HEADER    TRANSFERASE/RNA                         11-NOV-09   3KMQ              
TITLE     G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX 
TITLE    2 WITH A TEMPLATE- PRIMER RNA, TETRAGONAL STRUCTURE                    
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 3D POLYMERASE;                                             
COMPND   3 CHAIN: A;                                                            
COMPND   4 SYNONYM: RNA DEPENDENT RNA POLYMERASE;                               
COMPND   5 EC: 2.7.7.48;                                                        
COMPND   6 ENGINEERED: YES;                                                     
COMPND   7 MUTATION: YES;                                                       
COMPND   8 MOL_ID: 2;                                                           
COMPND   9 MOLECULE: RNA (5'-R(P*GP*GP*GP*CP*C)-3');                            
COMPND  10 CHAIN: B;                                                            
COMPND  11 ENGINEERED: YES;                                                     
COMPND  12 MOL_ID: 3;                                                           
COMPND  13 MOLECULE: RNA (5'-R(*GP*GP*CP*CP*C)-3');                             
COMPND  14 CHAIN: C;                                                            
COMPND  15 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C;          
SOURCE   3 ORGANISM_TAXID: 12116;                                               
SOURCE   4 GENE: 3D;                                                            
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI;                                 
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 511693;                                     
SOURCE   7 EXPRESSION_SYSTEM_STRAIN: BL21;                                      
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PET 28A;                                  
SOURCE  10 MOL_ID: 2;                                                           
SOURCE  11 SYNTHETIC: YES;                                                      
SOURCE  12 MOL_ID: 3;                                                           
SOURCE  13 SYNTHETIC: YES                                                       
KEYWDS    3D, POLYMERASE, RNA DEPENDENT RNA POLYMERASE, RIBAVIRIN, FOOT-AND-    
KEYWDS   2 MOUTH DISEASE VIRUS, TRANSFERASE-RNA COMPLEX                         
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    C.FERRER-ORTA,N.VERDAGUER,R.PEREZ-LUQUE                               
REVDAT   2   01-NOV-23 3KMQ    1       SEQADV                                   
REVDAT   1   07-JUL-10 3KMQ    0                                                
JRNL        AUTH   C.FERRER-ORTA,M.SIERRA,R.AGUDO,I.DE LA HIGUERA,A.ARIAS,      
JRNL        AUTH 2 R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO,N.VERDAGUER               
JRNL        TITL   STRUCTURE OF FOOT-AND-MOUTH DISEASE VIRUS MUTANT POLYMERASES 
JRNL        TITL 2 WITH REDUCED SENSITIVITY TO RIBAVIRIN                        
JRNL        REF    J.VIROL.                      V.  84  6188 2010              
JRNL        REFN                   ISSN 0022-538X                               
JRNL        PMID   20392853                                                     
JRNL        DOI    10.1128/JVI.02420-09                                         
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.11 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : REFMAC 5.2.0019                                      
REMARK   3   AUTHORS     : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,              
REMARK   3               : NICHOLLS,WINN,LONG,VAGIN                             
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : MAXIMUM LIKELIHOOD                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 20.00                          
REMARK   3   DATA CUTOFF            (SIGMA(F)) : NULL                           
REMARK   3   COMPLETENESS FOR RANGE        (%) : 98.8                           
REMARK   3   NUMBER OF REFLECTIONS             : 59460                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   CROSS-VALIDATION METHOD          : THROUGHOUT                      
REMARK   3   FREE R VALUE TEST SET SELECTION  : RANDOM                          
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.241                           
REMARK   3   R VALUE            (WORKING SET) : 0.240                           
REMARK   3   FREE R VALUE                     : 0.267                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 5.100                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1583                            
REMARK   3                                                                      
REMARK   3  FIT IN THE HIGHEST RESOLUTION BIN.                                  
