HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 17-NOV-09 3KQ5 TITLE CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM COXIELLA BURNETII COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL CYTOSOLIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: COXIELLA BURNETII; SOURCE 3 ORGANISM_TAXID: 777; SOURCE 4 GENE: CBU_0560; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.FREEMAN,K.T.BAIN,S.CHANG,S.OZYURT,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 21-FEB-24 3KQ5 1 REMARK REVDAT 5 10-FEB-21 3KQ5 1 AUTHOR JRNL SEQADV REVDAT 4 21-NOV-18 3KQ5 1 AUTHOR REVDAT 3 01-NOV-17 3KQ5 1 REMARK REVDAT 2 13-JUL-11 3KQ5 1 VERSN REVDAT 1 08-DEC-09 3KQ5 0 JRNL AUTH J.B.BONANNO,M.FREEMAN,K.T.BAIN,S.CHANG,S.OZYURT,S.WASSERMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN FROM JRNL TITL 2 COXIELLA BURNETII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 3 NUMBER OF REFLECTIONS : 25927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1299 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1802 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.75 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 89 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2834 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.73000 REMARK 3 B22 (A**2) : 3.82000 REMARK 3 B33 (A**2) : -1.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.187 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.157 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.766 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2943 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1959 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4011 ; 1.563 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4792 ; 1.023 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 367 ; 5.581 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.822 ;24.370 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 476 ;15.493 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;21.417 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 454 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3267 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 602 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1813 ; 0.829 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 725 ; 0.232 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2918 ; 1.493 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1130 ; 2.412 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1087 ; 3.845 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5060 -6.2010 3.4710 REMARK 3 T TENSOR REMARK 3 T11: 0.0850 T22: 0.0299 REMARK 3 T33: 0.0856 T12: -0.0064 REMARK 3 T13: -0.0041 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 0.5293 L22: 0.0232 REMARK 3 L33: 0.5994 L12: 0.0305 REMARK 3 L13: -0.0050 L23: -0.0533 REMARK 3 S TENSOR REMARK 3 S11: 0.0346 S12: 0.0026 S13: 0.0233 REMARK 3 S21: 0.0033 S22: -0.0087 S23: 0.0241 REMARK 3 S31: 0.0250 S32: -0.0562 S33: -0.0258 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 333 REMARK 3 RESIDUE RANGE : A 362 A 388 REMARK 3 ORIGIN FOR THE GROUP (A): -2.2370 -1.4360 34.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.1106 T22: 0.1539 REMARK 3 T33: 0.0212 T12: -0.0627 REMARK 3 T13: 0.0289 T23: -0.0366 REMARK 3 L TENSOR REMARK 3 L11: 1.5062 L22: 2.3112 REMARK 3 L33: 2.0853 L12: 1.1002 REMARK 3 L13: -0.4232 L23: -1.