HEADER TRANSFERASE 08-NOV-09 3KLK TITLE CRYSTAL STRUCTURE OF LACTOBACILLUS REUTERI N-TERMINALLY TRUNCATED TITLE 2 GLUCANSUCRASE GTF180 IN TRICLINIC APO- FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCANSUCRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINALLY TRUNCATED GTF180, UNP RESIDUES 742-1772; COMPND 5 EC: 2.4.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS REUTERI; SOURCE 3 ORGANISM_TAXID: 1598; SOURCE 4 STRAIN: 180; SOURCE 5 GENE: GTF180; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS NATIVE FORM, OPEN CONFORMATION, MULTIDOMAIN PROTEIN, KEYWDS 2 GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VUJICIC-ZAGAR,T.PIJNING,S.KRALJ,W.EEUWEMA,L.DIJKHUIZEN,B.W.DIJKSTRA REVDAT 4 20-MAR-24 3KLK 1 REMARK SEQADV LINK REVDAT 3 05-JAN-11 3KLK 1 JRNL REVDAT 2 22-DEC-10 3KLK 1 JRNL REVDAT 1 03-NOV-10 3KLK 0 JRNL AUTH A.VUJICIC-ZAGAR,T.PIJNING,S.KRALJ,C.A.LOPEZ,W.EEUWEMA, JRNL AUTH 2 L.DIJKHUIZEN,B.W.DIJKSTRA JRNL TITL CRYSTAL STRUCTURE OF A 117 KDA GLUCANSUCRASE FRAGMENT JRNL TITL 2 PROVIDES INSIGHT INTO EVOLUTION AND PRODUCT SPECIFICITY OF JRNL TITL 3 GH70 ENZYMES JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 21406 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 21118988 JRNL DOI 10.1073/PNAS.1007531107 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 133798 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9221 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 506 REMARK 3 BIN FREE R VALUE : 0.2950 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7977 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 1055 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : 0.10000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : -0.53000 REMARK 3 B13 (A**2) : 0.68000 REMARK 3 B23 (A**2) : -0.14000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.089 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.103 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8205 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11151 ; 1.558 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1009 ; 6.134 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 436 ;36.853 ;25.459 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1308 ;12.689 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;15.744 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1188 ; 0.120 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6426 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 4138 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5716 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 937 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 6 ; 0.076 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 