REMARK   3   TOTAL NUMBER OF BINS USED           : 20                           
REMARK   3   BIN RESOLUTION RANGE HIGH       (A) : 2.11                         
REMARK   3   BIN RESOLUTION RANGE LOW        (A) : 2.16                         
REMARK   3   REFLECTION IN BIN     (WORKING SET) : 2180                         
REMARK   3   BIN COMPLETENESS (WORKING+TEST) (%) : 100.0                        
REMARK   3   BIN R VALUE           (WORKING SET) : 0.2900                       
REMARK   3   BIN FREE R VALUE SET COUNT          : 107                          
REMARK   3   BIN FREE R VALUE                    : 0.3370                       
REMARK   3                                                                      
REMARK   3  NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.                    
REMARK   3   PROTEIN ATOMS            : 3758                                    
REMARK   3   NUCLEIC ACID ATOMS       : 212                                     
REMARK   3   HETEROGEN ATOMS          : 0                                       
REMARK   3   SOLVENT ATOMS            : 95                                      
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : 48.98                          
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : -0.11000                                             
REMARK   3    B22 (A**2) : -0.11000                                             
REMARK   3    B33 (A**2) : 0.21000                                              
REMARK   3    B12 (A**2) : 0.00000                                              
REMARK   3    B13 (A**2) : 0.00000                                              
REMARK   3    B23 (A**2) : 0.00000                                              
REMARK   3                                                                      
REMARK   3  ESTIMATED OVERALL COORDINATE ERROR.                                 
REMARK   3   ESU BASED ON R VALUE                            (A): 0.284         
REMARK   3   ESU BASED ON FREE R VALUE                       (A): 0.213         
REMARK   3   ESU BASED ON MAXIMUM LIKELIHOOD                 (A): 0.172         
REMARK   3   ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.164        
REMARK   3                                                                      
REMARK   3 CORRELATION COEFFICIENTS.                                            
REMARK   3   CORRELATION COEFFICIENT FO-FC      : 0.936                         
REMARK   3   CORRELATION COEFFICIENT FO-FC FREE : 0.919                         
REMARK   3                                                                      
REMARK   3  RMS DEVIATIONS FROM IDEAL VALUES        COUNT    RMS    WEIGHT      
REMARK   3   BOND LENGTHS REFINED ATOMS        (A):  4084 ; 0.006 ; 0.022       
REMARK   3   BOND LENGTHS OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   BOND ANGLES REFINED ATOMS   (DEGREES):  5577 ; 0.841 ; 2.016       
REMARK   3   BOND ANGLES OTHERS          (DEGREES):  NULL ;  NULL ;  NULL       
REMARK   3   TORSION ANGLES, PERIOD 1    (DEGREES):   475 ; 4.104 ; 5.000       
REMARK   3   TORSION ANGLES, PERIOD 2    (DEGREES):   183 ;35.267 ;23.443       
REMARK   3   TORSION ANGLES, PERIOD 3    (DEGREES):   639 ;14.176 ;15.000       
REMARK   3   TORSION ANGLES, PERIOD 4    (DEGREES):    27 ;11.576 ;15.000       
REMARK   3   CHIRAL-CENTER RESTRAINTS       (A**3):   615 ; 0.054 ; 0.200       
REMARK   3   GENERAL PLANES REFINED ATOMS      (A):  3065 ; 0.002 ; 0.020       
REMARK   3   GENERAL PLANES OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED CONTACTS REFINED ATOMS (A):  1681 ; 0.160 ; 0.200       
REMARK   3   NON-BONDED CONTACTS OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   NON-BONDED TORSION REFINED ATOMS  (A):  2759 ; 0.290 ; 0.200       
REMARK   3   NON-BONDED TORSION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3   H-BOND (X...Y) REFINED ATOMS      (A):   182 ; 0.102 ; 0.200       
REMARK   3   H-BOND (X...Y) OTHERS             (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION REFINED ATOMS (A):  NULL ;  NULL ;  NULL       
REMARK   3   POTENTIAL METAL-ION OTHERS        (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY VDW REFINED ATOMS        (A):    29 ; 0.136 ; 0.200       
REMARK   3   SYMMETRY VDW OTHERS               (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY H-BOND REFINED ATOMS     (A):     4 ; 0.052 ; 0.200       
