HEADER LECTIN 07-NOV-96 3KMB TITLE COMPLEX OF 3'-SULFO-LEWIS-X WITH A SELECTIN-LIKE MUTANT OF MANNOSE- TITLE 2 BINDING PROTEIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-BINDING PROTEIN-A; COMPND 3 CHAIN: 1, 2, 3; COMPND 4 FRAGMENT: CLOSTRIPAIN FRAGMENT; COMPND 5 SYNONYM: K3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PINIIIOMPA2 KEYWDS LECTIN EXPDTA X-RAY DIFFRACTION AUTHOR K.K.-S.NG,W.I.WEIS REVDAT 6 09-AUG-23 3KMB 1 REMARK REVDAT 5 03-NOV-21 3KMB 1 SEQADV HETSYN REVDAT 4 29-JUL-20 3KMB 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 13-JUL-11 3KMB 1 VERSN REVDAT 2 24-FEB-09 3KMB 1 VERSN REVDAT 1 12-FEB-97 3KMB 0 JRNL AUTH K.K.NG,W.I.WEIS JRNL TITL STRUCTURE OF A SELECTIN-LIKE MUTANT OF MANNOSE-BINDING JRNL TITL 2 PROTEIN COMPLEXED WITH SIALYLATED AND SULFATED LEWIS(X) JRNL TITL 3 OLIGOSACCHARIDES. JRNL REF BIOCHEMISTRY V. 36 979 1997 JRNL REFN ISSN 0006-2960 JRNL PMID 9033386 JRNL DOI 10.1021/BI962564E REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH O.BLANCK,S.T.IOBST,C.GABEL,K.DRICKAMER REMARK 1 TITL INTRODUCTION OF SELECTIN-LIKE BINDING SPECIFICITY INTO A REMARK 1 TITL 2 HOMOLOGOUS MANNOSE-BINDING PROTEIN REMARK 1 REF J.BIOL.CHEM. V. 271 7289 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH W.I.WEIS,K.DRICKAMER REMARK 1 TITL TRIMERIC STRUCTURE OF A C-TYPE MANNOSE-BINDING PROTEIN REMARK 1 REF STRUCTURE V. 2 1227 1994 REMARK 1 REFN ISSN 0969-2126 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.54 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 100000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.1000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 41496 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4107 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3298 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 373 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3477 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 458 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.27000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : 4.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.12000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.200 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.200 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.000 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.100 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.100 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.300 ; 2.500 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAMCSDX_MOD.PRO REMARK 3 PARAMETER FILE 2 : PARAM3_MOD.CHO REMARK 3 PARAMETER FILE 3 : PARAM19.SOL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19_MOD.SOL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KMB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000179027. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : COLLIMATOR, MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : 0.25000 REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 1RTM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 8-10% REMARK 280 PEG 8000, 2% PEG 1000, 100 MM TRIS-CL, PH 7.8, 200 MM NACL, 20 REMARK 280 MM CACL2, 2 MM NAN3. PRIOR TO DATA COLLECTED, THE CRYSTAL WAS REMARK 280 SOAKED IN THE MOTHER LIQUOR MINUS PEG 8000, PLUS 35% PEG 400, REMARK 280 PLUS 80 MM 3'-SULFO- LEWIS-X. REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.45000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.55000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.45000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2, 3, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE PURIFIED PROTEIN WAS DIGESTED WITH CLOSTRIPAIN TO REMARK 400 PRODUCE THE FRAGMENT USED IN THE CRYSTAL STRUCTURE REMARK 400 ANALYSIS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS 1 152 -13.54 69.40 REMARK 500 THR 1 177 -88.37 -113.16 REMARK 500 ASN 1 180 44.50 -140.96 REMARK 500 ASP 1 188 53.73 39.97 REMARK 500 VAL 1 199 -135.85 -110.80 REMARK 500 LYS 2 152 -11.90 69.62 REMARK 500 ASN 2 180 54.13 -147.26 REMARK 500 VAL 2 199 -136.98 -91.86 REMARK 500 PRO 2 220 151.68 -48.34 REMARK 500 LYS 3 152 -25.70 76.99 REMARK 500 VAL 3 199 -178.63 -66.46 REMARK 500 ASP 3 200 43.41 -82.08 REMARK 500 ASN 3 201 22.07 -167.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FUC 2 222 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 1 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP 1 161 OD2 REMARK 620 2 ASP 1 161 OD1 51.9 REMARK 620 3 GLU 1 165 OE1 81.6 107.2 REMARK 620 4 GLU 1 165 OE2 74.9 126.0 49.6 REMARK 620 5 ASP 1 188 OD1 151.9 155.6 81.0 77.0 REMARK 620 6 GLU 1 193 O 133.1 88.7 140.8 142.4 72.0 REMARK 620 7 ASP 1 194 OD1 108.6 74.8 72.0 120.9 86.6 78.4 REMARK 620 8 HOH 1 308 O 84.9 97.1 135.2 85.6 92.2 75.0 152.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 1 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 1 185 OE1 REMARK 620 2 ASN 1 187 OD1 70.6 REMARK 620 3 GLU 1 193 OE1 146.7 78.1 REMARK 620 4 ASN 1 205 OD1 69.4 139.5 142.4 REMARK 620 5 ASP 1 206 OD1 74.8 84.4 91.2 91.6 REMARK 620 6 ASP 1 206 O 128.3 144.2 73.8 70.8 74.6 REMARK 620 7 FUC A 2 O2 77.3 74.7 105.7 90.1 149.4 134.1 REMARK 620 8 FUC A 2 O3 130.2 125.9 78.0 77.6 143.5 68.9 66.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 1 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 1 84 OE2 REMARK 620 2 GLU 1 165 OE1 88.6 REMARK 620 3 ASP 1 194 OD1 158.1 74.5 REMARK 620 4 ASP 1 194 OD2 149.3 120.8 51.4 REMARK 620 5 HOH 1 337 O 92.1 87.8 73.8 97.0 REMARK 620 6 HOH 1 338 O 73.4 162.0 122.7 77.0 92.1 REMARK 620 7 HOH 1 397 O 90.4 90.3 103.2 81.8 176.8 90.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 1 4 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH 1 282 O REMARK 620 2 GLU 2 93 OE1 81.8 REMARK 620 3 GLU 2 93 OE2 129.8 48.1 REMARK 620 4 HOH 2 311 O 90.2 82.0 80.8 REMARK 620 5 HOH 2 312 O 148.0 122.8 76.5 75.1 REMARK 620 6 HOH 2 313 O 76.6 151.2 146.9 79.4 72.9 REMARK 620 7 HOH 2 316 O 96.6 90.8 88.5 169.3 102.6 110.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 2 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP 2 161 OD2 REMARK 620 2 ASP 2 161 OD1 52.3 REMARK 620 3 GLU 2 165 OE1 83.5 108.0 REMARK 620 4 GLU 2 165 OE2 72.8 124.5 52.5 REMARK 620 5 ASP 2 188 OD1 149.4 155.2 74.0 77.1 REMARK 620 6 GLU 2 193 O 131.5 87.3 140.3 143.6 77.5 REMARK 620 7 ASP 2 194 OD1 107.8 73.2 71.3 123.7 84.6 79.0 REMARK 620 8 HOH 2 374 O 88.7 105.2 130.3 78.2 90.3 76.2 155.