59 ; 0.309 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 48 ; 0.347 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5111 ; 5.358 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 8029 ; 5.321 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3591 ; 7.556 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3120 ; 7.894 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 746 A 815 REMARK 3 ORIGIN FOR THE GROUP (A): 43.7180 92.1200 47.4240 REMARK 3 T TENSOR REMARK 3 T11: -0.0001 T22: 0.0000 REMARK 3 T33: 0.0001 T12: -0.0001 REMARK 3 T13: -0.0001 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3677 L22: 8.7122 REMARK 3 L33: 4.9608 L12: 1.5990 REMARK 3 L13: -1.1768 L23: -3.6668 REMARK 3 S TENSOR REMARK 3 S11: -0.1478 S12: 0.0325 S13: -0.0935 REMARK 3 S21: 0.2356 S22: 0.0327 S23: -0.4541 REMARK 3 S31: 0.1143 S32: 0.0635 S33: 0.1151 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 816 A 1640 REMARK 3 ORIGIN FOR THE GROUP (A): 16.1650 28.7510 75.6590 REMARK 3 T TENSOR REMARK 3 T11: -0.1011 T22: -0.1295 REMARK 3 T33: -0.1927 T12: -0.0197 REMARK 3 T13: 0.0154 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 0.6686 L22: 0.8368 REMARK 3 L33: 1.1128 L12: 0.5031 REMARK 3 L13: -0.5632 L23: -0.2673 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: 0.0661 S13: -0.0040 REMARK 3 S21: -0.0464 S22: 0.0343 S23: -0.0046 REMARK 3 S31: -0.1015 S32: -0.0339 S33: -0.0086 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1641 A 1751 REMARK 3 ORIGIN FOR THE GROUP (A): 44.7550 91.5490 34.3920 REMARK 3 T TENSOR REMARK 3 T11: 0.0606 T22: 0.0199 REMARK 3 T33: 0.0007 T12: -0.1401 REMARK 3 T13: 0.0904 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 1.0393 L22: 2.7902 REMARK 3 L33: 3.0074 L12: -1.7005 REMARK 3 L13: 0.9266 L23: -1.3846 REMARK 3 S TENSOR REMARK 3 S11: -0.0180 S12: -0.1131 S13: -0.1526 REMARK 3 S21: 0.0843 S22: 0.1216 S23: 0.2394 REMARK 3 S31: 0.1929 S32: -0.0960 S33: -0.1035 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056143. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-05; 17-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ESRF; ESRF REMARK 200 BEAMLINE : ID29; ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791; 0.97911, 0.97927, REMARK 200 0.97564 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; ADSC QUANTUM REMARK 200 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 133854 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 77.625 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.07700 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45300 REMARK 200 R SYM FOR SHELL (I) : 0.45300 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM POTASSIUM PHOSPHATE, REMARK 280 BIS-TRIS PROPANE-HCL BUFFER, PH 6.