data_3KP5 # _entry.id 3KP5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3KP5 RCSB RCSB056271 WWPDB D_1000056271 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3KP2 . unspecified PDB 3KP3 . unspecified PDB 3KP4 . unspecified PDB 3KP6 . unspecified PDB 3KP7 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KP5 _pdbx_database_status.recvd_initial_deposition_date 2009-11-15 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chang, Y.M.' 1 'Chen, C.K.' 2 'Wang, A.H.' 3 # _citation.id primary _citation.title 'Structural study of TcaR and its complexes with multiple antibiotics from Staphylococcus epidermidis.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 107 _citation.page_first 8617 _citation.page_last 8622 _citation.year 2010 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20421503 _citation.pdbx_database_id_DOI 10.1073/pnas.0913302107 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Chang, Y.M.' 1 primary 'Jeng, W.Y.' 2 primary 'Ko, T.P.' 3 primary 'Yeh, Y.J.' 4 primary 'Chen, C.K.' 5 primary 'Wang, A.H.' 6 # _cell.entry_id 3KP5 _cell.length_a 107.828 _cell.length_b 107.828 _cell.length_c 49.422 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KP5 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Transcriptional regulator TcaR' 17378.195 2 ? ? ? ? 2 non-polymer syn 'KANAMYCIN A' 484.499 2 ? ? ? ? 3 water nat water 18.015 139 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MVRRIEDHISFLEKFINDVNTLTAKLLKDLQTEYGISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAEL VKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEIIDYRIQSYTSKL ; _entity_poly.pdbx_seq_one_letter_code_can ;MVRRIEDHISFLEKFINDVNTLTAKLLKDLQTEYGISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAEL VKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEIIDYRIQSYTSKL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 VAL n 1 3 ARG n 1 4 ARG n 1 5 ILE n 1 6 GLU n 1 7 ASP n 1 8 HIS n 1 9 ILE n 1 10 SER n 1 11 PHE n 1 12 LEU n 1 13 GLU n 1 14 LYS n 1 15 PHE n 1 16 ILE n 1 17 ASN n 1 18 ASP n 1 19 VAL n 1 20 ASN n 1 21 THR n 1 22 LEU n 1 23 THR n 1 24 ALA n 1 25 LYS n 1 26 LEU n 1 27 LEU n 1 28 LYS n 1 29 ASP n 1 30 LEU n 1 31 GLN n 1 32 THR n 1 33 GLU n 1 34 TYR n 1 35 GLY n 1 36 ILE n 1 37 SER n 1 38 ALA n 1 39 GLU n 1 40 GLN n 1 41 SER n 1 42 HIS n 1 43 VAL n 1 44 LEU n 1 45 ASN n 1 46 MET n 1 47 LEU n 1 48 SER n 1 49 ILE n 1 50 GLU n 1 51 ALA n 1 52 LEU n 1 53 THR n 1 54 VAL n 1 55 GLY n 1 56 GLN n 1 57 ILE n 1 58 THR n 1 59 GLU n 1 60 LYS n 1 61 GLN n 1 62 GLY n 1 63 VAL n 1 64 ASN n 1 65 LYS n 1 66 ALA n 1 67 ALA n 1 68 VAL n 1 69 SER n 1 70 ARG n 1 71 ARG n 1 72 VAL n 1 73 LYS n 1 74 LYS n 1 75 LEU n 1 76 LEU n 1 77 ASN n 1 78 ALA n 1 79 GLU n 1 80 LEU n 1 81 VAL n 1 82 LYS n 1 83 LEU n 1 84 GLU n 1 85 LYS n 1 86 PRO n 1 87 ASP n 1 88 SER n 1 89 ASN n 1 90 THR n 1 91 ASP n 1 92 GLN n 1 93 ARG n 1 94 LEU n 1 95 LYS n 1 96 ILE n 1 97 ILE n 1 98 LYS n 1 99 LEU n 1 100 SER n 1 101 ASN n 1 102 LYS n 1 103 GLY n 1 104 LYS n 1 105 LYS n 1 106 TYR n 1 107 ILE n 1 108 LYS n 1 109 GLU n 1 110 ARG n 1 111 LYS n 1 112 ALA n 1 113 ILE n 1 114 MET n 1 115 SER n 1 116 HIS n 1 117 ILE n 1 118 ALA n 1 119 SER n 1 120 ASP n 1 121 MET n 1 122 THR n 1 123 SER n 1 124 ASP n 1 125 PHE n 1 126 ASP n 1 127 SER n 1 128 