data_3KP9 # _entry.id 3KP9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.350 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KP9 pdb_00003kp9 10.2210/pdb3kp9/pdb RCSB RCSB056275 ? ? WWPDB D_1000056275 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3KP8 _pdbx_database_related.details 'The thioredoxin-like domain of a VKOR homolog from Synechococcus sp.' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KP9 _pdbx_database_status.recvd_initial_deposition_date 2009-11-16 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, W.' 1 'Schulman, S.' 2 'Dutton, R.J.' 3 'Boyd, D.' 4 'Beckwith, J.' 5 'Rapoport, T.A.' 6 # _citation.id primary _citation.title 'Structure of a bacterial homologue of vitamin K epoxide reductase.' _citation.journal_abbrev Nature _citation.journal_volume 463 _citation.page_first 507 _citation.page_last 512 _citation.year 2010 _citation.journal_id_ASTM NATUAS _citation.country UK _citation.journal_id_ISSN 0028-0836 _citation.journal_id_CSD 0006 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20110994 _citation.pdbx_database_id_DOI 10.1038/nature08720 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Li, W.' 1 ? primary 'Schulman, S.' 2 ? primary 'Dutton, R.J.' 3 ? primary 'Boyd, D.' 4 ? primary 'Beckwith, J.' 5 ? primary 'Rapoport, T.A.' 6 ? # _cell.entry_id 3KP9 _cell.length_a 136.942 _cell.length_b 136.942 _cell.length_c 68.480 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KP9 _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'VKORC1/thioredoxin domain protein' 31668.775 1 1.1.4.2 C56S ? ? 2 non-polymer syn UBIQUINONE-10 863.343 1 ? ? ? ? 3 non-polymer syn 'MERCURY (II) ION' 200.590 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MASYLKLKAQEETWLQRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGDGGSDLVLSSRWAEFLGIPTAAVGLLGF LGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLA FSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQ AQECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYPLEEGRLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MASYLKLKAQEETWLQRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGDGGSDLVLSSRWAEFLGIPTAAVGLLGF LGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLA FSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQ AQECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYPLEEGRLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 SER n 1 4 TYR n 1 5 LEU n 1 6 LYS n 1 7 LEU n 1 8 LYS n 1 9 ALA n 1 10 GLN n 1 11 GLU n 1 12 GLU n 1 13 THR n 1 14 TRP n 1 15 LEU n 1 16 GLN n 1 17 ARG n 1 18 HIS n 1 19 SER n 1 20 ARG n 1 21 LEU n 1 22 ILE n 1 23 LEU n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 ALA n 1 28 GLY n 1 29 LEU n 1 30 GLY n 1 31 SER n 1 32 LEU n 1 33 LEU n 1 34 THR n 1 35 ALA n 1 36 TYR n 1 37 LEU n 1 38 THR n 1 39 TYR n 1 40 THR n 1 41 LYS n 1 42 LEU n 1 43 THR n 1 44 GLU n 1 45 GLN n 1 46 PRO n 1 47 ALA n 1 48 ALA n 1 49 PHE n 1 50 CYS n 1 51 THR n 1 52 GLY n 1 53 ASP n 1 54 GLY n 1 55 GLY n 1 56 SER n 1 57 ASP n 1 58 LEU n 1 59 VAL n 1 60 LEU n 1 61 SER n 1 62 SER n 1 63 ARG n 1 64 TRP n 1 65 ALA n 1 66 GLU n 1 67 PHE n 1 68 LEU n 1 69 GLY n 1 70 ILE n 1 71 PRO n 1 72 THR n 1 73 ALA n 1 74 ALA n 1 75 VAL n 1 76 GLY n 1 77 LEU n 1 78 LEU n 1 79 GLY n 1 80 PHE n 1 81 LEU n 1 82 GLY n 1 83 VAL n 1 84 LEU n 1 85 ALA n 1 86 LEU n 1 87 ALA n 1 88 VAL n 1 89 LEU n 1 90 PRO n 1 91 ASP n 1 92 GLY n 1 93 LEU n 1 94 PRO n 1 95 LEU n 1 96 VAL n 1 97 LYS n 1 98 ARG n 1 99 TRP n 1 100 ARG n 1 101 TRP n 1 102 PRO n 1 103 ALA n 1 104 LEU n 1 105 PHE n 1 106 GLY n 1 107 LEU n 1 108 VAL n 1 109 SER n 1 110 ALA n 1 111 MET n 1 112 THR n 1 113 ALA n 1 114 PHE n 1 