data_3KOG # _entry.id 3KOG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KOG pdb_00003kog 10.2210/pdb3kog/pdb RCSB RCSB056246 ? ? WWPDB D_1000056246 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 393242 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3KOG _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-11-13 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482 at 1.85 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3KOG _cell.length_a 66.796 _cell.length_b 70.337 _cell.length_c 104.100 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KOG _symmetry.Int_Tables_number 24 _symmetry.space_group_name_H-M 'I 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative pore-forming toxin' 27777.172 1 ? ? ? ? 2 non-polymer syn 'ACETATE ION' 59.044 3 ? ? ? ? 3 non-polymer syn GLYCEROL 92.094 2 ? ? ? ? 4 non-polymer syn '(4R)-2-METHYLPENTANE-2,4-DIOL' 118.174 2 ? ? ? ? 5 water nat water 18.015 169 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GSCEKENIGIEVTPVNAKFIITPVVIDATTGTDVTQSAEISFSKGNGTYEGTPELASESININAKYKG(MSE)TGSASVT IPALKAGQFGAKEVTIILSENFFAQEESSNSQIETTKHSGFKNNTSDYWYYITVTYTKKEGSEVIKNDYEGDDSEIKNII DAYNKGVREDKVTLNDVQVLAHSRFSVFVDY(MSE)KTTSVYQIIEKSPKRDGNPVASFTVDSYNTIVSPKNEQIPGHGH APSHGHGHGHGDDSNAGGGIIIAD ; _entity_poly.pdbx_seq_one_letter_code_can ;GSCEKENIGIEVTPVNAKFIITPVVIDATTGTDVTQSAEISFSKGNGTYEGTPELASESININAKYKGMTGSASVTIPAL KAGQFGAKEVTIILSENFFAQEESSNSQIETTKHSGFKNNTSDYWYYITVTYTKKEGSEVIKNDYEGDDSEIKNIIDAYN KGVREDKVTLNDVQVLAHSRFSVFVDYMKTTSVYQIIEKSPKRDGNPVASFTVDSYNTIVSPKNEQIPGHGHAPSHGHGH GHGDDSNAGGGIIIAD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 393242 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 CYS n 1 4 GLU n 1 5 LYS n 1 6 GLU n 1 7 ASN n 1 8 ILE n 1 9 GLY n 1 10 ILE n 1 11 GLU n 1 12 VAL n 1 13 THR n 1 14 PRO n 1 15 VAL n 1 16 ASN n 1 17 ALA n 1 18 LYS n 1 19 PHE n 1 20 ILE n 1 21 ILE n 1 22 THR n 1 23 PRO n 1 24 VAL n 1 25 VAL n 1 26 ILE n 1 27 ASP n 1 28 ALA n 1 29 THR n 1 30 THR n 1 31 GLY n 1 32 THR n 1 33 ASP n 1 34 VAL n 1 35 THR n 1 36 GLN n 1 37 SER n 1 38 ALA n 1 39 GLU n 1 40 ILE n 1 41 SER n 1 42 PHE n 1 43 SER n 1 44 LYS n 1 45 GLY n 1 46 ASN n 1 47 GLY n 1 48 THR n 1 49 TYR n 1 50 GLU n 1 51 GLY n 1 52 THR n 1 53 PRO n 1 54 GLU n 1 55 LEU n 1 56 ALA n 1 57 SER n 1 58 GLU n 1 59 SER n 1 60 ILE n 1 61 ASN n 1 62 ILE n 1 63 ASN n 1 64 ALA n 1 65 LYS n 1 66 TYR n 1 67 LYS n 1 68 GLY n 1 69 MSE n 1 70 THR n 1 71 GLY n 1 72 SER n 1 73 ALA n 1 74 SER n 1 75 VAL n 1 76 THR n 1 77 ILE n 1 78 PRO n 1 79 ALA n 1 80 LEU n 1 81 LYS n 1 82 ALA n 1 83 GLY n 1 84 GLN n 1 85 PHE n 1 86 GLY n 1 87 ALA n 1 88 LYS n 1 89 GLU n 1 90 VAL n 1 91 THR n 1 92 ILE n 1 93 ILE n 1 94 LEU n 1 95 SER n 1 96 GLU n 1 97 ASN n 1 98 PHE n 1 99 PHE n 1 100 ALA n 1 101 GLN n 1 102 GLU n 1 103 GLU n 1 104 SER n 1 105 SER n 1 106 ASN n 1 107 SER n 1 108 GLN n 1 109 ILE n 1 110 GLU n 1 111 THR n 1 112 THR n 1 113 LYS n 1 114 HIS n 1 115 SER n 1 116 GLY n 1 117 PHE n 1 118 LYS n 1 119 ASN n 1 120 ASN n 1 121 THR n 1 122 SER n 1 123 ASP n 1 124 TYR n 1 125 TRP n 1 126 TYR n 1 127 TYR n 1 128 ILE n 1 129 THR n 1 130 VAL n 1 131 THR n 1 132 TYR n 1 133 THR n 1 134 LYS n 1 135 LYS n 1 136 GLU n 1 137 GLY n 1 138 SER n 1 139 GLU n 1 140 VAL n 1 141 ILE n 1 142 LYS n 1 143 ASN n 1 144 ASP n 1 145 TYR n 1 146 GLU n 1 147 GLY n 1 148 ASP n 1 149 ASP n 1 150 SER n 1 151 GLU n 1 152 ILE n 1 153 LYS n 1 154 ASN n 1 155 ILE n 1 156 ILE n 1 157 ASP n 1 158 ALA n 1 159 TYR n 1 160 ASN n 1 161 LYS n 1 162 GLY n 1 163 VAL n 1 164 ARG n 1 165 GLU n 1 166 ASP n 1 167 LYS n 1 168 VAL n 1 169 THR n 1 170 LEU n 1 171 ASN n 1 172 ASP n 1 173 VAL n 1 174 GLN n 1 175 VAL n 1 176 LEU n 1 177 ALA n 1 178 HIS n 1 179 SER n 1 180 ARG n 1 181 PHE n 1 182 SER n 1 183 VAL n 1 184 PHE n 1 185 VAL n 1 186 ASP n 1 187 TYR n 1 188 MSE n 1 189 LYS n 1 190 THR n 1 191 THR n 1 192 SER n 1 193 VAL n 1 194 TYR n 1 195 GLN n 1 196 ILE n 1 197 ILE n 1 198 GLU n 1 199 LYS n 1 200 SER n 1 201 PRO n 1 202 LYS n 1 203 ARG n 1 204 ASP n 1 205 GLY n 1 206 ASN n 1 207 PRO n 1 208 VAL n 1 209 ALA n 1 210 SER n 1 211 PHE n 1 212 THR n 1 213 VAL n 1 214 ASP n 1 215 SER n 1 216 TYR n 1 217 ASN n 1 218 THR n 1 219 ILE n 1 220 VAL n 1 221 SER n 1 