HEADER TRANSFERASE/RNA 11-NOV-09 3KMS TITLE G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX TITLE 2 WITH A TEMPLATE- PRIMER RNA TRIGONAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3D POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA DEPENDENT RNA POLYMERASE; COMPND 5 EC: 2.7.7.48; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RNA (5'-R(*AP*UP*GP*GP*GP*CP*C)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: RNA (5'-R(*GP*GP*CP*CP*C)-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C; SOURCE 3 ORGANISM_TAXID: 12116; SOURCE 4 STRAIN: C-S8C1; SOURCE 5 GENE: 3D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS 3D, POLYMERASE, RIBAVIRIN, FOOT-AND MOUTH DISEASE VIRUS, RNA KEYWDS 2 DEPENDENT RNA POLYMERASE, TRANSFERASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.FERRER-ORTA,N.VERDAGUER,R.PEREZ-LUQUE REVDAT 2 20-MAR-24 3KMS 1 REMARK SEQADV REVDAT 1 07-JUL-10 3KMS 0 JRNL AUTH C.FERRER-ORTA,M.SIERRA,R.AGUDO,I.DE LA HIGUERA,A.ARIAS, JRNL AUTH 2 R.PEREZ-LUQUE,C.ESCARMIS,E.DOMINGO,N.VERDAGUER JRNL TITL STRUCTURE OF FOOT-AND-MOUTH DISEASE VIRUS MUTANT POLYMERASES JRNL TITL 2 WITH REDUCED SENSITIVITY TO RIBAVIRIN JRNL REF J.VIROL. V. 84 6188 2010 JRNL REFN ISSN 0022-538X JRNL PMID 20392853 JRNL DOI 10.1128/JVI.02420-09 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24756 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.238 REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1320 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1773 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.31 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3731 REMARK 3 NUCLEIC ACID ATOMS : 251 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.25000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.38000 REMARK 3 B12 (A**2) : -0.13000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.365 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.241 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.189 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.527 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4101 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5614 ; 0.858 ; 2.028 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 4.511 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;31.782 ;23.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 624 ;13.411 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.134 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3063 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1768 ; 0.170 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2796 ; 0.291 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.122 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.086 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2432 ; 0.222 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3805 ; 0.391 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1978 ; 0.433 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1809 ; 0.655 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26125 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 15.