115 GLU n 1 116 MET n 1 117 TYR n 1 118 MET n 1 119 LEU n 1 120 TYR n 1 121 LEU n 1 122 MET n 1 123 VAL n 1 124 ALA n 1 125 VAL n 1 126 LEU n 1 127 ARG n 1 128 GLN n 1 129 PHE n 1 130 CYS n 1 131 MET n 1 132 TYR n 1 133 CYS n 1 134 THR n 1 135 THR n 1 136 ALA n 1 137 ILE n 1 138 ILE n 1 139 LEU n 1 140 VAL n 1 141 ALA n 1 142 GLY n 1 143 LEU n 1 144 GLY n 1 145 LEU n 1 146 VAL n 1 147 THR n 1 148 VAL n 1 149 LEU n 1 150 GLY n 1 151 HIS n 1 152 ARG n 1 153 TRP n 1 154 LEU n 1 155 ASP n 1 156 GLY n 1 157 GLY n 1 158 LYS n 1 159 LEU n 1 160 ALA n 1 161 PHE n 1 162 SER n 1 163 TYR n 1 164 ILE n 1 165 LEU n 1 166 VAL n 1 167 ALA n 1 168 PHE n 1 169 LEU n 1 170 THR n 1 171 LEU n 1 172 VAL n 1 173 THR n 1 174 THR n 1 175 ILE n 1 176 GLY n 1 177 VAL n 1 178 TYR n 1 179 ALA n 1 180 ASN n 1 181 GLN n 1 182 VAL n 1 183 PRO n 1 184 PRO n 1 185 PRO n 1 186 SER n 1 187 PRO n 1 188 LEU n 1 189 ALA n 1 190 VAL n 1 191 GLY n 1 192 LEU n 1 193 ALA n 1 194 ALA n 1 195 HIS n 1 196 LEU n 1 197 ARG n 1 198 GLN n 1 199 ILE n 1 200 GLY n 1 201 GLY n 1 202 THR n 1 203 MET n 1 204 TYR n 1 205 GLY n 1 206 ALA n 1 207 TYR n 1 208 TRP n 1 209 CYS n 1 210 PRO n 1 211 HIS n 1 212 CYS n 1 213 GLN n 1 214 ASP n 1 215 GLN n 1 216 LYS n 1 217 GLU n 1 218 LEU n 1 219 PHE n 1 220 GLY n 1 221 ALA n 1 222 ALA n 1 223 PHE n 1 224 ASP n 1 225 GLN n 1 226 VAL n 1 227 PRO n 1 228 TYR n 1 229 VAL n 1 230 GLU n 1 231 CYS n 1 232 SER n 1 233 PRO n 1 234 ASN n 1 235 GLY n 1 236 PRO n 1 237 GLY n 1 238 THR n 1 239 PRO n 1 240 GLN n 1 241 ALA n 1 242 GLN n 1 243 GLU n 1 244 CYS n 1 245 THR n 1 246 GLU n 1 247 ALA n 1 248 GLY n 1 249 ILE n 1 250 THR n 1 251 SER n 1 252 TYR n 1 253 PRO n 1 254 THR n 1 255 TRP n 1 256 ILE n 1 257 ILE n 1 258 ASN n 1 259 GLY n 1 260 ARG n 1 261 THR n 1 262 TYR n 1 263 THR n 1 264 GLY n 1 265 VAL n 1 266 ARG n 1 267 SER n 1 268 LEU n 1 269 GLU n 1 270 ALA n 1 271 LEU n 1 272 ALA n 1 273 VAL n 1 274 ALA n 1 275 SER n 1 276 GLY n 1 277 TYR n 1 278 PRO n 1 279 LEU n 1 280 GLU n 1 281 GLU n 1 282 GLY n 1 283 ARG n 1 284 LEU n 1 285 GLU n 1 286 HIS n 1 287 HIS n 1 288 HIS n 1 289 HIS n 1 290 HIS n 1 291 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene CYB_2278 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain "JA-2-3B'a(2-13)" _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Synechococcus sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 321332 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q2JJF6_SYNJB _struct_ref.pdbx_db_accession Q2JJF6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MASYLKLKAQEETWLQRHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGDGGCDLVLSSRWAEFLGIPTAAVGLLGF LGVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIILVAGLGLVTVLGHRWLDGGKLA FSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQ AQECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYPLEEGR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KP9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 283 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q2JJF6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 283 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 283 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KP9 SER A 56 ? UNP Q2JJF6 CYS 56 'engineered mutation' 56 1 1 3KP9 LEU A 284 ? UNP Q2JJF6 ? ? 'expression tag' 284 2 1 3KP9 GLU A 285 ? UNP Q2JJF6 ? ? 'expression tag' 285 3 1 3KP9 HIS A 286 ? UNP Q2JJF6 ? ? 'expression tag' 286 4 1 3KP9 HIS A 287 ? UNP Q2JJF6 ? ? 'expression tag' 287 5 1 3KP9 HIS A 288 ? UNP Q2JJF6 ? ? 'expression tag' 288 6 1 3KP9 HIS A 289 ? UNP Q2JJF6 ? ? 'expression tag' 289 7 1 3KP9 HIS A 290 ? UNP Q2JJF6 ? ? 