REMARK   3   SYMMETRY H-BOND OTHERS            (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION REFINED ATOMS  (A):  NULL ;  NULL ;  NULL       
REMARK   3   SYMMETRY METAL-ION OTHERS         (A):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  ISOTROPIC THERMAL FACTOR RESTRAINTS.     COUNT   RMS    WEIGHT      
REMARK   3   MAIN-CHAIN BOND REFINED ATOMS  (A**2):  2429 ; 0.239 ; 1.500       
REMARK   3   MAIN-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   MAIN-CHAIN ANGLE REFINED ATOMS (A**2):  3811 ; 0.420 ; 2.000       
REMARK   3   MAIN-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN BOND REFINED ATOMS  (A**2):  1942 ; 0.410 ; 3.000       
REMARK   3   SIDE-CHAIN BOND OTHER ATOMS    (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SIDE-CHAIN ANGLE REFINED ATOMS (A**2):  1766 ; 0.631 ; 4.500       
REMARK   3   SIDE-CHAIN ANGLE OTHER ATOMS   (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B REFINED ATOMS     (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   LONG RANGE B OTHER ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3 ANISOTROPIC THERMAL FACTOR RESTRAINTS.    COUNT   RMS   WEIGHT       
REMARK   3   RIGID-BOND RESTRAINTS          (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; FREE ATOMS         (A**2):  NULL ;  NULL ;  NULL       
REMARK   3   SPHERICITY; BONDED ATOMS       (A**2):  NULL ;  NULL ;  NULL       
REMARK   3                                                                      
REMARK   3  NCS RESTRAINTS STATISTICS                                           
REMARK   3   NUMBER OF DIFFERENT NCS GROUPS : NULL                              
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED : MASK                                                 
REMARK   3   PARAMETERS FOR MASK CALCULATION                                    
REMARK   3   VDW PROBE RADIUS   : 1.20                                          
REMARK   3   ION PROBE RADIUS   : 0.80                                          
REMARK   3   SHRINKAGE RADIUS   : 0.80                                          
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING   
REMARK   3  POSITIONS. THE FILE CONTAINS FRIEDEL PAIRS.                         
REMARK   4                                                                      
REMARK   4 3KMQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-09.                  
REMARK 100 THE DEPOSITION ID IS D_1000056184.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 04-JUL-08                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 7.0                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : APS                                
REMARK 200  BEAMLINE                       : 14-ID-B                            
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.98                               
REMARK 200  MONOCHROMATOR                  : SI 111 CHANNEL                     
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315R                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : MOSFLM                             
REMARK 200  DATA SCALING SOFTWARE          : SCALA                              
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 59922                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.100                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 20.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : 2.000                              
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.7                               
REMARK 200  DATA REDUNDANCY                : 4.100                              
REMARK 200  R MERGE                    (I) : 0.06300                            
REMARK 200  R SYM                      (I) : 0.07400                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 14.9000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 2.21                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : 100.0                              
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.49000                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : 3.000                              
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: AMORE                                                 
REMARK 200 STARTING MODEL: 1WNE                                                 
REMARK 200                                                                      
REMARK 200 REMARK: THE FILE CONTAINS FRIEDEL PAIRS.                             