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57500 REMARK 200 R SYM FOR SHELL (I) : 0.64200 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28% PEG 4000, 0.2M MAGNESIUM ACETATE, REMARK 280 0.1M HEPES PH 7.0, 4% BUTYROLACTONE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.66467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.33233 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.33233 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 66.66467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 42 CG CD CE NZ REMARK 470 ASP A 53 CG OD1 OD2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 135 CG CD OE1 OE2 REMARK 470 GLU A 324 CG CD OE1 OE2 REMARK 470 ARG A 417 CG CD NE CZ NH1 NH2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 A B 903 REMARK 475 U B 904 REMARK 475 G B 905 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 82 O HOH A 599 1.59 REMARK 500 N HIS A 86 O HOH A 599 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 15 -35.33 -134.52 REMARK 500 MET A 16 -71.70 -50.03 REMARK 500 ARG A 17 167.04 65.06 REMARK 500 GLU A 33 45.92 -79.18 REMARK 500 LYS A 126 112.00 29.42 REMARK 500 PHE A 261 40.12 -106.98 REMARK 500 GLU A 286 -117.95 47.73 REMARK 500 ASP A 368 75.02 -65.28 REMARK 500 LYS A 369 161.79 59.93 REMARK 500 LYS A 372 72.75 -66.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 950 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 238 OD2 REMARK 620 2 ASP A 240 OD1 108.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 950 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1U09 RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE REMARK 900 RELATED ID: 1WNE RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA REMARK 900 RELATED ID: 2D7S RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN REMARK 900 COMPLEX WITH VPG PROTEIN REMARK 900 RELATED ID: 2F8E RELATED DB: PDB REMARK 900 FOOT AND MOUTH DISEASE VIRUS RNA-DEPENDENT RNA POLYMERASE IN REMARK 900 COMPLEX WITH URIDYLYLATED VPG PROTEIN REMARK 900 RELATED ID: 2E9Z RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN COMPLEX WITH A REMARK 900 TEMPLATE- PRIMER RNA, ATP AND UTP REMARK 900 RELATED ID: 2E9T RELATED DB: PDB REMARK 900 FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE RNA DEPENDENT IN REMARK 900 COMPLEX WITH A TEMPLATE-PRIMER RNA AND 5F-UTP REMARK 900 RELATED ID: 3KLV RELATED DB: PDB REMARK 900 M296I G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN REMARK 900 COMPLEX WITH A TEMPLATE- PRIMER RNA REMARK 900 RELATED ID: 3KMQ RELATED DB: PDB REMARK 900 G62S MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN REMARK 900 COMPLEX WITH A TEMPLATE- PRIMER RNA, TETRAGONAL STRUCTURE REMARK 900 RELATED ID: 3KNA RELATED DB: PDB REMARK 900 M296I MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN REMARK 900 COMPLEX WITH A TEMPLATE- PRIMER RNA REMARK 900 RELATED ID: 3KOA RELATED DB: PDB REMARK 900 M296I MUTANT OF FOOT-AND-MOUTH DISEASE VIRUS RNA-POLYMERASE IN REMARK 900 COMPLEX WITH A TEMPLATE- PRIMER RNA AND GTP DBREF 3KMS A 1 470 UNP Q9QCE3 