'expression tag' 290 8 1 3KP9 HIS A 291 ? UNP Q2JJF6 ? ? 'expression tag' 291 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HG non-polymer . 'MERCURY (II) ION' ? 'Hg 2' 200.590 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U10 non-polymer . UBIQUINONE-10 'Coenzyme Q10' 'C59 H90 O4' 863.343 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KP9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 5.85 _exptl_crystal.density_percent_sol 78.985 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '15% PEG1000, 0.2M magnesium chloride, pH 7, EVAPORATION, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-11-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol MIR _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.00718 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.00718 # _reflns.entry_id 3KP9 _reflns.observed_criterion_sigma_I 1 _reflns.observed_criterion_sigma_F 1 _reflns.d_resolution_low 118.60 _reflns.d_resolution_high 3.6 _reflns.number_obs 8572 _reflns.number_all 8650 _reflns.percent_possible_obs 99.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3KP9 _refine.ls_number_reflns_obs 7714 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 44.83 _refine.ls_d_res_high 3.60 _refine.ls_percent_reflns_obs 99.05 _refine.ls_R_factor_obs 0.25627 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.25114 _refine.ls_R_factor_R_free 0.30500 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 855 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.861 _refine.correlation_coeff_Fo_to_Fc_free 0.855 _refine.B_iso_mean 55.017 _refine.aniso_B[1][1] 2.74 _refine.aniso_B[2][2] 2.74 _refine.aniso_B[3][3] -4.12 _refine.aniso_B[1][2] 1.37 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. Judging from the experimental electron density map, there is density between Cys130 and Cys133, indicative of a disulfide bridge, as well as density suggesting a covalent bond between the quinone ring of U10 and Cys133. We have not been able to use a refinement program to optimize both bond lengths at the same time ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MIR _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.581 _refine.overall_SU_ML 0.333 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 44.419 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1963 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 35 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1998 _refine_hist.d_res_high 3.60 _refine_hist.d_res_low 44.83 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.011 0.022 ? 2051 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.492 1.989 ? 2805 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.790 5.000 ? 256 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.577 22.206 ? 68 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 22.001 15.000 ? 299 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 17.564 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.106 0.200 ? 324 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.021 ? 1519 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.355 1.500 ? 1283 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.692 2.000 ? 2056 'X-RAY DIFFRACTION' ? r_scbond_it 0.847 3.000 ? 768 'X-RAY DIFFRACTION' ? r_scangle_it 1.443 4.500 ? 