LYS n 1 129 GLU n 1 130 ILE n 1 131 GLU n 1 132 LYS n 1 133 VAL n 1 134 ARG n 1 135 GLN n 1 136 VAL n 1 137 LEU n 1 138 GLU n 1 139 ILE n 1 140 ILE n 1 141 ASP n 1 142 TYR n 1 143 ARG n 1 144 ILE n 1 145 GLN n 1 146 SER n 1 147 TYR n 1 148 THR n 1 149 SER n 1 150 LYS n 1 151 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'SERP1949, SE_1937, tcaR' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 35984' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus epidermidis RP62A' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 176279 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET21a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q5HLN6_STAEQ _struct_ref.pdbx_db_accession Q5HLN6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MVRRIEDHISFLEKFINDVNTLTAKLLKDLQTEYGISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNAEL VKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEIIDYRIQSYTSKL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KP5 A 1 ? 151 ? Q5HLN6 1 ? 151 ? 1 151 2 1 3KP5 B 1 ? 151 ? Q5HLN6 1 ? 151 ? 1 151 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KAN non-polymer . 'KANAMYCIN A' ? 'C18 H36 N4 O11' 484.499 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KP5 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.39 _exptl_crystal.density_percent_sol 48.46 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '0.1M Na-Hepes, pH 7.5, 8-14% PEG 4000, 10-13% 2-propanol precipitant, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2009-08-14 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97622 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSRRC BEAMLINE BL13C1' _diffrn_source.pdbx_synchrotron_site NSRRC _diffrn_source.pdbx_synchrotron_beamline BL13C1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97622 # _reflns.entry_id 3KP5 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.90 _reflns.number_obs 7318 _reflns.number_all 7422 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.065 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 27.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 6.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.90 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 89.4 _reflns_shell.Rmerge_I_obs 0.401 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.6 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 642 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3KP5 _refine.ls_number_reflns_obs 7048 _refine.ls_number_reflns_all 7422 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 30 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 95.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.233 _refine.ls_R_factor_R_free 0.276 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 342 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 59.55 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 3KP7 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3KP5 _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.42 _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2191 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 66 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 2396 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 30 