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.2565 S12: -0.3696 S13: 0.1055 REMARK 3 S21: 0.2861 S22: -0.0891 S23: 0.1522 REMARK 3 S31: -0.2955 S32: 0.1828 S33: -0.1675 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 334 A 361 REMARK 3 ORIGIN FOR THE GROUP (A): 14.7080 6.3390 48.9810 REMARK 3 T TENSOR REMARK 3 T11: 0.1428 T22: 0.3120 REMARK 3 T33: 0.3622 T12: 0.0319 REMARK 3 T13: -0.1530 T23: -0.1417 REMARK 3 L TENSOR REMARK 3 L11: 1.7328 L22: 0.3360 REMARK 3 L33: 13.5956 L12: 0.1055 REMARK 3 L13: -3.8369 L23: -0.7420 REMARK 3 S TENSOR REMARK 3 S11: -0.1064 S12: 0.4382 S13: -0.3482 REMARK 3 S21: -0.2043 S22: -0.0077 S23: 0.2803 REMARK 3 S31: 0.6255 S32: -0.0682 S33: 0.1141 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KQ5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25952 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.245 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.45200 REMARK 200 R SYM FOR SHELL (I) : 0.45200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD, MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS PH 6.5, 28% PEG 3350, REMARK 280 200MM AMMONIUM ACETATE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.12250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.68750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.12250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.68750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 THR A 10 REMARK 465 SER A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 211 REMARK 465 GLY A 212 REMARK 465 GLU A 213 REMARK 465 GLY A 214 REMARK 465 GLY A 215 REMARK 465 SER A 335 REMARK 465 GLU A 336 REMARK 465 TYR A 337 REMARK 465 PRO A 338 REMARK 465 ILE A 353 REMARK 465 GLY A 354 REMARK 465 ILE A 355 REMARK 465 ARG A 356 REMARK 465 ARG A 357 REMARK 465 ALA A 358 REMARK 465 SER A 384 REMARK 465 SER A 389 REMARK 465 SER A 390 REMARK 465 ALA A 391 REMARK 465 GLN A 392 REMARK 465 LYS A 393 REMARK 465 SER A 394 REMARK 465 GLN A 395 REMARK 465 ASN A 396 REMARK 465 ILE A 397 REMARK 465 PRO A 398 REMARK 465 MET A 399 REMARK 465 THR A 400 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 GLU A 52 CG CD OE1 OE2 REMARK 470 GLU A 188 CG CD OE1 OE2 REMARK 470 ASP A 210 CG OD1 OD2 REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 LYS A 270 CG CD CE NZ REMARK 470 SER A 274 OG REMARK 470 ASP A 275 CG OD1 OD2 REMARK 470 LEU A 299 CG CD1 CD2 REMARK 470 VAL A 301 CG1 CG2 REMARK 470 ASN A 302 CG OD1 ND2 REMARK 470 ASP A 339 CG OD1 OD2 REMARK 470 SER A 359 OG REMARK 470 THR A 361 OG1 CG2 REMARK 470 ARG A 376 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 378 CG CD OE1 OE2 REMARK 470 THR A 383 OG1 CG2 REMARK 470 TYR A 385 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 386 CG CD1 CD2 REMARK 470 LYS A 387 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 90 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 70 -136.12 46.40 REMARK 500 CYS A 81 -0.37 70.87 REMARK 500 SER A 166 174.51 -55.71 REMARK 500 ASP A 209 -130.11 54.55 REMARK 500 ASN A 272 -6.57 80.30 REMARK 500 HIS A 300 71.23 -107.28 REMARK 500 ARG A 376 28.81 -144.