749 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.60 _refine_ls_shell.d_res_low 3.696 _refine_ls_shell.number_reflns_R_work 558 _refine_ls_shell.R_factor_R_work 0.293 _refine_ls_shell.percent_reflns_obs 96.75 _refine_ls_shell.R_factor_R_free 0.374 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 67 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _struct.entry_id 3KP9 _struct.title 'Structure of a bacterial homolog of vitamin K epoxide reductase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KP9 _struct_keywords.pdbx_keywords 'Blood Coagulation,OXIDOREDUCTASE' _struct_keywords.text 'Warfarin, Disulfide formation, Blood Coagulation, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 20 ? GLU A 44 ? ARG A 20 GLU A 44 1 ? 25 HELX_P HELX_P2 2 LEU A 58 ? SER A 62 ? LEU A 58 SER A 62 5 ? 5 HELX_P HELX_P3 3 THR A 72 ? LEU A 89 ? THR A 72 LEU A 89 1 ? 18 HELX_P HELX_P4 4 TRP A 99 ? ALA A 124 ? TRP A 99 ALA A 124 1 ? 26 HELX_P HELX_P5 5 CYS A 130 ? LEU A 149 ? CYS A 130 LEU A 149 1 ? 20 HELX_P HELX_P6 6 HIS A 151 ? GLY A 156 ? HIS A 151 GLY A 156 1 ? 6 HELX_P HELX_P7 7 GLY A 157 ? ASN A 180 ? GLY A 157 ASN A 180 1 ? 24 HELX_P HELX_P8 8 LEU A 188 ? ILE A 199 ? LEU A 188 ILE A 199 1 ? 12 HELX_P HELX_P9 9 CYS A 209 ? GLY A 220 ? CYS A 209 GLY A 220 1 ? 12 HELX_P HELX_P10 10 ALA A 221 ? VAL A 226 ? ALA A 221 VAL A 226 5 ? 6 HELX_P HELX_P11 11 ALA A 241 ? GLU A 246 ? ALA A 241 GLU A 246 1 ? 6 HELX_P HELX_P12 12 SER A 267 ? SER A 275 ? SER A 267 SER A 275 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 50 SG ? ? ? 1_555 A CYS 209 SG ? ? A CYS 50 A CYS 209 1_555 ? ? ? ? ? ? ? 2.044 ? ? disulf2 disulf ? ? A CYS 130 SG ? ? ? 1_555 A CYS 133 SG ? ? A CYS 130 A CYS 133 1_555 ? ? ? ? ? ? ? 2.060 ? ? disulf3 disulf ? ? A CYS 231 SG ? ? ? 1_555 A CYS 244 SG ? ? A CYS 231 A CYS 244 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc1 metalc ? ? A HIS 195 ND1 ? ? ? 1_555 D HG . HG ? ? A HIS 195 A HG 602 1_555 ? ? ? ? ? ? ? 2.013 ? ? metalc2 metalc ? ? A CYS 212 SG ? ? ? 1_555 C HG . HG ? ? A CYS 212 A HG 601 1_555 ? ? ? ? ? ? ? 1.759 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 66 ? PHE A 67 ? GLU A 66 PHE A 67 A 2 ILE A 70 ? PRO A 71 ? ILE A 70 PRO A 71 B 1 TYR A 228 ? GLU A 230 ? TYR A 228 GLU A 230 B 2 THR A 202 ? GLY A 205 ? THR A 202 GLY A 205 B 3 THR A 254 ? ILE A 257 ? THR A 254 ILE A 257 B 4 ARG A 260 ? THR A 263 ? ARG A 260 THR A 263 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 67 ? N PHE A 67 O ILE A 70 ? O ILE A 70 B 1 2 O VAL A 229 ? O VAL A 229 N MET A 203 ? N MET A 203 B 2 3 N TYR A 204 ? N TYR A 204 O THR A 254 ? O THR A 254 B 3 4 N TRP A 255 ? N TRP A 255 O TYR A 262 ? O TYR A 262 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A U10 501 ? 14 'BINDING SITE FOR RESIDUE U10 A 501' AC2 Software A HG 601 ? 2 'BINDING SITE FOR RESIDUE HG A 601' AC3 Software A HG 602 ? 1 'BINDING SITE FOR RESIDUE HG A 602' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 VAL A 59 ? VAL A 59 . ? 1_555 ? 2 AC1 14 ARG A 63 ? ARG A 63 . ? 1_555 ? 3 AC1 14 TRP A 64 ? TRP A 64 . ? 1_555 ? 4 AC1 14 ALA A 65 ? ALA A 65 . ? 1_555 ? 5 AC1 14 THR A 72 ? THR A 72 . ? 1_555 ? 6 AC1 14 ALA A 73 ? ALA A 73 . ? 1_555 ? 7 AC1 14 VAL A 75 ? VAL A 75 . ? 1_555 ? 8 AC1 14 GLY A 76 ? GLY A 76 . ? 1_555 ? 9 AC1 14 MET A 111 ? MET A 111 . ? 1_555 ? 10 AC1 14 PHE A 114 ? PHE A 114 . ? 1_555 ? 11 AC1 14 MET A 118 ? MET A 118 . ? 1_555 ? 12 AC1 14 LEU A 126 ? LEU A 126 . ? 1_555 ? 13 AC1 14 CYS A 133 ? CYS A 133 . ? 1_555 ? 14 AC1 14 THR A 170 ? THR A 170 . ? 1_555 ? 15 AC2 2 CYS A 212 ? CYS A 212 . ? 1_555 ? 16 AC2 2 TYR A 228 ? TYR A 228 . ? 1_555 ? 17 AC3 1 HIS A 195 ? HIS A 195 . ? 