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_angle_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.10 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.306 _refine_ls_shell.percent_reflns_obs 89.4 _refine_ls_shell.R_factor_R_free 0.515 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 15 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 499 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KP5 _struct.title 'Staphylococcus epidermidis TcaR in complex with kanamycin' _struct.pdbx_descriptor 'Transcriptional regulator TcaR, KANAMYCIN A' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KP5 _struct_keywords.pdbx_keywords 'TRANSCRIPTION REGULATOR/ANTIBIOTIC' _struct_keywords.text ;Multiple drug resistance, biofilm, transcription regulation, DNA binding, antibiotics, Transcription, TRANSCRIPTION REGULATOR-ANTIBIOTIC complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 4 ? TYR A 34 ? ARG A 4 TYR A 34 1 ? 31 HELX_P HELX_P2 2 SER A 37 ? GLU A 50 ? SER A 37 GLU A 50 1 ? 14 HELX_P HELX_P3 3 THR A 53 ? GLY A 62 ? THR A 53 GLY A 62 1 ? 10 HELX_P HELX_P4 4 ALA A 66 ? ASN A 77 ? ALA A 66 ASN A 77 1 ? 12 HELX_P HELX_P5 5 SER A 100 ? ASP A 120 ? SER A 100 ASP A 120 1 ? 21 HELX_P HELX_P6 6 ASP A 126 ? LYS A 150 ? ASP A 126 LYS A 150 1 ? 25 HELX_P HELX_P7 7 ASP B 7 ? GLY B 35 ? ASP B 7 GLY B 35 1 ? 29 HELX_P HELX_P8 8 SER B 37 ? LEU B 47 ? SER B 37 LEU B 47 1 ? 11 HELX_P HELX_P9 9 THR B 53 ? LYS B 60 ? THR B 53 LYS B 60 1 ? 8 HELX_P HELX_P10 10 ASN B 64 ? ARG B 71 ? ASN B 64 ARG B 71 1 ? 8 HELX_P HELX_P11 11 VAL B 72 ? ALA B 78 ? VAL B 72 ALA B 78 1 ? 7 HELX_P HELX_P12 12 SER B 100 ? MET B 121 ? SER B 100 MET B 121 1 ? 22 HELX_P HELX_P13 13 ASP B 126 ? LYS B 150 ? ASP B 126 LYS B 150 1 ? 25 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL B 81 ? LEU B 83 ? VAL B 81 LEU B 83 A 2 ILE B 97 ? LEU B 99 ? ILE B 97 LEU B 99 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LYS _pdbx_struct_sheet_hbond.range_1_label_asym_id B _pdbx_struct_sheet_hbond.range_1_label_seq_id 82 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_1_auth_asym_id B _pdbx_struct_sheet_hbond.range_1_auth_seq_id 82 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id LYS _pdbx_struct_sheet_hbond.range_2_label_asym_id B _pdbx_struct_sheet_hbond.range_2_label_seq_id 98 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id LYS _pdbx_struct_sheet_hbond.range_2_auth_asym_id B _pdbx_struct_sheet_hbond.range_2_auth_seq_id 98 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE KAN A 2001' AC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE KAN B 2002' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 VAL A 19 ? VAL A 19 . ? 1_555 ? 2 AC1 13 ASN A 20 ? ASN A 20 . ? 1_555 ? 3 AC1 13 THR A 23 ? THR A 23 . ? 1_555 ? 4 AC1 13 GLN A 31 ? GLN A 31 . ? 1_555 ? 5 AC1 13 ALA A 38 ? ALA A 38 . ? 1_555 ? 6 AC1 13 GLU A 39 ? GLU A 39 . ? 1_555 ? 7 AC1 13 SER A 41 ? SER A 41 . ? 1_555 ? 8 AC1 13 HIS A 42 ? HIS A 42 . ? 1_555 ? 9 AC1 13 GLN A 61 ? GLN A 61 . ? 1_555 ? 10 AC1 13 ARG A 110 ? ARG A 110 . ? 1_555 ? 11 AC1 13 GLU B 13 ? GLU B 13 . ? 1_555 ? 12 AC1 13 ASN B 17 ? ASN B 17 . ? 1_555 ? 13 AC1 13 GLN B 61 ? GLN B 61 . ? 1_555 ? 14 AC2 8 ASP A 29 ? ASP A 29 . ? 4_444 ? 15 AC2 8 GLU B 33 ? GLU B 33 . ? 4_445 ? 16 AC2 8 TYR B 34 ? TYR B 34 . ? 4_445 ? 17 AC2 8 ALA B 66 ? ALA B 66 . ? 