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 2 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 2 185 OE1 REMARK 620 2 ASN 2 187 OD1 80.0 REMARK 620 3 GLU 2 193 OE1 149.4 74.2 REMARK 620 4 ASN 2 205 OD1 67.1 145.2 140.6 REMARK 620 5 ASP 2 206 OD1 68.8 87.6 93.8 90.5 REMARK 620 6 ASP 2 206 O 124.5 137.9 69.8 73.9 73.9 REMARK 620 7 FUC 2 222 O2 77.1 84.3 115.6 77.9 145.8 130.9 REMARK 620 8 FUC 2 222 O3 124.5 122.5 83.8 72.1 147.3 74.7 58.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 2 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 2 165 OE1 REMARK 620 2 ASP 2 194 OD1 76.1 REMARK 620 3 ASP 2 194 OD2 125.3 52.1 REMARK 620 4 HOH 2 364 O 92.3 79.8 94.4 REMARK 620 5 HOH 2 365 O 99.0 104.6 80.5 168.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 3 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP 3 161 OD1 REMARK 620 2 ASP 3 161 OD2 49.0 REMARK 620 3 GLU 3 165 OE2 122.6 75.3 REMARK 620 4 GLU 3 165 OE1 104.0 84.3 51.0 REMARK 620 5 ASP 3 188 OD1 156.6 152.4 77.1 78.0 REMARK 620 6 GLU 3 193 O 90.6 129.3 143.2 142.0 75.4 REMARK 620 7 ASP 3 194 OD1 72.8 109.0 123.3 72.8 85.9 78.7 REMARK 620 8 HOH 3 278 O 100.4 81.2 80.7 131.6 94.8 77.6 155.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 3 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 3 185 OE1 REMARK 620 2 ASN 3 187 OD1 70.2 REMARK 620 3 GLU 3 193 OE1 146.3 78.7 REMARK 620 4 ASN 3 205 OD1 75.3 143.7 137.4 REMARK 620 5 ASP 3 206 OD1 74.8 85.3 90.6 96.2 REMARK 620 6 ASP 3 206 O 128.3 139.6 70.6 72.6 69.8 REMARK 620 7 FUC B 2 O3 134.6 118.3 71.9 79.3 145.6 76.5 REMARK 620 8 FUC B 2 O2 77.5 70.2 104.0 92.0 147.9 142.0 66.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA 3 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU 3 84 OE2 REMARK 620 2 GLU 3 165 OE1 86.0 REMARK 620 3 ASP 3 194 OD1 156.7 73.0 REMARK 620 4 ASP 3 194 OD2 151.8 119.4 51.5 REMARK 620 5 HOH 3 328 O 79.1 164.6 120.7 76.0 REMARK 620 6 HOH 3 330 O 85.1 88.4 103.9 83.7 94.5 REMARK 620 7 HOH 3 331 O 97.1 86.4 72.1 96.7 91.2 174.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: 11 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 1, PROTOMER 1. REMARK 800 REMARK 800 SITE_IDENTIFIER: 12 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 1, PROTOMER 2. REMARK 800 REMARK 800 SITE_IDENTIFIER: 13 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 1, PROTOMER 3. REMARK 800 REMARK 800 SITE_IDENTIFIER: 21 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 2, PROTOMER 1. REMARK 800 REMARK 800 SITE_IDENTIFIER: 22 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 2, PROTOMER 2. REMARK 800 REMARK 800 SITE_IDENTIFIER: 23 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 2, PROTOMER 3. REMARK 800 REMARK 800 SITE_IDENTIFIER: 31 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 3, PROTOMER 1. REMARK 800 REMARK 800 SITE_IDENTIFIER: 32 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 3, PROTOMER 2. REMARK 800 REMARK 800 SITE_IDENTIFIER: 33 REMARK 800 EVIDENCE_CODE: UNKNOWN REMARK 800 SITE_DESCRIPTION: CA SITE 3, PROTOMER 3. DBREF 3KMB 1 73 221 UNP P19999 MABA_RAT 90 238 DBREF 3KMB 2 73 221 UNP P19999 MABA_RAT 90 238 DBREF 3KMB 3 73 221 UNP P19999 MABA_RAT 90 238 SEQADV 3KMB LYS 1 211 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 