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 47.50                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 4000, 0.2M MAGNESIUM ACETATE,    
REMARK 280  0.1M HEPES PH 7.0, 4% BUTYROLACTONE, VAPOR DIFFUSION, HANGING       
REMARK 280  DROP, TEMPERATURE 293K                                              
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+1/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+3/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+1/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+3/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       60.55250            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       46.83050            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       46.83050            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       30.27625            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       46.83050            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       46.83050            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       90.82875            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       46.83050            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       46.83050            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       30.27625            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       46.83050            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       46.83050            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       90.82875            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       60.55250            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC                          
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC                   
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 2870 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 21720 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C                               
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     ARG A 417    CG   CD   NE   CZ   NH1  NH2                        
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500      G B 906   O4' -  C1' -  N9  ANGL. DEV. =   4.5 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    GLU A  33       48.82    -82.92                                   
REMARK 500    PHE A 261       44.60   -101.85                                   
REMARK 500    GLU A 286     -120.69     56.13                                   
REMARK 500    LYS A 372       47.84    -88.52                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1U09   RELATED DB: PDB                                   
REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE            
REMARK 900 RELATED ID: 1WNE   RELATED DB: PDB                                   
REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN         
REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA                                   
REMARK 900 RELATED ID: 2D7S   RELATED DB: PDB                                   
REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN         
REMARK 900 COMPLEX WITH VPG PROTEIN                                             
REMARK 900 RELATED ID: 2F8E   RELATED DB: PDB                                   
REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN         
REMARK 900 COMPLEX WITH URIDYLYLATED VPG PROTEIN                                
REMARK 900 RELATED ID: 2E9Z   RELATED DB: PDB                                   
REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A        
REMARK 900 TEMPLATE- PRIMER RNA, ATP AND UTP                                    
REMARK 900 RELATED ID: 2E9T   RELATED DB: PDB                                   
REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE RNA DEPENDENT IN         
REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA AND 5F-UTP                        
REMARK 900 RELATED ID: 3KLV   RELATED DB: PDB                                   
REMARK 900 M296I G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN  
REMARK 900 COMPLEX WITH A TEMPLATE- PRIMER RNA                                  
REMARK 900 RELATED ID: 3KMS   RELATED DB: PDB                                   
REMARK 900 G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN        
REMARK 900 COMPLEX WITH A TEMPLATE- PRIMER RNA TRIGONAL STRUCTURE               
REMARK 900 RELATED ID: 3KNA   RELATED DB: PDB                                   
REMARK 900 M296I MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN       
REMARK 900 COMPLEX WITH A TEMPLATE- PRIMER RNA                                  
REMARK 900 RELATED ID: 3KOA   RELATED DB: PDB                                   
REMARK 900 M296I MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN       
REMARK 900 COMPLEX WITH A TEMPLATE- PRIMER RNA AND GTP                          
DBREF  3KMQ A    1   470  UNP    Q9QCE3   Q9QCE3_9PICO  1858   2327             
DBREF  3KMQ B  905   909  PDB    3KMQ     3KMQ           905    909             
DBREF  3KMQ C  916   920  PDB    3KMQ     3KMQ           916    920             
SEQADV 3KMQ SER A   62  UNP  Q9QCE3    GLY  1919 ENGINEERED MUTATION            
SEQADV 3KMQ ALA A  471  UNP  Q9QCE3              EXPRESSION TAG                 
SEQADV 3KMQ ALA A  472  UNP  Q9QCE3              EXPRESSION TAG                 
SEQADV 3KMQ LEU A  473  UNP  Q9QCE3              EXPRESSION TAG                 
SEQADV 3KMQ GLU A  474  UNP  Q9QCE3              EXPRESSION TAG                 
SEQADV 3KMQ HIS A  475  UNP  Q9QCE3              EXPRESSION TAG                 
SEQADV 3KMQ HIS A  476  UNP  Q9QCE3              EXPRESSION TAG                 
SEQRES   1 A  476  GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL          
SEQRES   2 A  476  HIS VAL MET ARG LYS THR LYS LEU ALA PRO THR VAL ALA          
SEQRES   3 A  476  HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU          
SEQRES   4 A  476  SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU          
SEQRES   5 A  476  ASP GLU VAL ILE PHE SER LYS HIS LYS SER ASP THR LYS          
SEQRES   6 A  476  MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA          
SEQRES   7 A  476  ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR          