1_555 ? 18 AC2 8 ARG B 70 ? ARG B 70 . ? 1_555 ? 19 AC2 8 LYS B 74 ? LYS B 74 . ? 1_555 ? 20 AC2 8 LYS B 102 ? LYS B 102 . ? 4_445 ? 21 AC2 8 LYS B 105 ? LYS B 105 . ? 4_445 ? # _database_PDB_matrix.entry_id 3KP5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KP5 _atom_sites.fract_transf_matrix[1][1] 0.009274 _atom_sites.fract_transf_matrix[1][2] 0.005354 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010709 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020234 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 VAL 2 2 ? ? ? A . n A 1 3 ARG 3 3 ? ? ? A . n A 1 4 ARG 4 4 4 ARG ARG A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 HIS 8 8 8 HIS HIS A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 LEU 12 12 12 LEU LEU A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ASN 17 17 17 ASN ASN A . n A 1 18 ASP 18 18 18 ASP ASP A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 LEU 27 27 27 LEU LEU A . n A 1 28 LYS 28 28 28 LYS LYS A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 GLU 33 33 33 GLU GLU A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ILE 36 36 36 ILE ILE A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 HIS 42 42 42 HIS HIS A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 ASN 45 45 45 ASN ASN A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 SER 48 48 48 SER SER A . n A 1 49 ILE 49 49 49 ILE ILE A . n A 1 50 GLU 50 50 50 GLU GLU A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 GLY 55 55 55 GLY GLY A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 ASN 64 64 64 ASN ASN A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ALA 66 66 66 ALA ALA A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ARG 70 70 70 ARG ARG A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LYS 74 74 74 LYS LYS A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 GLU 79 79 79 GLU GLU A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 VAL 81 81 81 VAL VAL A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 LEU 83 83 83 LEU LEU A . n A 1 84 GLU 84 84 ? ? ? A . n A 1 85 LYS 85 85 ? ? ? A . n A 1 86 PRO 86 86 ? ? ? A . n A 1 87 ASP 87 87 ? ? ? A . n A 1 88 SER 88 88 ? ? ? A . n A 1 89 ASN 89 89 ? ? ? A . n A 1 90 THR 90 90 ? ? ? A . n A 1 91 ASP 91 91 ? ? ? A . n A 1 92 GLN 92 92 ? ? ? A . n A 1 93 ARG 93 93 ? ? ? A . n A 1 94 LEU 94 94 ? ? ? A . n A 1 95 LYS 95 95 ? ? ? A . n A 1 96 ILE 96 96 96 ILE ILE A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 SER 100 100 100 SER SER A . n A 1 101 ASN 101 101 101 ASN ASN A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 LYS 104 104 104 LYS LYS A . n A 1 105 LYS 105 105 105 LYS LYS A . n A 1 106 TYR 106 106 106 TYR TYR A . n A 1 107 ILE 107 107 107 ILE ILE A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LYS 111 111 111 LYS LYS A . n A 1 112 ALA 112 112 112 ALA ALA A . n A 1 113 ILE 113 113 113 ILE ILE A . n A 1 114 MET 114 114 114 MET MET A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 HIS 116 116 116 HIS HIS A . n A 1 117 ILE 117 117 117 ILE ILE A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 ASP 120 120 120 ASP ASP A . n A 1 121 MET 121 121 121 MET MET A . n A 1 122 THR 122 122 122 THR THR A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 PHE 125 125 125 PHE