3KMB LYS 1 212 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 3KMB LYS 1 213 UNP P19999 HIS 230 ENGINEERED MUTATION SEQADV 3KMB LYS 2 211 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 3KMB LYS 2 212 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 3KMB LYS 2 213 UNP P19999 HIS 230 ENGINEERED MUTATION SEQADV 3KMB LYS 3 211 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 3KMB LYS 3 212 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 3KMB LYS 3 213 UNP P19999 HIS 230 ENGINEERED MUTATION SEQRES 1 1 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 1 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 1 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 1 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 1 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 1 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 1 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 1 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 1 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP HIS SEQRES 10 1 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 1 149 LEU TRP ASN ASP ILE SER CYS GLN LYS LYS LYS THR ALA SEQRES 12 1 149 VAL CYS GLU PHE PRO ALA SEQRES 1 2 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 2 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 2 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 2 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 2 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 2 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 2 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 2 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 2 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP HIS SEQRES 10 2 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 2 149 LEU TRP ASN ASP ILE SER CYS GLN LYS LYS LYS THR ALA SEQRES 12 2 149 VAL CYS GLU PHE PRO ALA SEQRES 1 3 149 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 3 149 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 3 149 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 3 149 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 3 149 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 3 149 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 3 149 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 3 149 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 3 149 THR TYR SER ASN TRP LYS LYS ASP GLU PRO ASN ASP HIS SEQRES 10 3 149 GLY SER GLY GLU ASP CYS VAL THR ILE VAL ASP ASN GLY SEQRES 11 3 149 LEU TRP ASN ASP ILE SER CYS GLN LYS LYS LYS THR ALA SEQRES 12 3 149 VAL CYS GLU PHE PRO ALA HET MAG A 1 16 HET FUC A 2 10 HET SGA A 3 15 HET NAG B 1 15 HET FUC B 2 10 HET SGA B 3 15 HET CA 1 1 1 HET CA 1 2 1 HET CA 1 3 1 HET CA 1 4 1 HET CL 1 5 1 HET FUC 2 222 10 HET CA 2 1 1 HET CA 2 2 1 HET CA 2 3 1 HET CL 2 4 1 HET CA 3 1 1 HET CA 3 2 1 HET CA 3 3 1 HET CL 3 4 1 HETNAM MAG METHYL 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSIDE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SGA 3-O-SULFO-BETA-D-GALACTOPYRANOSE HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN MAG BETA-METHYL-N-ACETYL-D-GLUCOSAMINE; METHYL 2-ACETAMIDO- HETSYN 2 MAG 2-DEOXY-BETA-D-GLUCOSIDE; METHYL 2-ACETAMIDO-2-DEOXY- HETSYN 