222 PRO n 1 223 LYS n 1 224 ASN n 1 225 GLU n 1 226 GLN n 1 227 ILE n 1 228 PRO n 1 229 GLY n 1 230 HIS n 1 231 GLY n 1 232 HIS n 1 233 ALA n 1 234 PRO n 1 235 SER n 1 236 HIS n 1 237 GLY n 1 238 HIS n 1 239 GLY n 1 240 HIS n 1 241 GLY n 1 242 HIS n 1 243 GLY n 1 244 ASP n 1 245 ASP n 1 246 SER n 1 247 ASN n 1 248 ALA n 1 249 GLY n 1 250 GLY n 1 251 GLY n 1 252 ILE n 1 253 ILE n 1 254 ILE n 1 255 ALA n 1 256 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BVU_4064 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8482 / DSM 1447 / NCTC 11154' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides vulgatus ATCC 8482' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 435590 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A6L7K2_BACV8 _struct_ref.pdbx_db_accession A6L7K2 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SCEKENIGIEVTPVNAKFIITPVVIDATTGTDVTQSAEISFSKGNGTYEGTPELASESININAKYKGMTGSASVTIPALK AGQFGAKEVTIILSENFFAQEESSNSQIETTKHSGFKNNTSDYWYYITVTYTKKEGSEVIKNDYEGDDSEIKNIIDAYNK GVREDKVTLNDVQVLAHSRFSVFVDYMKTTSVYQIIEKSPKRDGNPVASFTVDSYNTIVSPKNEQIPGHGHAPSHGHGHG HGDDSNAGGGIIIAD ; _struct_ref.pdbx_align_begin 28 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KOG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 256 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A6L7K2 _struct_ref_seq.db_align_beg 28 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 282 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 28 _struct_ref_seq.pdbx_auth_seq_align_end 282 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3KOG _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A6L7K2 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MRD non-polymer . '(4R)-2-METHYLPENTANE-2,4-DIOL' ? 'C6 H14 O2' 118.174 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3KOG # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.20 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.11 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.43 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;31.6000% 2-methyl-2,4-pentanediol, 0.2000M sodium chloride, 0.1M sodium acetate pH 4.43, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat mirror (vertical focusing)' _diffrn_detector.pdbx_collection_date 2009-06-10 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.85503 1.0 2 0.97926 1.0 3 0.97845 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.85503,0.97926,0.97845 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3KOG _reflns.d_resolution_high 1.85 _reflns.d_resolution_low 29.814 _reflns.number_obs 21313 _reflns.pdbx_Rmerge_I_obs 0.091 _reflns.pdbx_netI_over_sigmaI 10.200 _reflns.pdbx_Rsym_value 0.091 _reflns.pdbx_redundancy 4.100 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 21.528 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.85 1.90 ? 6377 ? 0.726 1.0 0.726 ? 4.10 ? 1549 100.00 1 1 1.90 1.95 ? 6196 ? 0.565 1.0 0.565 ? 4.10 ? 1507 100.00 2 1 1.95 2.01 ? 6068 ? 0.439 1.7 0.439 ? 4.10 ? 1475 100.00 3 1 2.01 2.07 ? 5914 ? 0.340 2.1 0.340 ? 4.10 ? 1437 100.00 4 1 2.07 2.14 ? 5672 ? 0.294 2.5 0.294 ? 4.10 ? 1378 100.00 5 1 2.14 2.21 ? 5591 ? 0.262 2.8 0.262 ? 4.10 ? 1355 100.00 6 1 2.21 2.29 ? 5376 ? 0.220 3.3 0.220 ? 4.10 ? 1309 100.00 7 1 2.29 2.39 ? 5139 ? 0.189 3.9 0.189 ? 4.10 ? 1246 100.00 8 1 2.39 2.49 ? 4928 ? 0.167 4.4 0.167 ? 4.10 ? 1201 100.00 9 1 2.49 2.62 ? 4762 ? 0.142 5.0 0.142 ? 4.10 ? 1163 100.00 10 1 2.62 2.76 ? 4495 ? 0.115 6.2 0.115 ? 4.10 ? 1098 100.00 11 1 2.76 2.93 ? 4235 ? 0.097 7.1 0.097 ? 4.10 ? 1035 100.00 12 1 2.93 3.13 ? 4029 ? 0.081 8.1 0.081 ? 4.10 ? 987 100.00 13 1 3.13 3.38 ? 3777 ? 0.067 9.5 0.067 ? 4.10 ? 928 100.00 14 1 3.38 3.70 ? 3482 ? 0.053 11.8 0.053 ? 4.10 ? 858 100.00 15 1 3.70 4.14 ? 3093 ? 0.043 13.8 0.043 ? 4.10 ? 763 100.00 16 1 4.14 4.78 ? 2762 ? 0.043 13.7 0.043 ? 4.00 ? 691 100.00 17 1 4.78 5.85 ? 2342 ? 0.046 12.9 0.046 ? 4.00 ? 591 100.00 18 1 5.85 8.27 ? 1787 ? 0.043 14.2 0.043 ? 3.80 ? 467 100.00 19 1 8.27 29.82 ? 963 ? 0.039 15.3 0.039 ? 3.50 ? 