SEQRES   8 A  476  ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY          
SEQRES   9 A  476  VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO          
SEQRES  10 A  476  GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA          
SEQRES  11 A  476  LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL          
SEQRES  12 A  476  GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS          
SEQRES  13 A  476  PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO          
SEQRES  14 A  476  MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP          
SEQRES  15 A  476  VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET          
SEQRES  16 A  476  ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY          
SEQRES  17 A  476  PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL          
SEQRES  18 A  476  ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG          
SEQRES  19 A  476  ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN          
SEQRES  20 A  476  HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL          
SEQRES  21 A  476  PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP          
SEQRES  22 A  476  ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU          
SEQRES  23 A  476  ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY          
SEQRES  24 A  476  CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN          
SEQRES  25 A  476  ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY          
SEQRES  26 A  476  VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP          
SEQRES  27 A  476  ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU          
SEQRES  28 A  476  ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE          
SEQRES  29 A  476  THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY          
SEQRES  30 A  476  HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE          
SEQRES  31 A  476  HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET          
SEQRES  32 A  476  ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG          
SEQRES  33 A  476  ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY          
SEQRES  34 A  476  LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU          
SEQRES  35 A  476  PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR          
SEQRES  36 A  476  ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY          
SEQRES  37 A  476  ASP ALA ALA ALA LEU GLU HIS HIS                              
SEQRES   1 B    5    G   G   G   C   C                                          
SEQRES   1 C    5    G   G   C   C   C                                          
FORMUL   4  HOH   *95(H2 O)                                                     
HELIX    1   1 ALA A   26  ASN A   31  1                                   6    
HELIX    2   2 VAL A   51  ILE A   56  1                                   6    
HELIX    3   3 SER A   67  GLY A   90  1                                  24    
HELIX    4   4 SER A   97  GLY A  104  1                                   8    
HELIX    5   5 ARG A  127  LEU A  131  1                                   5    
HELIX    6   6 GLY A  140  LYS A  152  1                                  13    
HELIX    7   7 MET A  170  GLY A  176  1                                   7    
HELIX    8   8 PRO A  185  ASN A  206  1                                  22    
HELIX    9   9 ASN A  218  ALA A  231  1                                  14    
HELIX   10  10 CYS A  249  PHE A  261  1                                  13    
HELIX   11  11 ARG A  262  GLY A  266  5                                   5    
HELIX   12  12 PRO A  269  THR A  277  1                                   9    
HELIX   13  13 ALA A  302  TYR A  323  1                                  22    
HELIX   14  14 LEU A  353  SER A  359  1                                   7    
HELIX   15  15 SER A  379  ASP A  382  5                                   4    
HELIX   16  16 ALA A  404  SER A  413  1                                  10    
HELIX   17  17 THR A  419  VAL A  432  1                                  14    
HELIX   18  18 GLY A  435  GLU A  444  1                                  10    
HELIX   19  19 PRO A  445  GLN A  447  5                                   3    
HELIX   20  20 SER A  454  CYS A  467  1                                  14    
HELIX   21  21 CYS A  467  GLU A  474  1                                   8    
SHEET    1   A 5 LEU A   2  ASP A   8  0                                        
SHEET    2   A 5 LYS A 288  GLU A 293 -1  O  ARG A 289   N  ARG A   7           
SHEET    3   A 5 ASN A 280  TYR A 285 -1  N  THR A 281   O  VAL A 292           
SHEET    4   A 5 CYS A 159  LEU A 163  1  N  CYS A 159   O  GLU A 282           
SHEET    5   A 5 ILE A 180  VAL A 183 -1  O  VAL A 181   N  PHE A 162           
SHEET    1   B 2 LEU A  21  PRO A  23  0                                        
SHEET    2   B 2 PHE A 414  ARG A 416 -1  O  ALA A 415   N  ALA A  22           
SHEET    1   C 2 PHE A  34  PRO A  36  0                                        
SHEET    2   C 2 ILE A 167  PRO A 169 -1  O  ARG A 168   N  GLY A  35           
SHEET    1   D 2 ILE A 132  ASP A 133  0                                        
SHEET    2   D 2 THR A 138  VAL A 139 -1  O  THR A 138   N  ASP A 133           
SHEET    1   E 4 THR A 332  TYR A 336  0                                        
SHEET    2   E 4 ASP A 339  SER A 344 -1  O  ALA A 343   N  THR A 332           
SHEET    3   E 4 ASN A 235  TYR A 241 -1  N  TRP A 237   O  VAL A 342           
SHEET    4   E 4 ILE A 364  PRO A 366 -1  O  THR A 365   N  ASP A 240           
SHEET    1   F 3 THR A 384  PHE A 385  0                                        
SHEET    2   F 3 ARG A 388  MET A 392 -1  O  ARG A 388   N  PHE A 385           
SHEET    3   F 3 TYR A 399  VAL A 402 -1  O  VAL A 402   N  HIS A 389           
CISPEP   1 LEU A  119    PRO A  120          0         0.30                     
CRYST1   93.661   93.661  121.105  90.00  90.00  90.00 P 41 21 2     8          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.010677  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.010677  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.008257        0.00000