3 MAG D-GLUCOSIDE; METHYL 2-ACETAMIDO-2-DEOXY-GLUCOSIDE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN SGA O3-SULFONYLGALACTOSE; 3-O-SULFO-BETA-D-GALACTOSE; 3-O- HETSYN 2 SGA SULFO-D-GALACTOSE; 3-O-SULFO-GALACTOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 MAG C9 H17 N O6 FORMUL 4 FUC 3(C6 H12 O5) FORMUL 4 SGA 2(C6 H12 O9 S) FORMUL 5 NAG C8 H15 N O6 FORMUL 6 CA 10(CA 2+) FORMUL 10 CL 3(CL 1-) FORMUL 20 HOH *458(H2 O) HELIX 1 1 ILE 1 74 MET 1 103 1 30 HELIX 2 2 PHE 1 121 LEU 1 131 1 11 HELIX 3 3 ALA 1 141 ALA 1 151 1 11 HELIX 4 4 ASP 1 200 GLY 1 202 5 3 HELIX 5 5 ILE 2 74 SER 2 102 1 29 HELIX 6 6 PHE 2 121 GLU 2 130 1 10 HELIX 7 7 ALA 2 141 ALA 2 151 1 11 HELIX 8 8 ASP 2 200 GLY 2 202 5 3 HELIX 9 9 ILE 3 74 SER 3 102 1 29 HELIX 10 10 PHE 3 121 GLU 3 130 1 10 HELIX 11 11 ALA 3 141 ALA 3 151 1 11 SHEET 1 A 2 PHE 1 111 THR 1 114 0 SHEET 2 A 2 VAL 1 216 PHE 1 219 -1 N PHE 1 219 O PHE 1 111 SHEET 1 B 2 ARG 1 118 PRO 1 120 0 SHEET 2 B 2 LYS 1 212 THR 1 214 -1 N LYS 1 213 O MET 1 119 SHEET 1 C 2 CYS 1 195 ILE 1 198 0 SHEET 2 C 2 TRP 1 204 ILE 1 207 -1 N ILE 1 207 O CYS 1 195 SHEET 1 D 2 PHE 2 111 THR 2 114 0 SHEET 2 D 2 VAL 2 216 PHE 2 219 -1 N PHE 2 219 O PHE 2 111 SHEET 1 E 2 CYS 2 195 ILE 2 198 0 SHEET 2 E 2 TRP 2 204 ILE 2 207 -1 N ILE 2 207 O CYS 2 195 SHEET 1 F 2 PHE 3 111 THR 3 114 0 SHEET 2 F 2 VAL 3 216 PHE 3 219 -1 N PHE 3 219 O PHE 3 111 SHEET 1 G 2 CYS 3 195 ILE 3 198 0 SHEET 2 G 2 TRP 3 204 ILE 3 207 -1 N ILE 3 207 O CYS 3 195 SSBOND 1 CYS 1 128 CYS 1 217 1555 1555 2.04 SSBOND 2 CYS 1 195 CYS 1 209 1555 1555 2.03 SSBOND 3 CYS 2 128 CYS 2 217 1555 1555 2.03 SSBOND 4 CYS 2 195 CYS 2 209 1555 1555 2.03 SSBOND 5 CYS 3 128 CYS 3 217 1555 1555 2.04 SSBOND 6 CYS 3 195 CYS 3 209 1555 1555 2.03 LINK O3 MAG A 1 C1 FUC A 2 1555 1555 1.40 LINK O4 MAG A 1 C1 SGA A 3 1555 1555 1.39 LINK O3 NAG B 1 C1 FUC B 2 1555 1555 1.41 LINK O4 NAG B 1 C1 SGA B 3 1555 1555 1.39 LINK CA CA 1 1 OD2 ASP 1 161 1555 1555 2.33 LINK CA CA 1 1 OD1 ASP 1 161 1555 1555 2.57 LINK CA CA 1 1 OE1 GLU 1 165 1555 1555 2.62 LINK CA CA 1 1 OE2 GLU 1 165 1555 1555 2.60 LINK CA CA 1 1 OD1 ASP 1 188 1555 1555 2.64 LINK CA CA 1 1 O GLU 1 193 1555 1555 2.44 LINK CA CA 1 1 OD1 ASP 1 194 1555 1555 2.39 LINK CA CA 1 1 O HOH 1 308 1555 1555 2.35 LINK CA CA 1 2 OE1 GLU 1 185 1555 1555 2.52 LINK CA CA 1 2 OD1 ASN 1 187 1555 1555 2.35 LINK CA CA 1 2 OE1 GLU 1 193 1555 1555 2.35 LINK CA CA 1 2 OD1 ASN 1 205 1555 1555 2.55 LINK CA CA 1 2 OD1 ASP 1 206 1555 1555 2.30 LINK CA CA 1 2 O ASP 1 206 1555 1555 2.57 LINK CA CA 1 2 O2 FUC A 2 1555 1555 2.52 LINK CA CA 1 2 O3 FUC A 2 1555 1555 2.68 LINK CA CA 1 3 OE2 GLU 1 84 1555 3545 2.34 LINK CA CA 1 3 OE1 GLU 1 165 1555 1555 2.29 LINK CA CA 1 3 OD1 ASP 1 194 1555 1555 2.57 LINK CA CA 1 3 OD2 ASP 1 194 1555 1555 2.46 LINK CA CA 1 3 O HOH 1 337 1555 1555 2.43 LINK CA CA 1 3 O HOH 1 338 1555 1555 2.45 LINK CA CA 1 3 O HOH 1 397 1555 1555 2.36 LINK CA CA 1 4 O HOH 1 282 1555 1555 2.38 LINK CA CA 1 4 OE1 GLU 2 93 1555 1555 2.39 LINK CA CA 1 4 OE2 GLU 2 93 1555 1555 2.90 LINK CA CA 1 4 O HOH 2 311 1555 1555 2.55 LINK CA CA 1 4 O HOH 2 312 1555 1555 2.38 LINK CA CA 1 4 O HOH 2 313 1555 1555 2.58 LINK CA CA 1 4 O HOH 2 316 1555 1555 2.39 LINK CA CA 2 1 OD2 ASP 2 161 