Q9QCE3_9PICO 1858 2327 DBREF 3KMS B 903 909 PDB 3KMS 3KMS 903 909 DBREF 3KMS C 916 920 PDB 3KMS 3KMS 916 920 SEQADV 3KMS SER A 62 UNP Q9QCE3 GLY 1919 ENGINEERED MUTATION SEQADV 3KMS ALA A 471 UNP Q9QCE3 EXPRESSION TAG SEQADV 3KMS ALA A 472 UNP Q9QCE3 EXPRESSION TAG SEQADV 3KMS LEU A 473 UNP Q9QCE3 EXPRESSION TAG SEQADV 3KMS GLU A 474 UNP Q9QCE3 EXPRESSION TAG SEQADV 3KMS HIS A 475 UNP Q9QCE3 EXPRESSION TAG SEQADV 3KMS HIS A 476 UNP Q9QCE3 EXPRESSION TAG SEQRES 1 A 476 GLY LEU ILE VAL ASP THR ARG ASP VAL GLU GLU ARG VAL SEQRES 2 A 476 HIS VAL MET ARG LYS THR LYS LEU ALA PRO THR VAL ALA SEQRES 3 A 476 HIS GLY VAL PHE ASN PRO GLU PHE GLY PRO ALA ALA LEU SEQRES 4 A 476 SER ASN LYS ASP PRO ARG LEU ASN GLU GLY VAL VAL LEU SEQRES 5 A 476 ASP GLU VAL ILE PHE SER LYS HIS LYS SER ASP THR LYS SEQRES 6 A 476 MET SER ALA GLU ASP LYS ALA LEU PHE ARG ARG CYS ALA SEQRES 7 A 476 ALA ASP TYR ALA SER ARG LEU HIS SER VAL LEU GLY THR SEQRES 8 A 476 ALA ASN ALA PRO LEU SER ILE TYR GLU ALA ILE LYS GLY SEQRES 9 A 476 VAL ASP GLY LEU ASP ALA MET GLU PRO ASP THR ALA PRO SEQRES 10 A 476 GLY LEU PRO TRP ALA LEU GLN GLY LYS ARG ARG GLY ALA SEQRES 11 A 476 LEU ILE ASP PHE GLU ASN GLY THR VAL GLY PRO GLU VAL SEQRES 12 A 476 GLU ALA ALA LEU LYS LEU MET GLU LYS ARG GLU TYR LYS SEQRES 13 A 476 PHE ALA CYS GLN THR PHE LEU LYS ASP GLU ILE ARG PRO SEQRES 14 A 476 MET GLU LYS VAL ARG ALA GLY LYS THR ARG ILE VAL ASP SEQRES 15 A 476 VAL LEU PRO VAL GLU HIS ILE LEU TYR THR ARG MET MET SEQRES 16 A 476 ILE GLY ARG PHE CYS ALA GLN MET HIS SER ASN ASN GLY SEQRES 17 A 476 PRO GLN ILE GLY SER ALA VAL GLY CYS ASN PRO ASP VAL SEQRES 18 A 476 ASP TRP GLN ARG PHE GLY THR HIS PHE ALA GLN TYR ARG SEQRES 19 A 476 ASN VAL TRP ASP VAL ASP TYR SER ALA PHE ASP ALA ASN SEQRES 20 A 476 HIS CYS SER ASP ALA MET ASN ILE MET PHE GLU GLU VAL SEQRES 21 A 476 PHE ARG THR GLU PHE GLY PHE HIS PRO ASN ALA GLU TRP SEQRES 22 A 476 ILE LEU LYS THR LEU VAL ASN THR GLU HIS ALA TYR GLU SEQRES 23 A 476 ASN LYS ARG ILE THR VAL GLU GLY GLY MET PRO SER GLY SEQRES 24 A 476 CYS SER ALA THR SER ILE ILE ASN THR ILE LEU ASN ASN SEQRES 25 A 476 ILE TYR VAL LEU TYR ALA LEU ARG ARG HIS TYR GLU GLY SEQRES 26 A 476 VAL GLU LEU ASP THR TYR THR MET ILE SER TYR GLY ASP SEQRES 27 A 476 ASP ILE VAL VAL ALA SER ASP TYR ASP LEU ASP PHE GLU SEQRES 28 A 476 ALA LEU LYS PRO HIS PHE LYS SER LEU GLY GLN THR ILE SEQRES 29 A 476 THR PRO ALA ASP LYS SER ASP LYS GLY PHE VAL LEU GLY SEQRES 30 A 476 HIS SER ILE THR ASP VAL THR PHE LEU LYS ARG HIS PHE SEQRES 31 A 476 HIS MET ASP TYR GLY THR GLY PHE TYR LYS PRO VAL MET SEQRES 32 A 476 ALA SER LYS THR LEU GLU ALA ILE LEU SER PHE ALA ARG SEQRES 33 A 476 ARG GLY THR ILE GLN GLU LYS LEU ILE SER VAL ALA GLY SEQRES 34 A 476 LEU ALA VAL HIS SER GLY PRO ASP GLU TYR ARG ARG LEU SEQRES 35 A 476 PHE GLU PRO PHE GLN GLY LEU PHE GLU ILE PRO SER TYR SEQRES 36 A 476 ARG SER LEU TYR LEU ARG TRP VAL ASN ALA VAL CYS GLY SEQRES 37 A 476 ASP ALA ALA ALA LEU GLU HIS HIS SEQRES 1 B 7 A U G G G C C SEQRES 1 C 5 G G C C C HET MG A 950 1 HETNAM MG MAGNESIUM ION FORMUL 4 MG MG 2+ FORMUL 5 HOH *68(H2 