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 740 REMARK 465 GLY A 741 REMARK 465 ILE A 742 REMARK 465 ASN A 743 REMARK 465 GLY A 744 REMARK 465 GLN A 745 REMARK 465 SER A 1752 REMARK 465 PHE A 1753 REMARK 465 ASP A 1754 REMARK 465 SER A 1755 REMARK 465 SER A 1756 REMARK 465 ALA A 1757 REMARK 465 THR A 1758 REMARK 465 GLU A 1759 REMARK 465 ALA A 1760 REMARK 465 HIS A 1761 REMARK 465 PRO A 1762 REMARK 465 LEU A 1763 REMARK 465 LYS A 1764 REMARK 465 PRO A 1765 REMARK 465 GLY A 1766 REMARK 465 ASP A 1767 REMARK 465 LEU A 1768 REMARK 465 ASN A 1769 REMARK 465 GLY A 1770 REMARK 465 GLN A 1771 REMARK 465 LYS A 1772 REMARK 465 HIS A 1773 REMARK 465 HIS A 1774 REMARK 465 HIS A 1775 REMARK 465 HIS A 1776 REMARK 465 HIS A 1777 REMARK 465 HIS A 1778 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 753 3.49 -156.33 REMARK 500 LYS A 831 118.44 -35.36 REMARK 500 ASP A 838 122.26 -34.92 REMARK 500 THR A 881 -18.26 -44.75 REMARK 500 TRP A 960 -110.65 -112.64 REMARK 500 ASN A 969 42.64 -147.87 REMARK 500 ASN A 974 -159.43 -120.21 REMARK 500 LEU A 981 -62.65 -135.07 REMARK 500 ALA A 983 -137.49 56.68 REMARK 500 ALA A1139 -70.96 -133.95 REMARK 500 ALA A1393 -80.17 -83.47 REMARK 500 ALA A1682 44.78 -159.70 REMARK 500 ASN A1692 -61.11 -170.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 421 O REMARK 620 2 GLU A 979 O 166.2 REMARK 620 3 GLU A 979 OE2 88.6 91.9 REMARK 620 4 ASP A 985 OD1 84.6 84.9 132.0 REMARK 620 5 ASP A 985 OD2 82.3 84.3 77.9 54.2 REMARK 620 6 ASN A1029 O 108.3 85.3 78.1 148.6 153.4 REMARK 620 7 ASP A1508 OD1 78.2 108.3 145.9 78.3 129.9 76.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1779 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1780 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1781 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1782 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1783 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1784 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1785 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1786 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3HQ3 RELATED DB: PDB REMARK 900 RELATED ID: 3HZ3 RELATED DB: PDB REMARK 900 RELATED ID: 3KLL RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONFLICT F1674L MAY DUE TO PCR ERROR. DBREF 3KLK A 742 1772 UNP Q5SBN3 Q5SBN3_LACRE 742 1772 SEQADV 3KLK MET A 740 UNP Q5SBN3 EXPRESSION TAG SEQADV 3KLK GLY A 741 UNP Q5SBN3 EXPRESSION TAG SEQADV 3KLK LEU A 1674 UNP Q5SBN3 PHE 1674 SEE REMARK 999 SEQADV 3KLK HIS A 1773 UNP Q5SBN3 EXPRESSION TAG SEQADV 3KLK HIS A 1774 UNP Q5SBN3 EXPRESSION TAG SEQADV 3KLK HIS A 1775 UNP Q5SBN3 