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IPQ RELATED DB: PDB REMARK 900 RELATED ID: NYSGXRC-10172E RELATED DB: TARGETDB DBREF 3KQ5 A 10 400 UNP Q83DY0 Q83DY0_COXBU 10 400 SEQADV 3KQ5 SER A 8 UNP Q83DY0 EXPRESSION TAG SEQADV 3KQ5 LEU A 9 UNP Q83DY0 EXPRESSION TAG SEQRES 1 A 393 SER LEU THR SER LYS ASN GLN PHE TYR LYS PRO GLY MET SEQRES 2 A 393 LEU VAL PRO VAL PHE SER ALA ALA GLY LEU LEU LYS ASN SEQRES 3 A 393 GLY ARG TYR GLN PHE LEU LEU GLN GLN ILE GLU THR LEU SEQRES 4 A 393 SER LEU LEU PRO THR GLU GLN TYR ALA GLN LEU TYR GLU SEQRES 5 A 393 ALA LEU VAL TYR ARG PHE VAL GLU PHE VAL GLN VAL LEU SEQRES 6 A 393 PRO ILE ARG LEU ASP GLU PRO LEU CYS SER LEU MET ASN SEQRES 7 A 393 GLU GLY LEU LEU ARG GLY VAL ASN SER LEU ASN HIS TYR SEQRES 8 A 393 ILE GLN ASN HIS PRO GLU ALA THR PRO LEU GLU ARG TYR SEQRES 9 A 393 ALA LEU PHE SER ALA GLY LEU LEU LEU GLU VAL ALA HIS SEQRES 10 A 393 ALA VAL VAL ASN GLN LYS ILE PHE ILE THR ASP GLU GLU SEQRES 11 A 393 GLY ASN PHE ILE LYS GLN TRP ASN PRO PHE SER GLY PRO SEQRES 12 A 393 LEU ILE ASP ASP VAL GLU THR LYS HIS TYR LYS ILE MET SEQRES 13 A 393 PRO LEU SER SER TYR TYR GLN ARG ASN ILE PRO SER ILE SEQRES 14 A 393 THR PRO ILE LEU VAL ARG GLN LEU LEU PRO ASP GLU GLY SEQRES 15 A 393 PHE LEU TRP LEU THR SER ASP MET ARG VAL PHE SER ASP SEQRES 16 A 393 TRP MET GLN ALA LEU ARG ASP ASP GLU GLY GLU GLY GLY SEQRES 17 A 393 GLY ARG PHE GLU HIS VAL LEU GLN LEU PHE LYS HIS LYS SEQRES 18 A 393 ASN ILE ASP GLY LEU PHE ASN THR LEU PRO ALA LEU PRO SEQRES 19 A 393 VAL ASN LEU GLN ASP SER PRO ALA THR ALA HIS ALA ASP SEQRES 20 A 393 ALA PHE LEU ASN TRP LEU LYS GLU ALA LEU ALA THR ASN SEQRES 21 A 393 GLN ILE LYS VAL ASN THR SER ASP ALA GLY VAL HIS VAL SEQRES 22 A 393 ILE PRO GLU GLY VAL PHE LEU GLU LYS THR GLY ILE PHE SEQRES 23 A 393 LYS GLN TYR ILE ASP LEU HIS VAL ASN VAL PRO VAL ASN SEQRES 24 A 393 LEU PHE THR VAL TYR GLN GLN PHE GLY ASN LEU PHE GLY SEQRES 25 A 393 LEU THR LYS LEU SER GLY ILE ASP TYR ARG PHE GLU GLN SEQRES 26 A 393 LEU PHE SER GLU TYR PRO ASP ALA LEU LYS ARG LYS SER SEQRES 27 A 393 LYS MET GLY PHE ALA GLY LEU ILE GLY ILE ARG ARG ALA SEQRES 28 A 393 SER PRO THR ARG GLU GLY VAL LEU ILE ALA ASP PRO ASN SEQRES 29 A 393 LEU ILE PHE THR ARG GLY GLU ILE PRO SER ALA THR SER SEQRES 30 A 393 TYR LEU LYS LEU SER SER ALA GLN LYS SER GLN ASN ILE SEQRES 31 A 393 PRO MET THR FORMUL 2 HOH *91(H2 O) HELIX 1 1 SER A 26 LEU A 31 1 6 HELIX 2 2 ASN A 33 LEU A 48 1 16 HELIX 3 3 PRO A 50 TYR A 58 1 9 HELIX 4 4 TYR A 58 GLN A 70 1 13 HELIX 5 5 CYS A 81 HIS A 102 1 22 HELIX 6 6 THR A 106 LEU A 120 1 15 HELIX 7 7 ALA A 123 ASN A 128 1 6 HELIX 8 8 ASN A 145 GLY A 149 5 5 HELIX 9 9 PRO A 150 ASP A 154 5 5 HELIX 10 10 SER A 166 ARG A 171 5 6 HELIX 11 11 ASN A 172 LEU A 185 1 14 HELIX 12 12 PRO A 186 SER A 195 1 10 HELIX 13 13 ASP A 196 LEU A 207 1 12 HELIX 14 14 PHE A 218 HIS A 227 1 10 HELIX 15 15 SER A 247 ALA A 249 5 3 HELIX 16 16 THR A 250 THR A 266 1 17 HELIX 17 17 GLY A 291 HIS A 300 1 10 HELIX 18 18 ASN A 306 PHE A 318 1 13 HELIX 19 19 ASP A 339 GLY A 348 1 10 HELIX 20 20 ASP A 369 ILE A 373 5 5 SHEET 1 A 4 VAL A 22 PRO A 23 0 SHEET 2 A 4 HIS A 159 PRO A 164 -1 O TYR A 160 N VAL A 22 SHEET 3 A 4 GLN A 129 THR A 134 -1 N LYS A 130 O MET A 163 SHEET 4 A 4 PHE A 140 GLN A 143 -1 O ILE A 141 N ILE A 133 SHEET 1 B 4 VAL A 278 ILE A 281 0 SHEET 2 B 4 GLY A 284 GLU A 288 -1 O PHE A 286 N HIS A 279 SHEET 3 B 4 ARG A 362 ILE A 367 -1 O ILE A 367 N VAL A 285 SHEET 4 B 4 TYR A 328 LEU A 333 -1 N ARG A 329 O LEU A 366 CRYST1 124.245 41.375 85.401 90.00 115.61 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008049 0.000000 0.003857 0.00000 SCALE2 0.000000 0.024169 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012985 0.00000