PHE A . n A 1 126 ASP 126 126 126 ASP ASP A . n A 1 127 SER 127 127 127 SER SER A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 GLU 129 129 129 GLU GLU A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 GLU 131 131 131 GLU GLU A . n A 1 132 LYS 132 132 132 LYS LYS A . n A 1 133 VAL 133 133 133 VAL VAL A . n A 1 134 ARG 134 134 134 ARG ARG A . n A 1 135 GLN 135 135 135 GLN GLN A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 LEU 137 137 137 LEU LEU A . n A 1 138 GLU 138 138 138 GLU GLU A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 ILE 140 140 140 ILE ILE A . n A 1 141 ASP 141 141 141 ASP ASP A . n A 1 142 TYR 142 142 142 TYR TYR A . n A 1 143 ARG 143 143 143 ARG ARG A . n A 1 144 ILE 144 144 144 ILE ILE A . n A 1 145 GLN 145 145 145 GLN GLN A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 TYR 147 147 147 TYR TYR A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 SER 149 149 149 SER SER A . n A 1 150 LYS 150 150 150 LYS LYS A . n A 1 151 LEU 151 151 151 LEU LEU A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 VAL 2 2 ? ? ? B . n B 1 3 ARG 3 3 ? ? ? B . n B 1 4 ARG 4 4 ? ? ? B . n B 1 5 ILE 5 5 5 ILE ILE B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 ASP 7 7 7 ASP ASP B . n B 1 8 HIS 8 8 8 HIS HIS B . n B 1 9 ILE 9 9 9 ILE ILE B . n B 1 10 SER 10 10 10 SER SER B . n B 1 11 PHE 11 11 11 PHE PHE B . n B 1 12 LEU 12 12 12 LEU LEU B . n B 1 13 GLU 13 13 13 GLU GLU B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 PHE 15 15 15 PHE PHE B . n B 1 16 ILE 16 16 16 ILE ILE B . n B 1 17 ASN 17 17 17 ASN ASN B . n B 1 18 ASP 18 18 18 ASP ASP B . n B 1 19 VAL 19 19 19 VAL VAL B . n B 1 20 ASN 20 20 20 ASN ASN B . n B 1 21 THR 21 21 21 THR THR B . n B 1 22 LEU 22 22 22 LEU LEU B . n B 1 23 THR 23 23 23 THR THR B . n B 1 24 ALA 24 24 24 ALA ALA B . n B 1 25 LYS 25 25 25 LYS LYS B . n B 1 26 LEU 26 26 26 LEU LEU B . n B 1 27 LEU 27 27 27 LEU LEU B . n B 1 28 LYS 28 28 28 LYS LYS B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 LEU 30 30 30 LEU LEU B . n B 1 31 GLN 31 31 31 GLN GLN B . n B 1 32 THR 32 32 32 THR THR B . n B 1 33 GLU 33 33 33 GLU GLU B . n B 1 34 TYR 34 34 34 TYR TYR B . n B 1 35 GLY 35 35 35 GLY GLY B . n B 1 36 ILE 36 36 36 ILE ILE B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 ALA 38 38 38 ALA ALA B . n B 1 39 GLU 39 39 39 GLU GLU B . n B 1 40 GLN 40 40 40 GLN GLN B . n B 1 41 SER 41 41 41 SER SER B . n B 1 42 HIS 42 42 42 HIS HIS B . n B 1 43 VAL 43 43 43 VAL VAL B . n B 1 44 LEU 44 44 44 LEU LEU B . n B 1 45 ASN 45 45 45 ASN ASN B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 LEU 47 47 47 LEU LEU B . n B 1 48 SER 48 48 48 SER SER B . n B 1 49 ILE 49 49 49 ILE ILE B . n B 1 50 GLU 50 50 50 GLU GLU B . n B 1 51 ALA 51 51 51 ALA ALA B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 THR 53 53 53 THR THR B . n B 1 54 VAL 54 54 54 VAL VAL B . n B 1 55 GLY 55 55 55 GLY GLY B . n B 1 56 GLN 56 56 56 GLN GLN B . n B 1 57 ILE 57 57 57 ILE ILE B . n B 1 58 THR 58 58 58 THR THR B . n B 1 59 GLU 59 59 59 GLU GLU B . n B 1 60 LYS 60 60 60 LYS LYS B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 GLY 62 62 62 GLY GLY B . n B 1 63 VAL 63 63 63 VAL VAL B . n B 1 64 ASN 64 64 64 ASN ASN B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 ALA 