EXPRESSION TAG SEQADV 3KLK HIS A 1776 UNP Q5SBN3 EXPRESSION TAG SEQADV 3KLK HIS A 1777 UNP Q5SBN3 EXPRESSION TAG SEQADV 3KLK HIS A 1778 UNP Q5SBN3 EXPRESSION TAG SEQRES 1 A 1039 MET GLY ILE ASN GLY GLN GLN TYR TYR ILE ASP PRO THR SEQRES 2 A 1039 THR GLY GLN PRO ARG LYS ASN PHE LEU LEU GLN ASN GLY SEQRES 3 A 1039 ASN ASP TRP ILE TYR PHE ASP LYS ASP THR GLY ALA GLY SEQRES 4 A 1039 THR ASN ALA LEU LYS LEU GLN PHE ASP LYS GLY THR ILE SEQRES 5 A 1039 SER ALA ASP GLU GLN TYR ARG ARG GLY ASN GLU ALA TYR SEQRES 6 A 1039 SER TYR ASP ASP LYS SER ILE GLU ASN VAL ASN GLY TYR SEQRES 7 A 1039 LEU THR ALA ASP THR TRP TYR ARG PRO LYS GLN ILE LEU SEQRES 8 A 1039 LYS ASP GLY THR THR TRP THR ASP SER LYS GLU THR ASP SEQRES 9 A 1039 MET ARG PRO ILE LEU MET VAL TRP TRP PRO ASN THR VAL SEQRES 10 A 1039 THR GLN ALA TYR TYR LEU ASN TYR MET LYS GLN TYR GLY SEQRES 11 A 1039 ASN LEU LEU PRO ALA SER LEU PRO SER PHE SER THR ASP SEQRES 12 A 1039 ALA ASP SER ALA GLU LEU ASN HIS TYR SER GLU LEU VAL SEQRES 13 A 1039 GLN GLN ASN ILE GLU LYS ARG ILE SER GLU THR GLY SER SEQRES 14 A 1039 THR ASP TRP LEU ARG THR LEU MET HIS GLU PHE VAL THR SEQRES 15 A 1039 LYS ASN SER MET TRP ASN LYS ASP SER GLU ASN VAL ASP SEQRES 16 A 1039 TYR GLY GLY LEU GLN LEU GLN GLY GLY PHE LEU LYS TYR SEQRES 17 A 1039 VAL ASN SER ASP LEU THR LYS TYR ALA ASN SER ASP TRP SEQRES 18 A 1039 ARG LEU MET ASN ARG THR ALA THR ASN ILE ASP GLY LYS SEQRES 19 A 1039 ASN TYR GLY GLY ALA GLU PHE LEU LEU ALA ASN ASP ILE SEQRES 20 A 1039 ASP ASN SER ASN PRO VAL VAL GLN ALA GLU GLU LEU ASN SEQRES 21 A 1039 TRP LEU TYR TYR LEU MET ASN PHE GLY THR ILE THR GLY SEQRES 22 A 1039 ASN ASN PRO GLU ALA ASN PHE ASP GLY ILE ARG VAL ASP SEQRES 23 A 1039 ALA VAL ASP ASN VAL ASP VAL ASP LEU LEU SER ILE ALA SEQRES 24 A 1039 ARG ASP TYR PHE ASN ALA ALA TYR ASN MET GLU GLN SER SEQRES 25 A 1039 ASP ALA SER ALA ASN LYS HIS ILE ASN ILE LEU GLU ASP SEQRES 26 A 1039 TRP GLY TRP ASP ASP PRO ALA TYR VAL ASN LYS ILE GLY SEQRES 27 A 1039 ASN PRO GLN LEU THR MET ASP ASP ARG LEU ARG ASN ALA SEQRES 28 A 1039 ILE MET ASP THR LEU SER GLY ALA PRO ASP LYS ASN GLN SEQRES 29 A 1039 ALA LEU ASN LYS LEU ILE THR GLN SER LEU VAL ASN ARG SEQRES 30 A 1039 ALA ASN ASP ASN THR GLU ASN ALA VAL ILE PRO SER TYR SEQRES 31 A 1039 ASN PHE VAL ARG ALA HIS ASP SER ASN ALA GLN ASP GLN SEQRES 32 A 1039 ILE ARG GLN ALA ILE GLN ALA ALA THR GLY LYS PRO TYR SEQRES 33 A 1039 GLY GLU PHE ASN LEU ASP ASP GLU LYS LYS GLY MET GLU SEQRES 34 A 1039 ALA TYR ILE ASN ASP GLN ASN SER THR ASN LYS LYS TRP SEQRES 35 A 1039 ASN LEU TYR ASN MET PRO SER ALA TYR THR ILE LEU LEU SEQRES 36 A 1039 THR ASN LYS ASP SER VAL PRO ARG VAL TYR TYR GLY ASP SEQRES 37 A 1039 LEU TYR GLN ASP GLY GLY GLN TYR