275 98.00 20 1 # _refine.entry_id 3KOG _refine.ls_d_res_high 1.850 _refine.ls_d_res_low 29.814 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.990 _refine.ls_number_reflns_obs 21310 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. ACETATE (ACT), GLYCEROL (GOL), AND (4R)-2-METHYL-2,4-PENTANEDIOL (MRD) FROM THE CRYSTALLIZATION/CRYOPROTECTANT SOLUTIONS HAVE BEEN MODELED INTO THE SOLVENT STRUCTURE. 5. TLS GROUPS WERE ASSIGNED WITH THE AID OF THE TLSMD SERVER. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.184 _refine.ls_R_factor_R_work 0.182 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.214 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1095 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.402 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.250 _refine.aniso_B[2][2] -0.070 _refine.aniso_B[3][3] 0.310 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.945 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.142 _refine.pdbx_overall_ESU_R_Free 0.129 _refine.overall_SU_ML 0.088 _refine.overall_SU_B 6.503 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 66.51 _refine.B_iso_min 4.15 _refine.occupancy_max 1.00 _refine.occupancy_min 0.25 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1729 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 40 _refine_hist.number_atoms_solvent 169 _refine_hist.number_atoms_total 1938 _refine_hist.d_res_high 1.850 _refine_hist.d_res_low 29.814 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 1944 0.018 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1260 0.002 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2673 1.621 1.953 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3143 0.930 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 272 6.642 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 91 39.549 26.264 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 325 14.076 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 3 17.383 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 303 0.102 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2222 0.007 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 360 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1204 0.959 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 484 0.277 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 1981 1.697 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 740 2.690 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 669 4.300 4.500 ? ? # _refine_ls_shell.d_res_high 1.850 _refine_ls_shell.d_res_low 1.898 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.000 _refine_ls_shell.number_reflns_R_work 1468 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.271 _refine_ls_shell.R_factor_R_free 0.304 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 73 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1541 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KOG _struct.title 'Crystal structure of Putative pore-forming toxin (YP_001301288.1) from Bacteroides vulgatus ATCC 8482 at 1.85 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;Putative pore-forming toxin, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, MEMBRANE PROTEIN ; _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.entry_id 3KOG # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? I N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 34 ? ALA A 38 ? VAL A 60 ALA A 64 5 ? 5 HELX_P HELX_P2 2 ASP A 149 ? TYR A 159 ? ASP A 175 TYR A 185 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A MSE 69 C ? ? ? 1_555 A THR 70 N ? ? A MSE 95 A THR 96 1_555 ? ? ? ? ? ? ? 1.323 ? ? covale2 covale both ? A MSE 188 C ? ? ? 1_555 A LYS 189 N ? ? A MSE 214 A LYS 215 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 52 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 78 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 53 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 79 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 9.00 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 48 ? GLU A 50 ? THR A 74 GLU A 76 A 2 LYS A 18 ? ASP A 27 ? LYS A 44 ASP A 53 A 3 PHE A 85 ? LEU A 94 ? PHE A 111 LEU A 120 A 4 PRO A 207 ? GLU A 225 ? PRO A 233 GLU A 251 A 5 SER A 179 ? GLU A 198 ? SER A 205 GLU A 224 A 6 LYS A 118 ? ASN A 120 ? LYS A 144 ASN A 146 B 1 PHE A 98 ? HIS A 114 ? PHE A 124 HIS A 140 B 2 SER A 179 ? GLU A 198 ? SER A 205 GLU A 224 B 3 PRO A 207 ? GLU A 225 ? PRO A 233 GLU A 251 B 4 TYR A 126 ? ASN A 143 ? TYR A 152 ASN A 169 B 5 GLY A 162 ? VAL A 175 ? GLY A 188 VAL A 201 C 1 GLU A 39 ? PHE A 42 ? GLU A 65 PHE A 68 C 2 GLU A 58 ? TYR A 66 ? GLU A 84 TYR A 92 C 3 MSE A 69 ? ILE A 77 ? MSE A 95 ILE A 103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O TYR A 49 ? O TYR A 75 N PHE A 19 ? N PHE A 45 A 2 3 N ILE A 26 ? N ILE A 52 O LEU A 94 ? O LEU A 120 A 3 4 N PHE A 85 ? N PHE A 111 O VAL A 220 ? O VAL A 246 A 4 5 O SER A 215 ? O SER A 241 N THR A 190 ? N THR A 216 A 5 6 O SER A 179 ? O SER A 205 N ASN A 120 ? N ASN A 146 B 1 2 N GLN A 101 ? N GLN A 127 O GLN A 195 ? O GLN A 221 B 2 3 N THR A 190 ? N THR A 216 O SER A 215 ? O SER A 241 B 3 4 O TYR A 216 ? O TYR A 242 N GLY A 137 ? N GLY A 163 B 4 5 N GLU A 136 ? N GLU A 162 O ARG A 164 ? O ARG A 190 C 1 2 N SER A 41 ? N SER A 67 O ASN A 63 ? O ASN A 89 C 2 3 N ILE A 62 ? N ILE A 88 O ALA A 73 ? O ALA A 99 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ACT 1 ? 2 'BINDING SITE FOR RESIDUE ACT A 1' AC2 Software A ACT 2 ? 1 'BINDING SITE FOR RESIDUE ACT A 2' AC3 Software A GOL 4 ? 8 'BINDING SITE FOR RESIDUE GOL A 4' AC4 Software A GOL 5 ? 7 'BINDING SITE FOR RESIDUE GOL A 5' AC5 Software A MRD 6 ? 3 'BINDING SITE FOR RESIDUE MRD A 6' AC6 Software A MRD 7 ? 5 'BINDING SITE FOR RESIDUE MRD A 7' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 HOH I . ? HOH A 390 . ? 1_555 ? 2 AC1 2 HOH I . ? HOH A 391 . ? 1_555 ? 3 AC2 1 SER A 104 ? SER A 130 . ? 1_555 ? 4 AC3 8 HOH I . ? HOH A 13 . ? 1_555 ? 5 AC3 8 GLU A 89 ? GLU A 115 . ? 1_555 ? 6 AC3 8 VAL A 90 ? VAL A 116 . ? 1_555 ? 7 AC3 8 THR A 91 ? THR A 117 . ? 1_555 ? 8 AC3 8 SER A 138 ? SER A 164 . ? 1_555 ? 9 AC3 8 TYR A 159 ? TYR A 185 . ? 1_555 ? 10 AC3 8 HOH I . ? HOH A 311 . ? 1_555 ? 11 AC3 8 HOH I . ? HOH A 410 . ? 1_555 ? 12 AC4 7 HOH I . ? HOH A 25 . ? 1_555 ? 13 AC4 7 ASP A 33 ? ASP A 59 . ? 1_555 ? 14 AC4 7 VAL A 34 ? VAL A 60 . ? 1_555 ? 15 AC4 7 THR A 35 ? THR A 61 . ? 1_555 ? 16 AC4 7 GLN A 36 ? GLN A 62 . ? 1_555 ? 17 AC4 7 HOH I . ? HOH A 319 . ? 6_655 ? 18 AC4 7 HOH I . ? HOH A 328 . ? 1_555 ? 19 AC5 3 GLN A 84 ? GLN A 110 . ? 1_555 ? 20 AC5 3 ASP A 186 ? ASP A 212 . ? 1_555 ? 21 AC5 3 HOH I . ? HOH A 305 . ? 1_555 ? 22 AC6 5 SER A 57 ? SER A 83 . ? 1_555 ? 23 AC6 5 SER A 57 ? SER A 83 . ? 7_556 ? 24 AC6 5 SER A 59 ? SER A 85 . ? 7_556 ? 25 AC6 5 SER A 59 ? SER A 85 . ? 1_555 ? 26 AC6 5 THR A 76 ? THR A 102 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KOG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 3KOG _atom_sites.fract_transf_matrix[1][1] 0.014971 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014217 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009606 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 SER 2 28 ? ? ? A . n A 1 3 CYS 3 29 ? ? ? A . n A 1 4 GLU 4 30 ? ? ? A . n A 1 5 LYS 5 31 ? ? ? A . n A 1 6 GLU 6 32 ? ? ? A . n A 1 7 ASN 7 33 ? ? ? A . n A 1 8 ILE 8 34 ? ? ? A . n A 1 9 GLY 9 35 ? ? ? A . n A 1 10 ILE 10 36 ? ? ? A . n A 1 11 GLU 11 37 ? ? ? A . n A 1 12 VAL 12 38 ? ? ? A . n A 1 13 THR 13 39 39 THR THR A . n A 1 14 PRO 14 40 40 PRO PRO A . n A 1 15 VAL 15 41 41 VAL VAL A . n A 1 16 ASN 16 42 42 ASN ASN A . n A 1 17 ALA 17 43 43 ALA ALA A . n A 1 18 LYS 18 44 44 LYS LYS A . n A 1 19 PHE 19 45 45 PHE PHE A . n A 1 20 ILE 20 46 46 ILE ILE A . n A 1 21 ILE 21 47 47 ILE ILE A . n A 1 22 THR 22 48 48 THR THR A . n A 1 23 PRO 23 49 49 PRO PRO A . n A 1 24 VAL 24 50 50 VAL VAL A . n A 1 25 VAL 25 51 51 VAL VAL A . n A 1 26 ILE 26 52 52 ILE ILE A . n A 1 27 ASP 27 53 53 ASP ASP A . n A 1 28 ALA 28 54 54 ALA ALA A . n A 1 29 THR 29 55 55 THR THR A . n A 1 30 THR 30 56 56 THR THR A . n A 1 31 GLY 31 57 57 GLY GLY A . n A 1 32 THR 32 58 58 THR THR A . n A 1 33 ASP 33 59 59 ASP ASP A . n A 1 34 VAL 34 60 60 VAL VAL A . n A 1 35 THR 35 61 61 THR THR A . n A 1 36 GLN 36 62 62 GLN GLN A . n A 1 37 SER 37 63 63 SER SER A . n A 1 38 ALA 38 64 64 ALA ALA A . n A 1 39 GLU 39 65 65 GLU GLU A . n A 1 40 ILE 40 66 66 ILE ILE A . n A 1 41 SER 41 67 67 SER SER A . n A 1 42 PHE 42 68 68 PHE PHE A . n A 1 43 SER 43 69 69 SER SER A . n A 1 44 LYS 44 70 70 LYS LYS A . n A 1 45 GLY 