1555 1555 2.28 LINK CA CA 2 1 OD1 ASP 2 161 1555 1555 2.60 LINK CA CA 2 1 OE1 GLU 2 165 1555 1555 2.35 LINK CA CA 2 1 OE2 GLU 2 165 1555 1555 2.60 LINK CA CA 2 1 OD1 ASP 2 188 1555 1555 2.70 LINK CA CA 2 1 O GLU 2 193 1555 1555 2.36 LINK CA CA 2 1 OD1 ASP 2 194 1555 1555 2.55 LINK CA CA 2 1 O HOH 2 374 1555 1555 2.29 LINK CA CA 2 2 OE1 GLU 2 185 1555 1555 2.61 LINK CA CA 2 2 OD1 ASN 2 187 1555 1555 2.46 LINK CA CA 2 2 OE1 GLU 2 193 1555 1555 2.22 LINK CA CA 2 2 OD1 ASN 2 205 1555 1555 2.55 LINK CA CA 2 2 OD1 ASP 2 206 1555 1555 2.55 LINK CA CA 2 2 O ASP 2 206 1555 1555 2.56 LINK CA CA 2 2 O2 FUC 2 222 1555 1555 2.88 LINK CA CA 2 2 O3 FUC 2 222 1555 1555 2.88 LINK CA CA 2 3 OE1 GLU 2 165 1555 1555 2.31 LINK CA CA 2 3 OD1 ASP 2 194 1555 1555 2.34 LINK CA CA 2 3 OD2 ASP 2 194 1555 1555 2.63 LINK CA CA 2 3 O HOH 2 364 1555 1555 2.31 LINK CA CA 2 3 O HOH 2 365 1555 1555 2.26 LINK CA CA 3 1 OD1 ASP 3 161 1555 1555 2.74 LINK CA CA 3 1 OD2 ASP 3 161 1555 1555 2.47 LINK CA CA 3 1 OE2 GLU 3 165 1555 1555 2.48 LINK CA CA 3 1 OE1 GLU 3 165 1555 1555 2.58 LINK CA CA 3 1 OD1 ASP 3 188 1555 1555 2.47 LINK CA CA 3 1 O GLU 3 193 1555 1555 2.44 LINK CA CA 3 1 OD1 ASP 3 194 1555 1555 2.32 LINK CA CA 3 1 O HOH 3 278 1555 1555 2.39 LINK CA CA 3 2 OE1 GLU 3 185 1555 1555 2.65 LINK CA CA 3 2 OD1 ASN 3 187 1555 1555 2.47 LINK CA CA 3 2 OE1 GLU 3 193 1555 1555 2.50 LINK CA CA 3 2 OD1 ASN 3 205 1555 1555 2.61 LINK CA CA 3 2 OD1 ASP 3 206 1555 1555 2.27 LINK CA CA 3 2 O ASP 3 206 1555 1555 2.62 LINK CA CA 3 2 O3 FUC B 2 1555 1555 2.42 LINK CA CA 3 2 O2 FUC B 2 1555 1555 2.73 LINK CA CA 3 3 OE2 GLU 3 84 1555 3555 2.41 LINK CA CA 3 3 OE1 GLU 3 165 1555 1555 2.30 LINK CA CA 3 3 OD1 ASP 3 194 1555 1555 2.58 LINK CA CA 3 3 OD2 ASP 3 194 1555 1555 2.44 LINK CA CA 3 3 O HOH 3 328 1555 1555 2.38 LINK CA CA 3 3 O HOH 3 330 1555 1555 2.30 LINK CA CA 3 3 O HOH 3 331 1555 1555 2.45 CISPEP 1 GLU 1 185 PRO 1 186 0 0.45 CISPEP 2 GLU 2 185 PRO 2 186 0 -0.09 CISPEP 3 GLU 3 185 PRO 3 186 0 -0.10 SITE 1 11 7 CA 1 1 ASP 1 161 GLU 1 165 ASP 1 188 SITE 2 11 7 GLU 1 193 ASP 1 194 HOH 2 337 SITE 1 12 7 CA 2 1 ASP 2 161 GLU 2 165 ASP 2 188 SITE 2 12 7 GLU 2 193 ASP 2 194 HOH 2 259 SITE 1 13 7 CA 3 1 ASP 3 161 GLU 3 165 ASP 3 188 SITE 2 13 7 GLU 3 193 ASP 3 194 HOH 1 314 SITE 1 21 7 CA 1 2 GLU 1 185 ASN 1 187 GLU 1 193 SITE 2 21 7 ASN 1 205 ASP 1 206 HOH 2 335 SITE 1 22 7 CA 2 2 GLU 2 185 ASN 2 187 GLU 2 193 SITE 2 22 7 ASN 2 205 ASP 2 206 HOH 2 266 SITE 1 23 8 CA 3 2 GLU 3 185 ASN 3 187 GLU 3 193 SITE 2 23 8 ASN 3 205 ASP 3 206 HOH 1 306 HOH 1 307 SITE 1 31 6 CA 1 3 GLU 1 165 ASP 1 194 HOH 2 338 SITE 2 31 6 HOH 2 344 HOH 2 345 SITE 1 32 4 CA 2 3 GLU 2 165 ASP 2 194 HOH 2 260 SITE 1 33 4 CA 3 3 GLU 3 165 ASP 3 194 HOH 2 357 CRYST1 79.100 84.900 97.200 90.00 106.60 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012642 0.000000 0.003769 0.00000 SCALE2 0.000000 0.011779 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010735 0.00000 MTRIX1 1 0.510309 -0.489331 -0.707205 37.00300 1 MTRIX2 1 0.524955 -0.474115 0.706850 4.47000 1 MTRIX3 1 -0.681181 -0.731963 0.014931 52.41900 1 MTRIX1 2 0.510205 0.475900 -0.716387 16.55000 1 MTRIX2 2 -0.462496 -0.550452 -0.695054 58.85400 1 MTRIX3 2 -0.725113 0.685946 -0.060742 25.22900 1