66 66 66 ALA ALA B . n B 1 67 ALA 67 67 67 ALA ALA B . n B 1 68 VAL 68 68 68 VAL VAL B . n B 1 69 SER 69 69 69 SER SER B . n B 1 70 ARG 70 70 70 ARG ARG B . n B 1 71 ARG 71 71 71 ARG ARG B . n B 1 72 VAL 72 72 72 VAL VAL B . n B 1 73 LYS 73 73 73 LYS LYS B . n B 1 74 LYS 74 74 74 LYS LYS B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 ASN 77 77 77 ASN ASN B . n B 1 78 ALA 78 78 78 ALA ALA B . n B 1 79 GLU 79 79 79 GLU GLU B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 VAL 81 81 81 VAL VAL B . n B 1 82 LYS 82 82 82 LYS LYS B . n B 1 83 LEU 83 83 83 LEU LEU B . n B 1 84 GLU 84 84 84 GLU GLU B . n B 1 85 LYS 85 85 ? ? ? B . n B 1 86 PRO 86 86 ? ? ? B . n B 1 87 ASP 87 87 ? ? ? B . n B 1 88 SER 88 88 ? ? ? B . n B 1 89 ASN 89 89 ? ? ? B . n B 1 90 THR 90 90 ? ? ? B . n B 1 91 ASP 91 91 ? ? ? B . n B 1 92 GLN 92 92 ? ? ? B . n B 1 93 ARG 93 93 ? ? ? B . n B 1 94 LEU 94 94 ? ? ? B . n B 1 95 LYS 95 95 95 LYS LYS B . n B 1 96 ILE 96 96 96 ILE ILE B . n B 1 97 ILE 97 97 97 ILE ILE B . n B 1 98 LYS 98 98 98 LYS LYS B . n B 1 99 LEU 99 99 99 LEU LEU B . n B 1 100 SER 100 100 100 SER SER B . n B 1 101 ASN 101 101 101 ASN ASN B . n B 1 102 LYS 102 102 102 LYS LYS B . n B 1 103 GLY 103 103 103 GLY GLY B . n B 1 104 LYS 104 104 104 LYS LYS B . n B 1 105 LYS 105 105 105 LYS LYS B . n B 1 106 TYR 106 106 106 TYR TYR B . n B 1 107 ILE 107 107 107 ILE ILE B . n B 1 108 LYS 108 108 108 LYS LYS B . n B 1 109 GLU 109 109 109 GLU GLU B . n B 1 110 ARG 110 110 110 ARG ARG B . n B 1 111 LYS 111 111 111 LYS LYS B . n B 1 112 ALA 112 112 112 ALA ALA B . n B 1 113 ILE 113 113 113 ILE ILE B . n B 1 114 MET 114 114 114 MET MET B . n B 1 115 SER 115 115 115 SER SER B . n B 1 116 HIS 116 116 116 HIS HIS B . n B 1 117 ILE 117 117 117 ILE ILE B . n B 1 118 ALA 118 118 118 ALA ALA B . n B 1 119 SER 119 119 119 SER SER B . n B 1 120 ASP 120 120 120 ASP ASP B . n B 1 121 MET 121 121 121 MET MET B . n B 1 122 THR 122 122 122 THR THR B . n B 1 123 SER 123 123 123 SER SER B . n B 1 124 ASP 124 124 124 ASP ASP B . n B 1 125 PHE 125 125 125 PHE PHE B . n B 1 126 ASP 126 126 126 ASP ASP B . n B 1 127 SER 127 127 127 SER SER B . n B 1 128 LYS 128 128 128 LYS LYS B . n B 1 129 GLU 129 129 129 GLU GLU B . n B 1 130 ILE 130 130 130 ILE ILE B . n B 1 131 GLU 131 131 131 GLU GLU B . n B 1 132 LYS 132 132 132 LYS LYS B . n B 1 133 VAL 133 133 133 VAL VAL B . n B 1 134 ARG 134 134 134 ARG ARG B . n B 1 135 GLN 135 135 135 GLN GLN B . n B 1 136 VAL 136 136 136 VAL VAL B . n B 1 137 LEU 137 137 137 LEU LEU B . n B 1 138 GLU 138 138 138 GLU GLU B . n B 1 139 ILE 139 139 139 ILE ILE B . n B 1 140 ILE 140 140 140 ILE ILE B . n B 1 141 ASP 141 141 141 ASP ASP B . n B 1 142 TYR 142 142 142 TYR TYR B . n B 1 143 ARG 143 143 143 ARG ARG B . n B 1 144 ILE 144 144 144 ILE ILE B . n B 1 145 GLN 145 145 145 GLN GLN B . n B 1 146 SER 146 146 146 SER SER B . n B 1 147 TYR 147 147 147 TYR TYR B . n B 1 148 THR 148 148 148 THR THR B . n B 1 149 SER 149 149 149 SER SER B . n B 1 150 LYS 150 150 150 LYS LYS B . n B 1 151 LEU 151 151 151 LEU LEU B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6760 ? 1 MORE -35 ? 1 'SSA (A^2)' 15450 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-09 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 CNS refinement . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 CNS phasing . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 B GLU 50 ? ? O B HOH 1044 ? ? 1.79 2 1 O B LEU 52 ? ? CG1 B ILE 97 ? ? 1.92 3 1 N B LYS 95 ? ? O B HOH 1144 ? ? 1.99 4 1 NH1 B ARG 71 ? ? O B HOH 1089 ? ? 2.03 5 1 NZ B LYS 14 ? ? O B HOH 1093 ? ? 2.17 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 1132 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 1041 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 5_554 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 61 ? ? -51.18 -87.71 2 1 ASN A 64 ? ? -58.01 -143.30 3 1 ALA A 66 ? ? 54.33 -6.73 4 1 ILE A 97 ? ? 49.66 108.28 5 1 LYS A 98 ? ? -119.27 -119.04 6 1 ASP A 120 ? ? -54.74 -3.85 7 1 GLU B 6 ? ? -151.83 20.37 8 1 LYS B 60 ? ? -60.69 5.61 9 1 LYS B 65 ? ? -39.33 -36.54 10 1 ILE B 96 ? ? -156.60 -157.72 11 1 ASP B 120 ? ? -34.01 -80.59 12 1 MET B 121 ? ? -59.76 13.64 13 1 LYS B 150 ? ? -62.84 -94.83 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A VAL 2 ? A VAL 2 3 1 Y 1 A ARG 3 ? A ARG 3 4 1 Y 1 A GLU 84 ? A GLU 84 5 1 Y 1 A LYS 85 ? A LYS 85 6 1 Y 1 A PRO 86 ? A PRO 86 7 1 Y 1 A ASP 87 ? A ASP 87 8 1 Y 1 A SER 88 ? A SER 88 9 1 Y 1 A ASN 89 ? A ASN 89 10 1 Y 1 A THR 90 ? A THR 90 11 1 Y 1 A ASP 91 ? A ASP 91 12 1 Y 1 A GLN 92 ? A GLN 92 13 1 Y 1 A ARG 93 ? A ARG 93 14 1 Y 1 A LEU 94 ? A LEU 94 15 1 Y 1 A LYS 95 ? A LYS 95 16 1 Y 1 B MET 1 ? B MET 1 17 1 Y 1 B VAL 2 ? B VAL 2 18 1 Y 1 B ARG 3 ? B ARG 3 19 1 Y 1 B ARG 4 ? B ARG 4 20 1 Y 1 B LYS 85 ? B LYS 85 21 1 Y 1 B PRO 86 ? B PRO 86 22 1 Y 1 B ASP 87 ? B ASP 87 23 1 Y 1 B SER 88 ? B SER 88 24 1 Y 1 B ASN 89 ? B ASN 89 25 1 Y 1 B THR 90 ? B THR 90 26 1 Y 1 B ASP 91 ? B ASP 91 27 1 Y 1 B GLN 92 ? B GLN 92 28 1 Y 1 B ARG 93 ? B ARG 93 29 1 Y 1 B LEU 94 ? B LEU 94 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'KANAMYCIN A' KAN 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 KAN 1 2001 2001 KAN KAN A . D 2 KAN 1 2002 2002 KAN KAN B . E 3 HOH 1 1002 1002 HOH HOH A . E 3 HOH 2 1003 1003 HOH HOH A . E 3 HOH 3 1004 1004 HOH HOH A . E 3 HOH 4 1008 1008 HOH HOH A . E 3 HOH 5 1009 1009 HOH HOH A . E 3 HOH 6 1010 1010 HOH HOH A . E 3 HOH 7 1011 1011 HOH HOH A . E 3 HOH 8 1012 1012 HOH HOH A . E 3 HOH 9 1014 1014 HOH HOH A . E 3 HOH 10 1016 1016 HOH HOH A . E 3 HOH 11 1017 1017 HOH HOH A . E 3 HOH 12 1018 1018 HOH HOH A . E 3 HOH 13 1020 1020 HOH HOH A . E 3 HOH 14 1021 1021 HOH HOH A . E 3 HOH 15 1022 1022 HOH HOH A . E 3 HOH 16 1024 1024 HOH HOH A . E 3 HOH 17 1025 1025 HOH HOH A . E 3 HOH 18 1026 1026 HOH HOH A . E 3 HOH 19 1027 1027 HOH HOH A . E 3 HOH 20 1028 1028 HOH HOH A . E 3 HOH 21 1029 1029 HOH HOH A . E 3 HOH 22 1030 1030 HOH HOH A . E 3 HOH 23 1032 1032 HOH HOH A . E 3 HOH 24 1033 1033 HOH HOH A . E 3 HOH 25 1038 1038 HOH HOH A . E 3 HOH 26 1039 1039 HOH HOH A . E 3 HOH 27 1043 1043 HOH HOH A . E 3 HOH 28 1046 1046 HOH HOH A . E 3 HOH 29 1047 1047 HOH HOH A . E 3 HOH 30 1048 1048 HOH HOH A . E 3 HOH 31 1051 1051 HOH HOH A . E 3 HOH 32 1053 1053 HOH HOH A . E 3 HOH 33 1054 1054 HOH HOH A . E 3 HOH 34 1055 1055 HOH HOH A . E 3 HOH 35 1059 1059 HOH HOH A . E 3 HOH 36 1060 1060 HOH HOH A . E 3 HOH 37 1061 1061 HOH HOH A . E 3 HOH 38 1062 1062 HOH HOH A . E 3 HOH 39 1064 1064 HOH HOH A . E 3 HOH 40 1065 1065 