45 71 71 GLY GLY A . n A 1 46 ASN 46 72 72 ASN ASN A . n A 1 47 GLY 47 73 73 GLY GLY A . n A 1 48 THR 48 74 74 THR THR A . n A 1 49 TYR 49 75 75 TYR TYR A . n A 1 50 GLU 50 76 76 GLU GLU A . n A 1 51 GLY 51 77 77 GLY GLY A . n A 1 52 THR 52 78 78 THR THR A . n A 1 53 PRO 53 79 79 PRO PRO A . n A 1 54 GLU 54 80 80 GLU GLU A . n A 1 55 LEU 55 81 81 LEU LEU A . n A 1 56 ALA 56 82 82 ALA ALA A . n A 1 57 SER 57 83 83 SER SER A . n A 1 58 GLU 58 84 84 GLU GLU A . n A 1 59 SER 59 85 85 SER SER A . n A 1 60 ILE 60 86 86 ILE ILE A . n A 1 61 ASN 61 87 87 ASN ASN A . n A 1 62 ILE 62 88 88 ILE ILE A . n A 1 63 ASN 63 89 89 ASN ASN A . n A 1 64 ALA 64 90 90 ALA ALA A . n A 1 65 LYS 65 91 91 LYS LYS A . n A 1 66 TYR 66 92 92 TYR TYR A . n A 1 67 LYS 67 93 93 LYS LYS A . n A 1 68 GLY 68 94 94 GLY GLY A . n A 1 69 MSE 69 95 95 MSE MSE A . n A 1 70 THR 70 96 96 THR THR A . n A 1 71 GLY 71 97 97 GLY GLY A . n A 1 72 SER 72 98 98 SER SER A . n A 1 73 ALA 73 99 99 ALA ALA A . n A 1 74 SER 74 100 100 SER SER A . n A 1 75 VAL 75 101 101 VAL VAL A . n A 1 76 THR 76 102 102 THR THR A . n A 1 77 ILE 77 103 103 ILE ILE A . n A 1 78 PRO 78 104 104 PRO PRO A . n A 1 79 ALA 79 105 105 ALA ALA A . n A 1 80 LEU 80 106 106 LEU LEU A . n A 1 81 LYS 81 107 107 LYS LYS A . n A 1 82 ALA 82 108 108 ALA ALA A . n A 1 83 GLY 83 109 109 GLY GLY A . n A 1 84 GLN 84 110 110 GLN GLN A . n A 1 85 PHE 85 111 111 PHE PHE A . n A 1 86 GLY 86 112 112 GLY GLY A . n A 1 87 ALA 87 113 113 ALA ALA A . n A 1 88 LYS 88 114 114 LYS LYS A . n A 1 89 GLU 89 115 115 GLU GLU A . n A 1 90 VAL 90 116 116 VAL VAL A . n A 1 91 THR 91 117 117 THR THR A . n A 1 92 ILE 92 118 118 ILE ILE A . n A 1 93 ILE 93 119 119 ILE ILE A . n A 1 94 LEU 94 120 120 LEU LEU A . n A 1 95 SER 95 121 121 SER SER A . n A 1 96 GLU 96 122 122 GLU GLU A . n A 1 97 ASN 97 123 123 ASN ASN A . n A 1 98 PHE 98 124 124 PHE PHE A . n A 1 99 PHE 99 125 125 PHE PHE A . n A 1 100 ALA 100 126 126 ALA ALA A . n A 1 101 GLN 101 127 127 GLN GLN A . n A 1 102 GLU 102 128 128 GLU GLU A . n A 1 103 GLU 103 129 129 GLU GLU A . n A 1 104 SER 104 130 130 SER SER A . n A 1 105 SER 105 131 131 SER SER A . n A 1 106 ASN 106 132 132 ASN ASN A . n A 1 107 SER 107 133 133 SER SER A . n A 1 108 GLN 108 134 134 GLN GLN A . n A 1 109 ILE 109 135 135 ILE ILE A . n A 1 110 GLU 110 136 136 GLU GLU A . n A 1 111 THR 111 137 137 THR THR A . n A 1 112 THR 112 138 138 THR THR A . n A 1 113 LYS 113 139 139 LYS LYS A . n A 1 114 HIS 114 140 140 HIS HIS A . n A 1 115 SER 115 141 141 SER SER A . n A 1 116 GLY 116 142 142 GLY GLY A . n A 1 117 PHE 117 143 143 PHE PHE A . n A 1 118 LYS 118 144 144 LYS LYS A . n A 1 119 ASN 119 145 145 ASN ASN A . n A 1 120 ASN 120 146 146 ASN ASN A . n A 1 121 THR 121 147 147 THR THR A . n A 1 122 SER 122 148 148 SER SER A . n A 1 123 ASP 123 149 149 ASP ASP A . n A 1 124 TYR 124 150 150 TYR TYR A . n A 1 125 TRP 125 151 151 TRP TRP A . n A 1 126 TYR 126 152 152 TYR TYR A . n A 1 127 TYR 127 153 153 TYR TYR A . n A 1 128 ILE 128 154 154 ILE ILE A . n A 1 129 THR 129 155 155 THR THR A . n A 1 130 VAL 130 156 156 VAL VAL A . n A 1 131 THR 131 157 157 THR THR A . n A 1 132 TYR 132 158 158 TYR TYR A . n A 1 133 THR 133 159 159 THR THR A . n A 1 134 LYS 134 160 160 LYS LYS A . n A 1 135 LYS 135 161 161 LYS LYS A . n A 1 136 GLU 136 162 162 GLU GLU A . n A 1 137 GLY 137 163 163 GLY GLY A . n A 1 138 SER 138 164 164 SER SER A . n A 1 139 GLU 139 165 165 GLU GLU A . n A 1 140 VAL 140 166 166 VAL VAL A . n A 1 141 ILE 141 167 167 ILE ILE A . n A 1 142 LYS 142 168 168 LYS LYS A . n A 1 143 ASN 143 169 169 ASN ASN A . n A 1 144 ASP 144 170 170 ASP ASP A . n A 1 145 TYR 145 171 171 TYR TYR A . n A 1 146 GLU 146 172 172 GLU GLU A . n A 1 147 GLY 147 173 173 GLY GLY A . n A 1 148 ASP 148 174 174 ASP ASP A . n A 1 149 ASP 149 175 175 ASP ASP A . n A 1 150 SER 150 176 176 SER SER A . n A 1 151 GLU 151 177 177 GLU GLU A . n A 1 152 ILE 152 178 178 ILE ILE A . n A 1 153 LYS 153 179 179 LYS LYS A . n A 1 154 ASN 154 180 180 ASN ASN A . n A 1 155 ILE 155 181 181 ILE ILE A . n A 1 156 ILE 156 182 182 ILE ILE A . n A 1 157 ASP 157 183 183 ASP ASP A . n A 1 158 ALA 158 184 184 ALA ALA A . n A 1 159 TYR 159 185 185 TYR TYR A . n A 1 160 