1_555 ? # _database_PDB_matrix.entry_id 3KP9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3KP9 _atom_sites.fract_transf_matrix[1][1] 0.007302 _atom_sites.fract_transf_matrix[1][2] 0.004216 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008432 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014603 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C HG N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 SER 3 3 ? ? ? A . n A 1 4 TYR 4 4 ? ? ? A . n A 1 5 LEU 5 5 ? ? ? A . n A 1 6 LYS 6 6 ? ? ? A . n A 1 7 LEU 7 7 ? ? ? A . n A 1 8 LYS 8 8 ? ? ? A . n A 1 9 ALA 9 9 ? ? ? A . n A 1 10 GLN 10 10 ? ? ? A . n A 1 11 GLU 11 11 ? ? ? A . n A 1 12 GLU 12 12 ? ? ? A . n A 1 13 THR 13 13 ? ? ? A . n A 1 14 TRP 14 14 ? ? ? A . n A 1 15 LEU 15 15 ? ? ? A . n A 1 16 GLN 16 16 16 GLN GLN A . n A 1 17 ARG 17 17 17 ARG ARG A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 LEU 21 21 21 LEU LEU A . n A 1 22 ILE 22 22 22 ILE ILE A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 ILE 25 25 25 ILE ILE A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 ALA 35 35 35 ALA ALA A . n A 1 36 TYR 36 36 36 TYR TYR A . n A 1 37 LEU 37 37 37 LEU LEU A . n A 1 38 THR 38 38 38 THR THR A . n A 1 39 TYR 39 39 39 TYR TYR A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 LYS 41 41 41 LYS LYS A . n A 1 42 LEU 42 42 42 LEU LEU A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 PRO 46 46 46 PRO PRO A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ALA 48 48 48 ALA ALA A . n A 1 49 PHE 49 49 49 PHE PHE A . n A 1 50 CYS 50 50 50 CYS CYS A . n A 1 51 THR 51 51 51 THR THR A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 ASP 53 53 ? ? ? A . n A 1 54 GLY 54 54 ? ? ? A . n A 1 55 GLY 55 55 ? ? ? A . n A 1 56 SER 56 56 56 SER SER A . n A 1 57 ASP 57 57 57 ASP ASP A . n A 1 58 LEU 58 58 58 LEU LEU A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 PHE 67 67 67 PHE PHE A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 GLY 69 69 69 GLY GLY A . n A 1 70 ILE 70 70 70 ILE ILE A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 THR 72 72 72 THR THR A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 GLY 76 76 76 GLY GLY A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLY 79 79 79 GLY GLY A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLY 82 82 82 GLY GLY A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ALA 85 85 85 ALA ALA A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 ALA 87 87 87 ALA ALA A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 ASP 91 91 ? ? ? A . n A 1 92 GLY 92 92 ? ? ? A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 PRO 94 94 94 PRO PRO A . n A 1 95 LEU 95 95 95 LEU LEU A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 LYS 97 97 97 LYS LYS A . n A 1 98 ARG 98 98 98 ARG ARG A . n A 1 99 TRP 99 99 99 TRP TRP A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 TRP 101 101 101 TRP TRP A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 GLY 106 106 106 GLY GLY A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 VAL 108 108 108 VAL VAL A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 MET 111 111 111 MET MET A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 ALA 113 113 113 ALA ALA A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 MET 116 116 116 MET MET A . n A 1 117 TYR 117 117 117 TYR TYR A . n A 1 118 MET 118 118 118 MET MET A . n A 1 119 LEU 119 119 119 LEU LEU A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 MET 122 122 122 MET MET A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 GLN 128 128 128 GLN GLN A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 CYS 130 130 130 CYS CYS A . n A 1 131 MET 131 131 131 MET MET A . n A 1 132 TYR 132 132 132 TYR TYR A . n A 1 133 CYS 133 133 133 CYS CYS A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 LEU 139 139 139 LEU LEU A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 GLY 142 142 142 GLY GLY A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 LEU 145 145 