HOH HOH A . E 3 HOH 41 1068 1068 HOH HOH A . E 3 HOH 42 1069 1069 HOH HOH A . E 3 HOH 43 1070 1070 HOH HOH A . E 3 HOH 44 1071 1071 HOH HOH A . E 3 HOH 45 1072 1072 HOH HOH A . E 3 HOH 46 1073 1073 HOH HOH A . E 3 HOH 47 1074 1074 HOH HOH A . E 3 HOH 48 1075 1075 HOH HOH A . E 3 HOH 49 1080 1080 HOH HOH A . E 3 HOH 50 1081 1081 HOH HOH A . E 3 HOH 51 1082 1082 HOH HOH A . E 3 HOH 52 1084 1084 HOH HOH A . E 3 HOH 53 1085 1085 HOH HOH A . E 3 HOH 54 1086 1086 HOH HOH A . E 3 HOH 55 1087 1087 HOH HOH A . E 3 HOH 56 1094 1094 HOH HOH A . E 3 HOH 57 1095 1095 HOH HOH A . E 3 HOH 58 1096 1096 HOH HOH A . E 3 HOH 59 1099 1099 HOH HOH A . E 3 HOH 60 1100 1100 HOH HOH A . E 3 HOH 61 1104 1104 HOH HOH A . E 3 HOH 62 1105 1105 HOH HOH A . E 3 HOH 63 1106 1106 HOH HOH A . E 3 HOH 64 1110 1110 HOH HOH A . E 3 HOH 65 1111 1111 HOH HOH A . E 3 HOH 66 1113 1113 HOH HOH A . E 3 HOH 67 1114 1114 HOH HOH A . E 3 HOH 68 1115 1115 HOH HOH A . E 3 HOH 69 1116 1116 HOH HOH A . E 3 HOH 70 1117 1117 HOH HOH A . E 3 HOH 71 1120 1120 HOH HOH A . E 3 HOH 72 1123 1123 HOH HOH A . E 3 HOH 73 1126 1126 HOH HOH A . E 3 HOH 74 1129 1129 HOH HOH A . E 3 HOH 75 1130 1130 HOH HOH A . E 3 HOH 76 1132 1132 HOH HOH A . E 3 HOH 77 1134 1134 HOH HOH A . E 3 HOH 78 1139 1139 HOH HOH A . E 3 HOH 79 1140 1140 HOH HOH A . E 3 HOH 80 1142 1142 HOH HOH A . E 3 HOH 81 1145 1145 HOH HOH A . F 3 HOH 1 1001 1001 HOH HOH B . F 3 HOH 2 1005 1005 HOH HOH B . F 3 HOH 3 1006 1006 HOH HOH B . F 3 HOH 4 1007 1007 HOH HOH B . F 3 HOH 5 1013 1013 HOH HOH B . F 3 HOH 6 1015 1015 HOH HOH B . F 3 HOH 7 1019 1019 HOH HOH B . F 3 HOH 8 1023 1023 HOH HOH B . F 3 HOH 9 1031 1031 HOH HOH B . F 3 HOH 10 1034 1034 HOH HOH B . F 3 HOH 11 1035 1035 HOH HOH B . F 3 HOH 12 1036 1036 HOH HOH B . F 3 HOH 13 1037 1037 HOH HOH B . F 3 HOH 14 1040 1040 HOH HOH B . F 3 HOH 15 1041 1041 HOH HOH B . F 3 HOH 16 1042 1042 HOH HOH B . F 3 HOH 17 1044 1044 HOH HOH B . F 3 HOH 18 1045 1045 HOH HOH B . F 3 HOH 19 1049 1049 HOH HOH B . F 3 HOH 20 1050 1050 HOH HOH B . F 3 HOH 21 1052 1052 HOH HOH B . F 3 HOH 22 1056 1056 HOH HOH B . F 3 HOH 23 1057 1057 HOH HOH B . F 3 HOH 24 1058 1058 HOH HOH B . F 3 HOH 25 1063 1063 HOH HOH B . F 3 HOH 26 1067 1067 HOH HOH B . F 3 HOH 27 1077 1077 HOH HOH B . F 3 HOH 28 1078 1078 HOH HOH B . F 3 HOH 29 1079 1079 HOH HOH B . F 3 HOH 30 1088 1088 HOH HOH B . F 3 HOH 31 1089 1089 HOH HOH B . F 3 HOH 32 1090 1090 HOH HOH B . F 3 HOH 33 1092 1092 HOH HOH B . F 3 HOH 34 1093 1093 HOH HOH B . F 3 HOH 35 1097 1097 HOH HOH B . F 3 HOH 36 1098 1098 HOH HOH B . F 3 HOH 37 1101 1101 HOH HOH B . F 3 HOH 38 1102 1102 HOH HOH B . F 3 HOH 39 1103 1103 HOH HOH B . F 3 HOH 40 1107 1107 HOH HOH B . F 3 HOH 41 1108 1108 HOH HOH B . F 3 HOH 42 1109 1109 HOH HOH B . F 3 HOH 43 1112 1112 HOH HOH B . F 3 HOH 44 1118 1118 HOH HOH B . F 3 HOH 45 1119 1119 HOH HOH B . F 3 HOH 46 1121 1121 HOH HOH B . F 3 HOH 47 1124 1124 HOH HOH B . F 3 HOH 48 1125 1125 HOH HOH B . F 3 HOH 49 1127 1127 HOH HOH B . F 3 HOH 50 1128 1128 HOH HOH B . F 3 HOH 51 1133 1133 HOH HOH B . F 3 HOH 52 1135 1135 HOH HOH B . F 3 HOH 53 1136 1136 HOH HOH B . F 3 HOH 54 1137 1137 HOH HOH B . F 3 HOH 55 1138 1138 HOH HOH B . F 3 HOH 56 1141 1141 HOH HOH B . F 3 HOH 57 1143 1143 HOH HOH B . F 3 HOH 58 1144 1144 HOH HOH B . #