ASN 160 186 186 ASN ASN A . n A 1 161 LYS 161 187 187 LYS LYS A . n A 1 162 GLY 162 188 188 GLY GLY A . n A 1 163 VAL 163 189 189 VAL VAL A . n A 1 164 ARG 164 190 190 ARG ARG A . n A 1 165 GLU 165 191 191 GLU GLU A . n A 1 166 ASP 166 192 192 ASP ASP A . n A 1 167 LYS 167 193 193 LYS LYS A . n A 1 168 VAL 168 194 194 VAL VAL A . n A 1 169 THR 169 195 195 THR THR A . n A 1 170 LEU 170 196 196 LEU LEU A . n A 1 171 ASN 171 197 197 ASN ASN A . n A 1 172 ASP 172 198 198 ASP ASP A . n A 1 173 VAL 173 199 199 VAL VAL A . n A 1 174 GLN 174 200 200 GLN GLN A . n A 1 175 VAL 175 201 201 VAL VAL A . n A 1 176 LEU 176 202 202 LEU LEU A . n A 1 177 ALA 177 203 203 ALA ALA A . n A 1 178 HIS 178 204 204 HIS HIS A . n A 1 179 SER 179 205 205 SER SER A . n A 1 180 ARG 180 206 206 ARG ARG A . n A 1 181 PHE 181 207 207 PHE PHE A . n A 1 182 SER 182 208 208 SER SER A . n A 1 183 VAL 183 209 209 VAL VAL A . n A 1 184 PHE 184 210 210 PHE PHE A . n A 1 185 VAL 185 211 211 VAL VAL A . n A 1 186 ASP 186 212 212 ASP ASP A . n A 1 187 TYR 187 213 213 TYR TYR A . n A 1 188 MSE 188 214 214 MSE MSE A . n A 1 189 LYS 189 215 215 LYS LYS A . n A 1 190 THR 190 216 216 THR THR A . n A 1 191 THR 191 217 217 THR THR A . n A 1 192 SER 192 218 218 SER SER A . n A 1 193 VAL 193 219 219 VAL VAL A . n A 1 194 TYR 194 220 220 TYR TYR A . n A 1 195 GLN 195 221 221 GLN GLN A . n A 1 196 ILE 196 222 222 ILE ILE A . n A 1 197 ILE 197 223 223 ILE ILE A . n A 1 198 GLU 198 224 224 GLU GLU A . n A 1 199 LYS 199 225 225 LYS LYS A . n A 1 200 SER 200 226 226 SER SER A . n A 1 201 PRO 201 227 227 PRO PRO A . n A 1 202 LYS 202 228 ? ? ? A . n A 1 203 ARG 203 229 ? ? ? A . n A 1 204 ASP 204 230 230 ASP ASP A . n A 1 205 GLY 205 231 231 GLY GLY A . n A 1 206 ASN 206 232 232 ASN ASN A . n A 1 207 PRO 207 233 233 PRO PRO A . n A 1 208 VAL 208 234 234 VAL VAL A . n A 1 209 ALA 209 235 235 ALA ALA A . n A 1 210 SER 210 236 236 SER SER A . n A 1 211 PHE 211 237 237 PHE PHE A . n A 1 212 THR 212 238 238 THR THR A . n A 1 213 VAL 213 239 239 VAL VAL A . n A 1 214 ASP 214 240 240 ASP ASP A . n A 1 215 SER 215 241 241 SER SER A . n A 1 216 TYR 216 242 242 TYR TYR A . n A 1 217 ASN 217 243 243 ASN ASN A . n A 1 218 THR 218 244 244 THR THR A . n A 1 219 ILE 219 245 245 ILE ILE A . n A 1 220 VAL 220 246 246 VAL VAL A . n A 1 221 SER 221 247 247 SER SER A . n A 1 222 PRO 222 248 248 PRO PRO A . n A 1 223 LYS 223 249 249 LYS LYS A . n A 1 224 ASN 224 250 250 ASN ASN A . n A 1 225 GLU 225 251 251 GLU GLU A . n A 1 226 GLN 226 252 252 GLN GLN A . n A 1 227 ILE 227 253 253 ILE ILE A . n A 1 228 PRO 228 254 254 PRO PRO A . n A 1 229 GLY 229 255 255 GLY GLY A . n A 1 230 HIS 230 256 256 HIS HIS A . n A 1 231 GLY 231 257 257 GLY GLY A . n A 1 232 HIS 232 258 258 HIS HIS A . n A 1 233 ALA 233 259 259 ALA ALA A . n A 1 234 PRO 234 260 260 PRO PRO A . n A 1 235 SER 235 261 261 SER SER A . n A 1 236 HIS 236 262 262 HIS HIS A . n A 1 237 GLY 237 263 263 GLY GLY A . n A 1 238 HIS 238 264 264 HIS HIS A . n A 1 239 GLY 239 265 265 GLY GLY A . n A 1 240 HIS 240 266 266 HIS HIS A . n A 1 241 GLY 241 267 ? ? ? A . n A 1 242 HIS 242 268 ? ? ? A . n A 1 243 GLY 243 269 ? ? ? A . n A 1 244 ASP 244 270 ? ? ? A . n A 1 245 ASP 245 271 ? ? ? A . n A 1 246 SER 246 272 ? ? ? A . n A 1 247 ASN 247 273 ? ? ? A . n A 1 248 ALA 248 274 ? ? ? A . n A 1 249 GLY 249 275 ? ? ? A . n A 1 250 GLY 250 276 ? ? ? A . n A 1 251 GLY 251 277 ? ? ? A . n A 1 252 ILE 252 278 ? ? ? A . n A 1 253 ILE 253 279 ? ? ? A . n A 1 254 ILE 254 280 ? ? ? A . n A 1 255 ALA 255 281 ? ? ? A . n A 1 256 ASP 256 282 ? ? ? A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT 1 1 1 ACT ACT A . C 2 ACT 1 2 2 ACT ACT A . D 2 ACT 1 3 3 ACT ACT A . E 3 GOL 1 4 4 GOL GOL A . F 3 GOL 1 5 5 GOL GOL A . G 4 MRD 1 6 6 MRD MRD A . H 4 MRD 1 7 7 MRD MRD A . I 5 HOH 1 8 8 HOH HOH A . I 5 HOH 2 9 9 HOH HOH A . I 5 HOH 3 10 10 HOH HOH A . I 5 HOH 4 11 11 HOH HOH A . I 5 HOH 5 12 12 HOH HOH A . I 5 HOH 6 13 13 HOH HOH A . I 5 HOH 7 14 14 HOH HOH A . I 5 HOH 8 15 15 HOH HOH A . I 5 HOH 9 16 16 HOH HOH A . I 5 HOH 10 17 17 HOH HOH A . I 5 HOH 11 18 18 HOH HOH A . I 5 HOH 12 19 19 HOH HOH A . I 5 HOH 13 20 20 HOH HOH A . I 5 HOH 14 21 21 HOH HOH A . I 5 HOH 15 