O) HELIX 1 1 ALA A 26 ASN A 31 1 6 HELIX 2 2 VAL A 51 PHE A 57 1 7 HELIX 3 3 SER A 58 HIS A 60 5 3 HELIX 4 4 SER A 67 GLY A 90 1 24 HELIX 5 5 SER A 97 GLY A 104 1 8 HELIX 6 6 PRO A 120 GLN A 124 5 5 HELIX 7 7 ARG A 127 LEU A 131 1 5 HELIX 8 8 GLY A 140 LYS A 152 1 13 HELIX 9 9 MET A 170 ALA A 175 1 6 HELIX 10 10 PRO A 185 ASN A 206 1 22 HELIX 11 11 ASN A 218 ALA A 231 1 14 HELIX 12 12 CYS A 249 PHE A 261 1 13 HELIX 13 13 ARG A 262 GLY A 266 5 5 HELIX 14 14 PRO A 269 THR A 277 1 9 HELIX 15 15 ALA A 302 TYR A 323 1 22 HELIX 16 16 GLU A 327 TYR A 331 5 5 HELIX 17 17 ASP A 349 SER A 359 1 11 HELIX 18 18 ALA A 404 SER A 413 1 10 HELIX 19 19 THR A 419 VAL A 432 1 14 HELIX 20 20 GLY A 435 GLU A 444 1 10 HELIX 21 21 PRO A 445 GLN A 447 5 3 HELIX 22 22 SER A 454 CYS A 467 1 14 HELIX 23 23 CYS A 467 GLU A 474 1 8 SHEET 1 A 4 LEU A 2 VAL A 13 0 SHEET 2 A 4 ASN A 280 GLU A 293 -1 O ARG A 289 N ARG A 7 SHEET 3 A 4 CYS A 159 LEU A 163 1 N CYS A 159 O GLU A 282 SHEET 4 A 4 ILE A 180 VAL A 183 -1 O VAL A 183 N GLN A 160 SHEET 1 B 2 LEU A 21 PRO A 23 0 SHEET 2 B 2 PHE A 414 ARG A 416 -1 O ALA A 415 N ALA A 22 SHEET 1 C 2 PHE A 34 PRO A 36 0 SHEET 2 C 2 ILE A 167 PRO A 169 -1 O ARG A 168 N GLY A 35 SHEET 1 D 2 ILE A 132 ASP A 133 0 SHEET 2 D 2 THR A 138 VAL A 139 -1 O THR A 138 N ASP A 133 SHEET 1 E 4 THR A 332 TYR A 336 0 SHEET 2 E 4 ASP A 339 SER A 344 -1 O ALA A 343 N THR A 332 SHEET 3 E 4 ASN A 235 TYR A 241 -1 N TRP A 237 O VAL A 342 SHEET 4 E 4 ILE A 364 PRO A 366 -1 O THR A 365 N ASP A 240 SHEET 1 F 3 THR A 384 PHE A 385 0 SHEET 2 F 3 ARG A 388 MET A 392 -1 O ARG A 388 N PHE A 385 SHEET 3 F 3 TYR A 399 VAL A 402 -1 O VAL A 402 N HIS A 389 LINK OD2 ASP A 238 MG MG A 950 1555 1555 2.38 LINK OD1 ASP A 240 MG MG A 950 1555 1555 2.85 CISPEP 1 LEU A 119 PRO A 120 0 1.53 SITE 1 AC1 2 ASP A 238 ASP A 240 CRYST1 93.951 93.951 99.997 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010644 0.006145 0.000000 0.00000 SCALE2 0.000000 0.012290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010000 0.00000 TER 3732 HIS A 476 TER 3881 C B 909 TER 3985 C C 920 HETATM 3986 MG MG A 950 28.501 28.716 16.233 1.00 67.35 MG HETATM 3987 O HOH A 500 25.589 38.469 15.431 1.00 61.65 O HETATM 3988 O HOH A 501 45.438 13.522 23.012 1.00 47.45 O HETATM 3989 O HOH A 504 26.215 20.904 10.927 1.00 53.14 O HETATM 3990 O HOH A 505 26.619 13.044 1.428 1.00 70.40 O HETATM 3991 O HOH A 506 2.661 14.448 9.003 1.00 62.49 O HETATM 3992 O HOH A 508 40.280 7.747 25.354 1.00 51.14 O HETATM 3993 O HOH A 509 1.391 27.739 16.392 1.00 49.00 O HETATM 3994 O HOH A 510 8.347 17.869 46.496 1.00 56.01 O HETATM 3995 O HOH A 512 1.059 19.562 25.796 1.00 47.63 O HETATM 3996 O HOH A 513 5.830 33.092 51.517 1.00 55.86 O HETATM 3997 O HOH A 514 23.401 40.750 27.466 1.00 57.05 O HETATM 3998 O HOH A 515 -5.224 22.310 38.800 1.00 49.63 O HETATM 3999 O HOH A 519 27.145 8.392 36.835 1.00 29.91 O HETATM 4000 O HOH A 520 29.621 16.277 45.442 1.00 41.78 O HETATM 4001 O HOH A 521 26.563 44.962 19.380 1.00 29.87 O HETATM 4002 O HOH A 522 26.215 18.020 48.887 1.00 70.70 O HETATM 4003 O HOH A 523 