MET GLU HIS LYS THR SEQRES 38 A 1039 ARG TYR PHE ASP THR ILE THR ASN LEU LEU LYS THR ARG SEQRES 39 A 1039 VAL LYS TYR VAL ALA GLY GLY GLN THR MET SER VAL ASP SEQRES 40 A 1039 LYS ASN GLY ILE LEU THR ASN VAL ARG PHE GLY LYS GLY SEQRES 41 A 1039 ALA MET ASN ALA THR ASP THR GLY THR ASP GLU THR ARG SEQRES 42 A 1039 THR GLU GLY ILE GLY VAL VAL ILE SER ASN ASN THR ASN SEQRES 43 A 1039 LEU LYS LEU ASN ASP GLY GLU SER VAL VAL LEU HIS MET SEQRES 44 A 1039 GLY ALA ALA HIS LYS ASN GLN LYS TYR ARG ALA VAL ILE SEQRES 45 A 1039 LEU THR THR GLU ASP GLY VAL LYS ASN TYR THR ASN ASP SEQRES 46 A 1039 THR ASP ALA PRO VAL ALA TYR THR ASP ALA ASN GLY ASP SEQRES 47 A 1039 LEU HIS PHE THR ASN THR ASN LEU ASP GLY GLN GLN TYR SEQRES 48 A 1039 THR ALA VAL ARG GLY TYR ALA ASN PRO ASP VAL THR GLY SEQRES 49 A 1039 TYR LEU ALA VAL TRP VAL PRO ALA GLY ALA ALA ASP ASP SEQRES 50 A 1039 GLN ASP ALA ARG THR ALA PRO SER ASP GLU ALA HIS THR SEQRES 51 A 1039 THR LYS THR ALA TYR ARG SER ASN ALA ALA LEU ASP SER SEQRES 52 A 1039 ASN VAL ILE TYR GLU GLY PHE SER ASN PHE ILE TYR TRP SEQRES 53 A 1039 PRO THR THR GLU SER GLU ARG THR ASN VAL ARG ILE ALA SEQRES 54 A 1039 GLN ASN ALA ASP LEU PHE LYS SER TRP GLY ILE THR THR SEQRES 55 A 1039 PHE GLU LEU ALA PRO GLN TYR ASN SER SER LYS ASP GLY SEQRES 56 A 1039 THR PHE LEU ASP SER ILE ILE ASP ASN GLY TYR ALA PHE SEQRES 57 A 1039 THR ASP ARG TYR ASP LEU GLY MET SER THR PRO ASN LYS SEQRES 58 A 1039 TYR GLY SER ASP GLU ASP LEU ARG ASN ALA LEU GLN ALA SEQRES 59 A 1039 LEU HIS LYS ALA GLY LEU GLN ALA ILE ALA ASP TRP VAL SEQRES 60 A 1039 PRO ASP GLN ILE TYR ASN LEU PRO GLY LYS GLU ALA VAL SEQRES 61 A 1039 THR VAL THR ARG SER ASP ASP HIS GLY THR THR TRP GLU SEQRES 62 A 1039 VAL SER PRO ILE LYS ASN VAL VAL TYR ILE THR ASN THR SEQRES 63 A 1039 ILE GLY GLY GLY GLU TYR GLN LYS LYS TYR GLY GLY GLU SEQRES 64 A 1039 PHE LEU ASP THR LEU GLN LYS GLU TYR PRO GLN LEU PHE SEQRES 65 A 1039 SER GLN VAL TYR PRO VAL THR GLN THR THR ILE ASP PRO SEQRES 66 A 1039 SER VAL LYS ILE LYS GLU TRP SER ALA LYS TYR PHE ASN SEQRES 67 A 1039 GLY THR ASN ILE LEU HIS ARG GLY ALA GLY TYR VAL LEU SEQRES 68 A 1039 ARG SER ASN ASP GLY LYS TYR TYR ASN LEU GLY THR SER SEQRES 69 A 1039 THR GLN GLN PHE LEU PRO SER GLN LEU SER VAL GLN ASP SEQRES 70 A 1039 ASN GLU GLY TYR GLY PHE VAL LYS GLU GLY ASN ASN TYR SEQRES 71 A 1039 HIS TYR TYR ASP GLU ASN LYS GLN MET VAL LYS ASP ALA SEQRES 72 A 1039 PHE ILE GLN ASP SER VAL GLY ASN TRP TYR TYR LEU ASP SEQRES 73 A 1039 LYS ASN GLY ASN MET VAL ALA ASN GLN SER PRO VAL GLU SEQRES 74 A 1039 ILE SER SER ASN GLY ALA SER GLY THR TYR LEU PHE LEU SEQRES 75 A 1039 ASN ASN GLY THR SER PHE ARG SER GLY LEU VAL LYS THR SEQRES 76 A 1039 ASP ALA GLY THR TYR TYR