22 22 HOH HOH A . I 5 HOH 16 23 23 HOH HOH A . I 5 HOH 17 24 24 HOH HOH A . I 5 HOH 18 25 25 HOH HOH A . I 5 HOH 19 26 26 HOH HOH A . I 5 HOH 20 283 27 HOH HOH A . I 5 HOH 21 284 28 HOH HOH A . I 5 HOH 22 285 29 HOH HOH A . I 5 HOH 23 286 30 HOH HOH A . I 5 HOH 24 287 31 HOH HOH A . I 5 HOH 25 288 32 HOH HOH A . I 5 HOH 26 289 33 HOH HOH A . I 5 HOH 27 290 34 HOH HOH A . I 5 HOH 28 291 35 HOH HOH A . I 5 HOH 29 292 36 HOH HOH A . I 5 HOH 30 293 37 HOH HOH A . I 5 HOH 31 294 38 HOH HOH A . I 5 HOH 32 295 39 HOH HOH A . I 5 HOH 33 296 40 HOH HOH A . I 5 HOH 34 297 41 HOH HOH A . I 5 HOH 35 298 42 HOH HOH A . I 5 HOH 36 299 43 HOH HOH A . I 5 HOH 37 300 44 HOH HOH A . I 5 HOH 38 301 45 HOH HOH A . I 5 HOH 39 302 46 HOH HOH A . I 5 HOH 40 303 47 HOH HOH A . I 5 HOH 41 304 48 HOH HOH A . I 5 HOH 42 305 49 HOH HOH A . I 5 HOH 43 306 50 HOH HOH A . I 5 HOH 44 307 51 HOH HOH A . I 5 HOH 45 308 52 HOH HOH A . I 5 HOH 46 309 53 HOH HOH A . I 5 HOH 47 310 54 HOH HOH A . I 5 HOH 48 311 55 HOH HOH A . I 5 HOH 49 312 56 HOH HOH A . I 5 HOH 50 313 57 HOH HOH A . I 5 HOH 51 314 58 HOH HOH A . I 5 HOH 52 315 59 HOH HOH A . I 5 HOH 53 316 60 HOH HOH A . I 5 HOH 54 317 61 HOH HOH A . I 5 HOH 55 318 62 HOH HOH A . I 5 HOH 56 319 63 HOH HOH A . I 5 HOH 57 320 64 HOH HOH A . I 5 HOH 58 321 65 HOH HOH A . I 5 HOH 59 322 66 HOH HOH A . I 5 HOH 60 323 67 HOH HOH A . I 5 HOH 61 324 68 HOH HOH A . I 5 HOH 62 325 69 HOH HOH A . I 5 HOH 63 326 70 HOH HOH A . I 5 HOH 64 327 71 HOH HOH A . I 5 HOH 65 328 72 HOH HOH A . I 5 HOH 66 329 73 HOH HOH A . I 5 HOH 67 330 74 HOH HOH A . I 5 HOH 68 331 75 HOH HOH A . I 5 HOH 69 332 76 HOH HOH A . I 5 HOH 70 333 77 HOH HOH A . I 5 HOH 71 334 78 HOH HOH A . I 5 HOH 72 335 79 HOH HOH A . I 5 HOH 73 336 80 HOH HOH A . I 5 HOH 74 337 81 HOH HOH A . I 5 HOH 75 338 82 HOH HOH A . I 5 HOH 76 339 83 HOH HOH A . I 5 HOH 77 340 84 HOH HOH A . I 5 HOH 78 341 85 HOH HOH A . I 5 HOH 79 342 86 HOH HOH A . I 5 HOH 80 343 87 HOH HOH A . I 5 HOH 81 344 88 HOH HOH A . I 5 HOH 82 345 89 HOH HOH A . I 5 HOH 83 346 90 HOH HOH A . I 5 HOH 84 347 91 HOH HOH A . I 5 HOH 85 348 92 HOH HOH A . I 5 HOH 86 349 93 HOH HOH A . I 5 HOH 87 350 94 HOH HOH A . I 5 HOH 88 351 95 HOH HOH A . I 5 HOH 89 352 96 HOH HOH A . I 5 HOH 90 353 97 HOH HOH A . I 5 HOH 91 354 98 HOH HOH A . I 5 HOH 92 355 99 HOH HOH A . I 5 HOH 93 356 100 HOH HOH A . I 5 HOH 94 357 101 HOH HOH A . I 5 HOH 95 358 102 HOH HOH A . I 5 HOH 96 359 103 HOH HOH A . I 5 HOH 97 360 104 HOH HOH A . I 5 HOH 98 361 105 HOH HOH A . I 5 HOH 99 362 106 HOH HOH A . I 5 HOH 100 363 107 HOH HOH A . I 5 HOH 101 364 108 HOH HOH A . I 5 HOH 102 365 109 HOH HOH A . I 5 HOH 103 366 110 HOH HOH A . I 5 HOH 104 367 111 HOH HOH A . I 5 HOH 105 368 112 HOH HOH A . I 5 HOH 106 369 113 HOH HOH A . I 5 HOH 107 370 114 HOH HOH A . I 5 HOH 108 371 115 HOH HOH A . I 5 HOH 109 372 116 HOH HOH A . I 5 HOH 110 373 117 HOH HOH A . I 5 HOH 111 374 118 HOH HOH A . I 5 HOH 112 375 119 HOH HOH A . I 5 HOH 113 376 120 HOH HOH A . I 5 HOH 114 377 121 HOH HOH A . I 5 HOH 115 378 122 HOH HOH A . I 5 HOH 116 379 123 HOH HOH A . I 5 HOH 117 380 124 HOH HOH A . I 5 HOH 118 381 125 HOH HOH A . I 5 HOH 119 382 126 HOH HOH A . I 5 HOH 120 383 127 HOH HOH A . I 5 HOH 121 384 128 HOH HOH A . I 5 HOH 122 385 129 HOH HOH A . I 5 HOH 123 386 130 HOH HOH A . I 5 HOH 124 387 131 HOH HOH A . I 5 HOH 125 388 132 HOH HOH A . I 5 HOH 126 389 133 HOH HOH A . I 5 HOH 127 390 134 HOH HOH A . I 5 HOH 128 391 135 HOH HOH A . I 5 HOH 129 392 136 HOH HOH A . I 5 HOH 130 393 137 HOH HOH A . I 5 HOH 131 394 138 HOH HOH A . I 5 HOH 132 395 139 HOH HOH A . I 5 HOH 133 396 140 HOH HOH A . I 5 HOH 134 397 141 HOH HOH A . I 5 HOH 135 398 142 HOH HOH A . I 5 HOH 136 399 143 HOH HOH A . I 5 HOH 137 400 144 HOH HOH A . I 5 HOH 138 401 145 HOH HOH A . I 5 HOH 139 402 146 HOH HOH A . I 5 HOH 140 403 147 HOH HOH A . I 5 HOH 141 404 148 HOH HOH A . I 5 HOH 142 405 149 HOH HOH A . I 5 HOH 143 406 150 HOH HOH A . I 5 HOH 144 407 151 HOH HOH A . I 5 HOH 145 408 152 HOH HOH A . I 5 HOH 146 409 153 HOH HOH A . I 5 HOH 147 410 154 HOH HOH A . I 5 HOH 148 411 155 HOH HOH A . I 5 HOH 149 412 156 HOH HOH A . I 5 HOH 150 413 157 HOH HOH A . I 5 HOH 151 414 158 HOH