22.654 11.290 20.059 1.00 43.23 O HETATM 4004 O HOH A 524 29.464 9.472 37.636 1.00 26.53 O HETATM 4005 O HOH A 525 24.592 18.381 41.575 1.00 33.21 O HETATM 4006 O HOH A 530 6.257 24.205 27.264 1.00 56.19 O HETATM 4007 O HOH A 531 11.817 37.805 16.593 1.00 42.92 O HETATM 4008 O HOH A 534 12.046 25.903 18.943 1.00 55.52 O HETATM 4009 O HOH A 537 16.506 9.880 39.341 1.00 34.58 O HETATM 4010 O HOH A 538 24.788 26.559 33.580 1.00 33.58 O HETATM 4011 O HOH A 541 7.904 52.243 13.767 1.00 65.16 O HETATM 4012 O HOH A 552 33.513 15.878 45.073 1.00 65.29 O HETATM 4013 O HOH A 557 -6.933 23.257 20.062 1.00 70.67 O HETATM 4014 O HOH A 558 24.578 46.766 27.603 1.00 34.45 O HETATM 4015 O HOH A 563 23.619 25.679 47.663 1.00 62.04 O HETATM 4016 O HOH A 566 12.419 62.376 12.171 1.00 63.30 O HETATM 4017 O HOH A 568 29.458 7.417 42.359 1.00 47.66 O HETATM 4018 O HOH A 574 -5.919 11.307 37.969 1.00 67.86 O HETATM 4019 O HOH A 576 23.571 11.341 -0.518 1.00 69.52 O HETATM 4020 O HOH A 579 34.693 21.542 30.178 1.00 48.75 O HETATM 4021 O HOH A 580 6.528 50.133 24.525 1.00 51.27 O HETATM 4022 O HOH A 588 -5.941 37.911 39.503 1.00 58.49 O HETATM 4023 O HOH A 595 26.732 34.894 35.522 1.00 35.74 O HETATM 4024 O HOH A 599 28.824 15.590 38.051 1.00 54.08 O HETATM 4025 O HOH A 604 25.606 42.907 22.041 1.00 32.85 O HETATM 4026 O HOH A 605 9.218 19.316 31.579 1.00 46.37 O HETATM 4027 O HOH A 606 24.497 48.888 29.021 1.00 26.36 O HETATM 4028 O HOH A 607 24.356 43.035 25.838 1.00 39.69 O HETATM 4029 O HOH A 608 25.917 24.924 17.166 1.00 42.93 O HETATM 4030 O HOH A 609 -9.617 25.289 38.399 1.00 94.82 O HETATM 4031 O HOH A 613 -1.785 30.251 19.869 1.00 73.03 O HETATM 4032 O HOH A 615 19.216 10.150 15.816 1.00 40.39 O HETATM 4033 O HOH A 620 32.753 13.289 45.276 1.00 64.27 O HETATM 4034 O HOH A 628 30.211 1.770 30.537 1.00 44.64 O HETATM 4035 O HOH A 629 24.237 11.419 2.113 1.00 64.64 O HETATM 4036 O HOH A 631 19.316 22.757 49.106 1.00 52.35 O HETATM 4037 O HOH A 635 31.393 13.204 41.967 1.00 74.21 O HETATM 4038 O HOH A 636 14.563 59.664 11.391 1.00 68.92 O HETATM 4039 O HOH A 641 -6.163 28.155 41.560 1.00 75.22 O HETATM 4040 O HOH A 643 28.043 14.353 48.886 1.00 68.73 O HETATM 4041 O HOH A 644 24.922 41.363 23.977 1.00 34.75 O HETATM 4042 O HOH A 646 -7.835 23.530 39.391 1.00 70.72 O HETATM 4043 O HOH A 656 18.118 20.438 49.631 1.00 47.57 O HETATM 4044 O HOH A 658 1.712 42.235 40.571 1.00 68.10 O HETATM 4045 O HOH A 659 13.908 57.701 9.046 1.00 72.77 O HETATM 4046 O HOH B 507 7.232 28.001 32.776 1.00 50.50 O HETATM 4047 O HOH B 516 14.406 44.362 40.323 1.00 57.52 O HETATM 4048 O HOH B 544 14.993 25.506 28.660 1.00 43.86 O HETATM 4049 O HOH B 594 17.190 42.167 38.825 1.00 66.25 O HETATM 4050 O HOH B 619 21.927 33.849 29.403 1.00 54.64 O HETATM 4051 O HOH C 517 8.081 43.189 19.803 1.00 54.90 O HETATM 4052 O HOH C 540 9.071 42.058 32.328 1.00 75.49 O HETATM 4053 O HOH C 584 18.213 24.460 23.948 1.00 44.15 O HETATM 4054 O HOH C 589 17.639 37.524 14.178 1.00 51.33 O CONECT 1840 3986 CONECT 1854 3986 CONECT 3986 1840 1854 MASTER 356 0 1 23 17 0 1 6 4051 3 3 39 END