 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 44.13350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 22.06675 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 66.20025 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 11 63.22 -119.10 REMARK 500 HIS A 117 -11.02 84.37 REMARK 500 LEU A 227 20.61 -143.38 REMARK 500 LYS A 238 -93.79 -122.87 REMARK 500 ASP A 289 49.41 -78.80 REMARK 500 SER A 298 104.74 -162.03 REMARK 500 SER A 304 24.25 44.89 REMARK 500 GLU A 338 -113.88 70.42 REMARK 500 ASP A 349 81.74 -153.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE A 295 ILE A 296 -126.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ILE A 296 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 DBREF 3KLJ A 2 379 UNP Q9AL95 Q9AL95_CLOAB 2 379 SEQADV 3KLJ MET A -5 UNP Q9AL95 EXPRESSION TAG SEQADV 3KLJ HIS A -4 UNP Q9AL95 EXPRESSION TAG SEQADV 3KLJ HIS A -3 UNP Q9AL95 EXPRESSION TAG SEQADV 3KLJ HIS A -2 UNP Q9AL95 EXPRESSION TAG SEQADV 3KLJ HIS A -1 UNP Q9AL95 EXPRESSION TAG SEQADV 3KLJ HIS A 0 UNP Q9AL95 EXPRESSION TAG SEQADV 3KLJ HIS A 1 UNP Q9AL95 EXPRESSION TAG SEQRES 1 A 385 MET HIS HIS HIS HIS HIS HIS LYS SER THR LYS ILE LEU SEQRES 2 A 385 ILE LEU GLY ALA GLY PRO ALA GLY PHE SER ALA ALA LYS SEQRES 3 A 385 ALA ALA LEU GLY LYS CYS ASP ASP ILE THR MET ILE ASN SEQRES 4 A 385 SER GLU LYS TYR LEU PRO TYR TYR ARG PRO ARG LEU ASN SEQRES 5 A 385 GLU ILE ILE ALA LYS ASN LYS SER ILE ASP ASP ILE LEU SEQRES 6 A 385 ILE LYS LYS ASN ASP TRP TYR GLU LYS ASN ASN ILE LYS SEQRES 7 A 385 VAL ILE THR SER GLU PHE ALA THR SER ILE ASP PRO ASN SEQRES 8 A 385 ASN LYS LEU VAL THR LEU LYS SER GLY GLU LYS ILE LYS SEQRES 9 A 385 TYR GLU LYS LEU ILE ILE ALA SER GLY SER ILE ALA ASN SEQRES 10 A 385 LYS ILE LYS VAL PRO HIS ALA ASP GLU ILE PHE SER LEU SEQRES 11 A 385 TYR SER TYR ASP ASP ALA LEU LYS ILE LYS ASP GLU CYS SEQRES 12 A 385 LYS ASN LYS GLY LYS ALA PHE ILE ILE GLY GLY GLY ILE SEQRES 13 A 385 LEU GLY ILE GLU LEU ALA GLN ALA ILE ILE ASP SER GLY SEQRES 14 A 385 THR PRO ALA SER ILE GLY ILE ILE LEU GLU TYR PRO LEU SEQRES 15 A 385 GLU ARG GLN LEU ASP ARG ASP GLY GLY LEU PHE LEU LYS SEQRES 16 A 385 ASP LYS LEU ASP ARG LEU GLY ILE LYS ILE TYR THR ASN SEQRES 17 A 385 SER ASN PHE GLU GLU MET GLY ASP LEU ILE ARG SER SER SEQRES 18 A 385 CYS VAL ILE THR ALA VAL GLY VAL LYS PRO ASN LEU ASP SEQRES 19 A 385 PHE ILE LYS ASP THR GLU ILE ALA SER LYS ARG GLY ILE SEQRES 20 A 385 LEU VAL ASN ASP HIS MET GLU THR SER ILE LYS ASP ILE SEQRES 21 A 385 TYR ALA CYS GLY ASP VAL ALA GLU PHE TYR GLY LYS ASN SEQRES 22 A 385 PRO GLY LEU ILE ASN ILE ALA ASN LYS GLN GLY GLU VAL SEQRES 23 A 385 ALA GLY LEU ASN ALA CYS GLY GLU ASP ALA SER TYR SER SEQRES 24 A 385 GLU ILE ILE PRO SER PRO ILE LEU LYS VAL SER GLY