HOH A . I 5 HOH 152 415 159 HOH HOH A . I 5 HOH 153 416 160 HOH HOH A . I 5 HOH 154 417 161 HOH HOH A . I 5 HOH 155 418 162 HOH HOH A . I 5 HOH 156 419 163 HOH HOH A . I 5 HOH 157 420 164 HOH HOH A . I 5 HOH 158 421 165 HOH HOH A . I 5 HOH 159 422 166 HOH HOH A . I 5 HOH 160 423 167 HOH HOH A . I 5 HOH 161 424 168 HOH HOH A . I 5 HOH 162 425 169 HOH HOH A . I 5 HOH 163 426 170 HOH HOH A . I 5 HOH 164 427 171 HOH HOH A . I 5 HOH 165 428 172 HOH HOH A . I 5 HOH 166 429 173 HOH HOH A . I 5 HOH 167 430 174 HOH HOH A . I 5 HOH 168 431 175 HOH HOH A . I 5 HOH 169 432 176 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 69 A MSE 95 ? MET SELENOMETHIONINE 2 A MSE 188 A MSE 214 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id MRD _pdbx_struct_special_symmetry.auth_seq_id 7 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id H _pdbx_struct_special_symmetry.label_comp_id MRD _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-01 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' pdbx_struct_special_symmetry 3 4 'Structure model' software 4 4 'Structure model' struct_conn 5 5 'Structure model' database_2 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 29.1910 26.4290 48.5930 0.0384 0.0656 0.0528 -0.0094 0.0137 0.0004 1.4965 1.2485 0.7718 -0.3392 0.2804 0.3460 -0.0912 0.1747 -0.0835 -0.0271 0.0376 -0.1794 -0.0529 -0.0804 -0.0569 'X-RAY DIFFRACTION' 2 ? refined 26.7700 29.9400 38.4470 0.0635 0.1039 0.0501 -0.0047 0.0352 0.0158 3.5387 3.3044 4.7673 2.3669 3.5712 3.4333 -0.0092 0.2816 -0.2725 0.4123 -0.1249 -0.2361 -0.0845 -0.1165 0.3624 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 39 A 145 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 146 A 266 ? . . . . ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0053 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 SCALA 3.2.5 5/04/2004 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 7 # _pdbx_entry_details.entry_id 3KOG _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;SEQUENCE THIS CONSTRUCT (28-282) WAS EXPRESSED WITH THE PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OE1 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 65 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 307 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD2 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASP _pdbx_validate_symm_contact.auth_seq_id_1 170 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 A _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 OE2 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 GLU _pdbx_validate_symm_contact.auth_seq_id_2 172 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 6_665 _pdbx_validate_symm_contact.dist 2.13 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 91 ? CE ? A LYS 65 CE 2 1 Y 1 A LYS 91 ? NZ ? A LYS 65 NZ 3 1 Y 1 A LYS 107 ? CE ? A LYS 81 CE 4 1 Y 1 A LYS 107 ? NZ ? A LYS 81 NZ 5 1 Y 1 A LYS 144 ? CE ? A LYS 118 CE 6 1 Y 1 A LYS 144 ? NZ ? A LYS 118 NZ 7 1 Y 1 A LYS 160 ? NZ ? A LYS 134 NZ 8 1 Y 1 A LYS 193 ? NZ ? A LYS 167 NZ 9 1 Y 1 A ASN 197 ? CG ? A ASN 171 CG 10 1 Y 1 A ASN 197 ? OD1 ? A ASN 171 OD1 11 1 Y 1 A ASN 197 ? ND2 ? A ASN 171 ND2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A SER 28 ? A SER 2 3 1 Y 1 A CYS 29 ? A CYS 3 4 1 Y 1 A GLU 30 ? A GLU 4 5 1 Y 1 A LYS 31 ? A LYS 5 6 1 Y 1 A GLU 32 ? A GLU 6 7 1 Y 1 A ASN 33 ? A ASN 7 8 1 Y 1 A ILE 34 ? A ILE 8 9 1 Y 1 A GLY 35 ? A GLY 9 10 1 Y 1 A ILE 36 ? A ILE 10 11 1 Y 1 A GLU 37 ? A GLU 11 12 1 Y 1 A VAL 38 ? A VAL 12 13 1 Y 1 A LYS 228 ? A LYS 202 14 1 Y 1 A ARG 229 ? A ARG 203 15 1 Y 1 A GLY 267 ? A GLY 241 16 1 Y 1 A HIS 268 ? A HIS 242 17 1 Y 1 A GLY 269 ? A GLY 243 18 1 Y 1 A ASP 270 ? A ASP 244 19 1 Y 1 A ASP 271 ? A ASP 245 20 1 Y 1 A SER 272 ? A SER 246 21 1 Y 1 A ASN 273 ? A ASN 247 22 1 Y 1 A ALA 274 ? A ALA 248 23 1 Y 1 A GLY 275 ? A GLY 249 24 1 Y 1 A GLY 276 ? A GLY 250 25 1 Y 1 A GLY 277 ? A GLY 251 26 1 Y 1 A ILE 278 ? A ILE 252 27 1 Y 1 A ILE 279 ? A ILE 253 28 1 Y 1 A ILE 280 ? A ILE 254 29 1 Y 1 A ALA 281 ? A ALA 255 30 1 Y 1 A ASP 282 ? A ASP 256 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ACETATE ION' ACT 3 GLYCEROL GOL 4 '(4R)-2-METHYLPENTANE-2,4-DIOL' MRD 5 water HOH #