TYR ASP GLY ASP GLY ARG MET SEQRES 77 A 1039 VAL ARG ASN GLN THR VAL SER ASP GLY ALA MET THR TYR SEQRES 78 A 1039 VAL LEU ASP GLU ASN GLY LYS LEU VAL SER GLU SER PHE SEQRES 79 A 1039 ASP SER SER ALA THR GLU ALA HIS PRO LEU LYS PRO GLY SEQRES 80 A 1039 ASP LEU ASN GLY GLN LYS HIS HIS HIS HIS HIS HIS HET CA A 1 1 HET GOL A1779 6 HET GOL A1780 6 HET GOL A1781 6 HET GOL A1782 6 HET GOL A1783 6 HET GOL A1784 6 HET GOL A1785 6 HET GOL A1786 6 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA CA 2+ FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 HOH *1055(H2 O) HELIX 1 1 LEU A 782 LEU A 784 5 3 HELIX 2 2 SER A 792 ASN A 801 1 10 HELIX 3 3 ASP A 832 THR A 834 5 3 HELIX 4 4 LEU A 848 VAL A 850 5 3 HELIX 5 5 ASN A 854 TYR A 868 1 15 HELIX 6 6 ASP A 884 GLY A 907 1 24 HELIX 7 7 THR A 909 THR A 921 1 13 HELIX 8 8 LYS A 922 GLU A 931 5 10 HELIX 9 9 SER A 950 ASN A 957 5 8 HELIX 10 10 ASN A 990 ASN A 1006 1 17 HELIX 11 11 ASN A 1006 ASN A 1013 1 8 HELIX 12 12 ALA A 1026 ASP A 1031 5 6 HELIX 13 13 VAL A 1032 ASN A 1047 1 16 HELIX 14 14 MET A 1048 GLN A 1050 5 3 HELIX 15 15 SER A 1051 ASN A 1056 1 6 HELIX 16 16 ASP A 1068 ILE A 1076 1 9 HELIX 17 17 ASP A 1084 LEU A 1095 1 12 HELIX 18 18 ASN A 1106 GLN A 1111 1 6 HELIX 19 19 ALA A 1139 GLY A 1152 1 14 HELIX 20 20 ASN A 1159 ASN A 1175 1 17 HELIX 21 21 ASN A 1185 ASN A 1196 1 12 HELIX 22 22 TYR A 1205 TYR A 1209 1 5 HELIX 23 23 TYR A 1222 VAL A 1237 1 16 HELIX 24 24 GLY A 1299 LYS A 1303 5 5 HELIX 25 25 ASN A 1397 SER A 1402 1 6 HELIX 26 26 THR A 1418 GLU A 1421 5 4 HELIX 27 27 ARG A 1422 ASN A 1430 1 9 HELIX 28 28 ASN A 1430 TRP A 1437 1 8 HELIX 29 29 PHE A 1456 ILE A 1460 5 5 HELIX 30 30 SER A 1483 ALA A 1497 1 15 HELIX 31 31 GLY A 1548 GLY A 1556 1 9 HELIX 32 32 PHE A 1559 TYR A 1567 1 9 HELIX 33 33 PRO A 1568 SER A 1572 5 5 HELIX 34 34 SER A 1592 LYS A 1594 5 3 SHEET 1 A 5 GLY A 778 ASN A 780 0 SHEET 2 A 5 ASP A 767 PHE A 771 -1 N TYR A 770 O THR A 779 SHEET 3 A 5 PHE A 760 ASN A 764 -1 N ASN A 764 O ASP A 767 SHEET 4 A 5 GLY A1710 THR A1714 1 O LYS A1713 N LEU A 761 SHEET 5 A 5 GLY A1717 TYR A1721 -1 O GLY A1717 N THR A1714 SHEET 1 B 2 TRP A 823 TYR A 824 0 SHEET 2 B 2 ARG A 845 PRO A 846 -1 O ARG A 845 N TYR A 824 SHEET 1 C 2 GLN A 828 LYS A 831 0 SHEET 2 C 2 THR A 835 ASP A 838 -1 N THR A 835 O LYS A 831 SHEET 1 D 6 GLN A1509 ILE A1510 0 SHEET 2 D 6 ASN A 984 ILE A 986 -1 N ASN A 984 O ILE A1510 SHEET 3 D 6 PHE A1596 ASN A1600 -1 O ASN A1597 N ASP A 985 SHEET 4 D 6 PHE A 944 TYR A 947 -1 N LEU A 945 O THR A1599 SHEET 5 D 6 GLY A1515 SER A1524 -1 O THR A1522 N LYS A 946 SHEET 6 D 6 VAL A1539 ILE A1546 -1 O THR A1543 N GLU A1517 SHEET 1 E 8 ILE A1061 LEU A1062 0 SHEET 2 E 8 GLY A1021 VAL