ILE SEQRES 25 A 385 SER ILE ILE SER CYS GLY ASP ILE GLU ASN ASN LYS PRO SEQRES 26 A 385 SER LYS VAL PHE ARG SER THR GLN GLU ASP LYS TYR ILE SEQRES 27 A 385 VAL CYS MET LEU LYS GLU ASN LYS ILE ASP ALA ALA ALA SEQRES 28 A 385 VAL ILE GLY ASP VAL SER LEU GLY THR LYS LEU LYS LYS SEQRES 29 A 385 ALA ILE ASP SER SER LYS SER PHE ASP ASN ILE SER SER SEQRES 30 A 385 LEU ASP ALA ILE LEU ASN ASN LEU HET FAD A 401 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *168(H2 O) HELIX 1 1 GLY A 12 LEU A 23 1 12 HELIX 2 2 TYR A 41 PRO A 43 5 3 HELIX 3 3 ARG A 44 LYS A 51 1 8 HELIX 4 4 SER A 54 ILE A 58 5 5 HELIX 5 5 LYS A 62 ASN A 69 1 8 HELIX 6 6 SER A 126 GLY A 141 1 16 HELIX 7 7 GLY A 149 GLY A 163 1 15 HELIX 8 8 ASP A 181 ARG A 194 1 14 HELIX 9 9 ASN A 204 GLU A 207 5 4 HELIX 10 10 MET A 208 SER A 215 1 8 HELIX 11 11 LEU A 227 LYS A 231 5 5 HELIX 12 12 LEU A 270 CYS A 286 1 17 HELIX 13 13 ASP A 349 SER A 362 1 14 HELIX 14 14 SER A 371 ASN A 377 1 7 SHEET 1 A 5 LYS A 72 ILE A 74 0 SHEET 2 A 5 ILE A 29 ILE A 32 1 N MET A 31 O LYS A 72 SHEET 3 A 5 ILE A 6 LEU A 9 1 N ILE A 8 O ILE A 32 SHEET 4 A 5 LYS A 101 ILE A 104 1 O ILE A 103 N LEU A 7 SHEET 5 A 5 ILE A 254 ALA A 256 1 O TYR A 255 N LEU A 102 SHEET 1 B 3 ALA A 79 ASP A 83 0 SHEET 2 B 3 LEU A 88 LEU A 91 -1 O THR A 90 N THR A 80 SHEET 3 B 3 LYS A 96 LYS A 98 -1 O ILE A 97 N VAL A 89 SHEET 1 C 2 SER A 108 ALA A 110 0 SHEET 2 C 2 VAL A 223 PRO A 225 -1 O LYS A 224 N ILE A 109 SHEET 1 D 5 ILE A 121 PHE A 122 0 SHEET 2 D 5 CYS A 216 THR A 219 1 O THR A 219 N PHE A 122 SHEET 3 D 5 ALA A 143 ILE A 146 1 N PHE A 144 O CYS A 216 SHEET 4 D 5 ALA A 166 GLY A 169 1 O GLY A 169 N ILE A 145 SHEET 5 D 5 LYS A 198 TYR A 200 1 O TYR A 200 N ILE A 168 SHEET 1 E 2 ILE A 241 VAL A 243 0 SHEET 2 E 2 ALA A 261 PHE A 263 1 O GLU A 262 N ILE A 241 SHEET 1 F 5 ILE A 300 VAL A 303 0 SHEET 2 F 5 ILE A 306 CYS A 311 -1 O ILE A 306 N VAL A 303 SHEET 3 F 5 LYS A 340 ILE A 347 -1 O ALA A 344 N CYS A 311 SHEET 4 F 5 TYR A 331 LYS A 337 -1 N MET A 335 O ALA A 343 SHEET 5 F 5 LYS A 321 THR A 326 -1 N LYS A 321 O LEU A 336 SSBOND 1 CYS A 26 CYS A 286 1555 1555 2.04 CISPEP 1 ILE A 300 LEU A 301 0 -25.43 SITE 1 AC1 32 LEU A 9 GLY A 10 GLY A 12 PRO A 13 SITE 2 AC1 32 ALA A 14 ASN A 33 SER A 34 GLU A 35 SITE 3 AC1 32 ARG A 42 PRO A 43 GLU A 77 PHE A 78 SITE 4 AC1 32 ALA A 79 ALA A 105 SER A 106 GLY A 107 SITE 5 AC1 32 SER A 108 TYR A 125 LEU A 151 ASN A 226 SITE 6 AC1 32 PHE A 229 GLY A 258 ASP A 259 GLY A 269 SITE 7 AC1 32 LEU A 270 ILE A 271 ALA A 274 LYS A 302 SITE 8 AC1 32 HOH A 380 HOH A 391 HOH A 400 HOH A 458 CRYST1 98.576 98.576 88.267 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010144 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011329 0.00000