145 LEU LEU A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 THR 147 147 147 THR THR A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 LEU 149 149 149 LEU LEU A . n A 1 150 GLY 150 150 150 GLY GLY A . n A 1 151 HIS 151 151 151 HIS HIS A . n A 1 152 ARG 152 152 152 ARG ARG A . n A 1 153 TRP 153 153 153 TRP TRP A . n A 1 154 LEU 154 154 154 LEU LEU A . n A 1 155 ASP 155 155 155 ASP ASP A . n A 1 156 GLY 156 156 156 GLY GLY A . n A 1 157 GLY 157 157 157 GLY GLY A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 ALA 160 160 160 ALA ALA A . n A 1 161 PHE 161 161 161 PHE PHE A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 TYR 163 163 163 TYR TYR A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 ALA 167 167 167 ALA ALA A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 LEU 169 169 169 LEU LEU A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 LEU 171 171 171 LEU LEU A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 THR 174 174 174 THR THR A . n A 1 175 ILE 175 175 175 ILE ILE A . n A 1 176 GLY 176 176 176 GLY GLY A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 TYR 178 178 178 TYR TYR A . n A 1 179 ALA 179 179 179 ALA ALA A . n A 1 180 ASN 180 180 180 ASN ASN A . n A 1 181 GLN 181 181 181 GLN GLN A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 PRO 183 183 183 PRO PRO A . n A 1 184 PRO 184 184 184 PRO PRO A . n A 1 185 PRO 185 185 185 PRO PRO A . n A 1 186 SER 186 186 186 SER SER A . n A 1 187 PRO 187 187 187 PRO PRO A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 GLY 191 191 191 GLY GLY A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 ALA 193 193 193 ALA ALA A . n A 1 194 ALA 194 194 194 ALA ALA A . n A 1 195 HIS 195 195 195 HIS HIS A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 ARG 197 197 197 ARG ARG A . n A 1 198 GLN 198 198 198 GLN GLN A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 GLY 200 200 200 GLY GLY A . n A 1 201 GLY 201 201 201 GLY GLY A . n A 1 202 THR 202 202 202 THR THR A . n A 1 203 MET 203 203 203 MET MET A . n A 1 204 TYR 204 204 204 TYR TYR A . n A 1 205 GLY 205 205 205 GLY GLY A . n A 1 206 ALA 206 206 206 ALA ALA A . n A 1 207 TYR 207 207 207 TYR TYR A . n A 1 208 TRP 208 208 208 TRP TRP A . n A 1 209 CYS 209 209 209 CYS CYS A . n A 1 210 PRO 210 210 210 PRO PRO A . n A 1 211 HIS 211 211 211 HIS HIS A . n A 1 212 CYS 212 212 212 CYS CYS A . n A 1 213 GLN 213 213 213 GLN GLN A . n A 1 214 ASP 214 214 214 ASP ASP A . n A 1 215 GLN 215 215 215 GLN GLN A . n A 1 216 LYS 216 216 216 LYS LYS A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 LEU 218 218 218 LEU LEU A . n A 1 219 PHE 219 219 219 PHE PHE A . n A 1 220 GLY 220 220 220 GLY GLY A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 ALA 222 222 222 ALA ALA A . n A 1 223 PHE 223 223 223 PHE PHE A . n A 1 224 ASP 224 224 224 ASP ASP A . n A 1 225 GLN 225 225 225 GLN GLN A . n A 1 226 VAL 226 226 226 VAL VAL A . n A 1 227 PRO 227 227 227 PRO PRO A . n A 1 228 TYR 228 228 228 TYR TYR A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 GLU 230 230 230 GLU GLU A . n A 1 231 CYS 231 231 231 CYS CYS A . n A 1 232 SER 232 232 232 SER SER A . n A 1 233 PRO 233 233 233 PRO PRO A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 GLY 235 235 235 GLY GLY A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 GLY 237 237 237 GLY GLY A . n A 1 238 THR 238 238 238 THR THR A . n A 1 239 PRO 239 239 239 PRO PRO A . n A 1 240 GLN 240 240 240 GLN GLN A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 GLN 242 242 242 GLN GLN A . n A 1 243 GLU 243 243 243 GLU GLU A . n A 1 244 CYS 244 244 244 CYS CYS A . n A 1 245 THR 245 245 245 THR