A1024 1 N ILE A1022 O ILE A1061 SHEET 3 E 8 GLN A1500 TRP A1505 1 O TRP A1505 N ARG A1023 SHEET 4 E 8 THR A1441 GLU A1443 1 N PHE A1442 O GLN A1500 SHEET 5 E 8 ILE A1405 GLU A1407 1 N TYR A1406 O GLU A1443 SHEET 6 E 8 VAL A1200 TYR A1204 1 N VAL A1203 O GLU A1407 SHEET 7 E 8 SER A1128 PHE A1131 1 N SER A1128 O VAL A1200 SHEET 8 E 8 THR A1082 MET A1083 1 N THR A1082 O TYR A1129 SHEET 1 F 7 ASN A1118 ASP A1119 0 SHEET 2 F 7 GLN A1241 VAL A1245 -1 O GLN A1241 N ASP A1119 SHEET 3 F 7 LEU A1251 ARG A1255 -1 O THR A1252 N SER A1244 SHEET 4 F 7 ILE A1276 SER A1281 -1 O VAL A1278 N ASN A1253 SHEET 5 F 7 THR A1362 PRO A1370 -1 O ALA A1366 N VAL A1279 SHEET 6 F 7 LYS A1306 THR A1313 -1 N VAL A1310 O VAL A1367 SHEET 7 F 7 VAL A1329 TYR A1331 -1 O ALA A1330 N TYR A1307 SHEET 1 G 4 VAL A1318 ASN A1320 0 SHEET 2 G 4 LYS A1306 THR A1313 -1 N LEU A1312 O LYS A1319 SHEET 3 G 4 THR A1362 PRO A1370 -1 O VAL A1367 N VAL A1310 SHEET 4 G 4 TYR A1356 ALA A1357 -1 N TYR A1356 O GLY A1363 SHEET 1 H 2 VAL A1294 HIS A1297 0 SHEET 2 H 2 ASP A1337 PHE A1340 -1 O PHE A1340 N VAL A1294 SHEET 1 I 2 GLY A1641 GLU A1645 0 SHEET 2 I 2 ASN A1648 TYR A1652 -1 O ASN A1648 N GLU A1645 SHEET 1 J 2 ALA A1662 GLN A1665 0 SHEET 2 J 2 TRP A1671 LEU A1674 -1 O LEU A1674 N ALA A1662 SHEET 1 K 2 VAL A1687 ILE A1689 0 SHEET 2 K 2 GLY A1696 TYR A1698 -1 O TYR A1698 N VAL A1687 SHEET 1 L 3 GLN A1731 ASP A1735 0 SHEET 2 L 3 MET A1738 LEU A1742 -1 O TYR A1740 N VAL A1733 SHEET 3 L 3 LEU A1748 SER A1750 -1 O VAL A1749 N VAL A1741 LINK CA CA A 1 O HOH A 421 1555 1555 2.34 LINK CA CA A 1 O GLU A 979 1555 1555 2.32 LINK CA CA A 1 OE2 GLU A 979 1555 1555 2.40 LINK CA CA A 1 OD1 ASP A 985 1555 1555 2.33 LINK CA CA A 1 OD2 ASP A 985 1555 1555 2.55 LINK CA CA A 1 O ASN A1029 1555 1555 2.32 LINK CA CA A 1 OD1 ASP A1508 1555 1555 2.41 SITE 1 AC1 5 HOH A 421 GLU A 979 ASP A 985 ASN A1029 SITE 2 AC1 5 ASP A1508 SITE 1 AC2 3 HOH A 469 TRP A1415 LYS A1452 SITE 1 AC3 6 HOH A 82 HOH A 705 HOH A 717 HOH A 718 SITE 2 AC3 6 ASP A1333 ARG A1422 SITE 1 AC4 7 HOH A 58 HOH A 152 HOH A 637 ASP A1025 SITE 2 AC4 7 ASP A1458 VAL A1506 GLN A1509 SITE 1 AC5 7 HOH A 152 HOH A 427 HOH A 637 HOH A 638 SITE 2 AC5 7 GLU A1063 TRP A1065 GOL A1783 SITE 1 AC6 4 HOH A 171 HOH A 476 TRP A1065 GOL A1782 SITE 1 AC7 6 HOH A 184 THR A1530 TRP A1531 GLU A1532 SITE 2 AC7 6 VAL A1533 HOH A1795 SITE 1 AC8 6 HOH A 93 HOH A 641 MET A1092 GLY A1097 SITE 2 AC8 6 ASN A1138 LEU A1183 SITE 1 AC9 3 TYR A1698 ARG A1708 ASP A1724 CRYST1 58.279 65.949 82.506 73.30 78.46 85.82 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017159 -0.001254 -0.003283 0.00000 SCALE2 0.000000 0.015204 -0.004420 0.00000 SCALE3 0.000000 0.000000 0.012882 0.00000