THR A . n A 1 246 GLU 246 246 246 GLU GLU A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 GLY 248 248 248 GLY GLY A . n A 1 249 ILE 249 249 249 ILE ILE A . n A 1 250 THR 250 250 250 THR THR A . n A 1 251 SER 251 251 251 SER SER A . n A 1 252 TYR 252 252 252 TYR TYR A . n A 1 253 PRO 253 253 253 PRO PRO A . n A 1 254 THR 254 254 254 THR THR A . n A 1 255 TRP 255 255 255 TRP TRP A . n A 1 256 ILE 256 256 256 ILE ILE A . n A 1 257 ILE 257 257 257 ILE ILE A . n A 1 258 ASN 258 258 258 ASN ASN A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 ARG 260 260 260 ARG ARG A . n A 1 261 THR 261 261 261 THR THR A . n A 1 262 TYR 262 262 262 TYR TYR A . n A 1 263 THR 263 263 263 THR THR A . n A 1 264 GLY 264 264 264 GLY GLY A . n A 1 265 VAL 265 265 265 VAL VAL A . n A 1 266 ARG 266 266 266 ARG ARG A . n A 1 267 SER 267 267 267 SER SER A . n A 1 268 LEU 268 268 268 LEU LEU A . n A 1 269 GLU 269 269 269 GLU GLU A . n A 1 270 ALA 270 270 270 ALA ALA A . n A 1 271 LEU 271 271 271 LEU LEU A . n A 1 272 ALA 272 272 272 ALA ALA A . n A 1 273 VAL 273 273 273 VAL VAL A . n A 1 274 ALA 274 274 274 ALA ALA A . n A 1 275 SER 275 275 275 SER SER A . n A 1 276 GLY 276 276 276 GLY GLY A . n A 1 277 TYR 277 277 277 TYR TYR A . n A 1 278 PRO 278 278 278 PRO PRO A . n A 1 279 LEU 279 279 279 LEU ALA A . n A 1 280 GLU 280 280 ? ? ? A . n A 1 281 GLU 281 281 ? ? ? A . n A 1 282 GLY 282 282 ? ? ? A . n A 1 283 ARG 283 283 ? ? ? A . n A 1 284 LEU 284 284 ? ? ? A . n A 1 285 GLU 285 285 ? ? ? A . n A 1 286 HIS 286 286 ? ? ? A . n A 1 287 HIS 287 287 ? ? ? A . n A 1 288 HIS 288 288 ? ? ? A . n A 1 289 HIS 289 289 ? ? ? A . n A 1 290 HIS 290 290 ? ? ? A . n A 1 291 HIS 291 291 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U10 1 501 501 U10 U10 A . C 3 HG 1 601 601 HG HG A . D 3 HG 1 602 602 HG HG A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-09 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2021-10-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' struct_ref_seq_dif 3 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 18.9848 50.9231 12.4686 2.2956 2.0420 1.0831 -1.3821 0.5420 0.5223 46.0780 15.2841 8.2202 0.5225 -0.4617 21.0366 0.0983 -2.9580 2.3345 0.4986 -0.7731 0.2998 -0.7482 -1.0585 0.6748 'X-RAY DIFFRACTION' 2 ? refined 40.8754 60.6022 9.7477 0.8842 1.4523 0.7540 -0.3225 -0.2123 -0.4603 -1.7365 0.7248 12.2379 -1.8275 -1.0054 2.4627 0.3586 0.1278 0.2419 -0.0183 0.6247 -0.6276 2.1193 1.0228 -0.9833 'X-RAY DIFFRACTION' 3 ? refined 50.9767 73.6483 16.0345 1.4677 1.0160 1.5180 0.1181 0.1213 -0.0426 11.9642 1.6312 2.5931 6.7598 -2.2410 -0.1647 -0.5028 1.2689 -0.6467 -0.6585 0.4053 -0.4276 -0.7538 -0.2962 0.0975 'X-RAY DIFFRACTION' 4 ? refined 32.8010 58.6327 22.6571 0.5766 0.8080 0.8180 -0.6024 -0.1120 0.1032 7.4344 2.0072 10.6069 2.4390 -1.2328 1.0314 0.1215 0.2352 -0.4932 0.2365 0.0934 0.0945 1.2643 -1.3395 -0.2149 'X-RAY DIFFRACTION' 5 ? refined 58.6703 86.0863 23.6554 0.4952 0.4649 1.1823 -0.0531 -0.0880 -0.0298 11.3340 5.3462 6.0760 3.0755 3.8060 0.2514 -0.0515 -0.6414 0.3896 0.3344 0.1206 -0.0264 -0.3433 -0.2800 -0.0691 'X-RAY DIFFRACTION' 6 ? refined 73.3649 85.0948 29.9074 0.6581 0.6086 1.4950 -0.2099 -0.2752 -0.0166 23.6889 4.4377 16.4774 -10.9828 3.9082 1.5919 -1.6816 -0.2654 1.4188 0.7164 0.0549 -0.3331 0.9752 -0.6750 1.6267 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 A 16 ? ? A 20 ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 21 ? ? A 44 ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 45 ? ? A 70 ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 71 ? ? A 177 ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 178 ? ? A 272 ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 273 ? ? A 279 ? ? ? ? # _software.name REFMAC _software.classification refinement _software.version 5.5.0102 _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 TYR _pdbx_validate_rmsd_angle.auth_seq_id_1 252 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 253 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 253 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 115.21 _pdbx_validate_rmsd_angle.angle_target_value 128.40 _pdbx_validate_rmsd_angle.angle_deviation -13.19 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 17 ? ? -124.85 -107.23 2 1 GLU A 44 ? ? -31.16 136.41 3 1 ALA A 48 ? ? -100.45 -60.38 4 1 CYS A 50 ? ? -140.49 59.13 5 1 THR A 51 ? ? -43.89 154.36 6 1 SER A 62 ? ? -76.20 -161.36 7 1 TRP A 64 ? ? 81.10 -43.44 8 1 LEU A 95 ? ? 95.23 -42.92 9 1 LYS A 97 ? ? -94.01 -68.20 10 1 ARG A 152 ? ? 44.52 72.44 11 1 ASP A 155 ? ? 48.90 77.96 12 1 PRO A 227 ? ? -56.28 107.23 13 1 PRO A 239 ? ? -36.39 132.00 14 1 TYR A 252 ? ? -119.26 57.49 15 1 ASN A 258 ? ? 60.86 67.81 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 TYR _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 252 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 253 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 119.79 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LEU 279 ? CG ? A LEU 279 CG 2 1 Y 1 A LEU 279 ? CD1 ? A LEU 279 CD1 3 1 Y 1 A LEU 279 ? CD2 ? A LEU 279 CD2 4 1 N 1 A U10 501 ? C27 ? B U10 1 C27 5 1 N 1 A U10 501 ? C28 ? B U10 1 C28 6 1 N 1 A U10 501 ? C29 ? B U10 1 C29 7 1 N 1 A U10 501 ? C30 ? B U10 1 C30 8 1 N 1 A U10 501 ? C31 ? B U10 1 C31 9 1 N 1 A U10 501 ? C32 ? B U10 1 C32 10 1 N 1 A U10 501 ? C33 ? B U10 1 C33 11 1 N 1 A U10 501 ? C34 ? B U10 1 C34 12 1 N 1 A U10 501 ? C35 ? B U10 1 C35 13 1 N 1 A U10 501 ? C36 ? B U10 1 C36 14 1 N 1 A U10 501 ? C37 ? B U10 1 C37 15 1 N 1 A U10 501 ? C38 ? B U10 1 C38 16 1 N 1 A U10 501 ? C39 ? B U10 1 C39 17 1 N 1 A U10 501 ? C40 ? B U10 1 C40 18 1 N 1 A U10 501 ? C41 ? B U10 1 C41 19 1 N 1 A U10 501 ? C42 ? B U10 1 C42 20 1 N 1 A U10 501 ? C43 ? B U10 1 C43 21 1 N 1 A U10 501 ? C44 ? B U10 1 C44 22 1 N 1 A U10 501 ? C45 ? B U10 1 C45 23 1 N 1 A U10 501 ? C46 ? B U10 1 C46 24 1 N 1 A U10 501 ? C47 ? B U10 1 C47 25 1 N 1 A U10 501 ? C48 ? B U10 1 C48 26 1 N 1 A U10 501 ? C49 ? B U10 1 C49 27 1 N 1 A U10 501 ? C50 ? B U10 1 C50 28 1 N 1 A U10 501 ? C51 ? B U10 1 C51 29 1 N 1 A U10 501 ? C52 ? B U10 1 C52 30 1 N 1 A U10 501 ? C53 ? B U10 1 C53 31 1 N 1 A U10 501 ? C54 ? B U10 1 C54 32 1 N 1 A U10 501 ? C55 ? B U10 1 C55 33 1 N 1 A U10 501 ? C56 ? B U10 1 C56 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 3 1 Y 1 A SER 3 ? A SER 3 4 1 Y 1 A TYR 4 ? A TYR 4 5 1 Y 1 A LEU 5 ? A LEU 5 6 1 Y 1 A LYS 6 ? A LYS 6 7 1 Y 1 A LEU 7 ? A LEU 7 8 1 Y 1 A LYS 8 ? A LYS 8 9 1 Y 1 A ALA 9 ? A ALA 9 10 1 Y 1 A GLN 10 ? A GLN 10 11 1 Y 1 A GLU 11 ? A GLU 11 12 1 Y 1 A GLU 12 ? A GLU 12 13 1 Y 1 A THR 13 ? A THR 13 14 1 Y 1 A TRP 14 ? A TRP 14 15 1 Y 1 A LEU 15 ? A LEU 15 16 1 Y 1 A ASP 53 ? A ASP 53 17 1 Y 1 A GLY 54 ? A GLY 54 18 1 Y 1 A GLY 55 ? A GLY 55 19 1 Y 1 A ASP 91 ? A ASP 91 20 1 Y 1 A GLY 92 ? A GLY 92 21 1 Y 1 A GLU 280 ? A GLU 280 22 1 Y 1 A GLU 281 ? A GLU 281 23 1 Y 1 A GLY 282 ? A GLY 282 24 1 Y 1 A ARG 283 ? A ARG 283 25 1 Y 1 A LEU 284 ? A LEU 284 26 1 Y 1 A GLU 285 ? A GLU 285 27 1 Y 1 A HIS 286 ? A HIS 286 28 1 Y 1 A HIS 287 ? A HIS 287 29 1 Y 1 A HIS 288 ? A HIS 288 30 1 Y 1 A HIS 289 ? A HIS 289 31 1 Y 1 A HIS 290 ? A HIS 290 32 1 Y 1 A HIS 291 ? A HIS 291 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 UBIQUINONE-10 U10 3 'MERCURY (II) ION' HG #