HEADER TRANSFERASE 18-NOV-09 3KR8 TITLE HUMAN TANKYRASE 2 - CATALYTIC PARP DOMAIN IN COMPLEX WITH AN INHIBITOR TITLE 2 XAV939 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TANKYRASE-2; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN; COMPND 5 SYNONYM: TANK2, TANKYRASE II, TNKS-2, TRF1-INTERACTING ANKYRIN- COMPND 6 RELATED ADP-RIBOSE POLYMERASE 2, TANKYRASE-LIKE PROTEIN, TANKYRASE- COMPND 7 RELATED PROTEIN; COMPND 8 EC: 2.4.2.30; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP5B, TANK2, TNKL, TNKS2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) R3 PRARE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC-BSA4 KEYWDS CATALYTIC FRAGMENT, PARP, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 2 CONSORTIUM, SGC, ADP-RIBOSYLATION, ANK REPEAT, CHROMOSOMAL PROTEIN, KEYWDS 3 GLYCOSYLTRANSFERASE, GOLGI APPARATUS, MEMBRANE, MRNA TRANSPORT, NAD, KEYWDS 4 NUCLEAR PORE COMPLEX, NUCLEUS, PHOSPHORYLATION, PROTEIN TRANSPORT, KEYWDS 5 TELOMERE, TRANSFERASE, TRANSLOCATION, TRANSPORT, WNT-SIGNALLING, KEYWDS 6 XAV939 EXPDTA X-RAY DIFFRACTION AUTHOR T.KARLBERG,P.SCHUTZ,C.H.ARROWSMITH,H.BERGLUND,C.BOUNTRA,R.COLLINS, AUTHOR 2 A.M.EDWARDS,S.FLODIN,A.FLORES,S.GRASLUND,M.HAMMARSTROM,A.JOHANSSON, AUTHOR 3 I.JOHANSSON,A.KALLAS,T.KOTENYOVA,A.KOTZSCH,P.KRAULIS,T.K.NIELSEN, AUTHOR 4 M.MOCHE,P.NORDLUND,T.NYMAN,C.PERSSON,M.I.SIPONEN,A.G.THORSELL, AUTHOR 5 L.TRESAUGUES,S.VAN DEN BERG,J.WEIGELT,M.WELIN,M.WISNIEWSKA, AUTHOR 6 H.SCHULER,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 4 01-NOV-23 3KR8 1 REMARK SEQADV LINK REVDAT 3 13-JUL-11 3KR8 1 VERSN REVDAT 2 08-SEP-10 3KR8 1 JRNL REVDAT 1 15-DEC-09 3KR8 0 JRNL AUTH T.KARLBERG,N.MARKOVA,I.JOHANSSON,M.HAMMARSTROM,P.SCHUTZ, JRNL AUTH 2 J.WEIGELT,H.SCHULER JRNL TITL STRUCTURAL BASIS FOR THE INTERACTION BETWEEN TANKYRASE-2 AND JRNL TITL 2 A POTENT WNT-SIGNALING INHIBITOR. JRNL REF J.MED.CHEM. V. 53 5352 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20565110 JRNL DOI 10.1021/JM100249W REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29779 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1571 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2135 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.3160 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3322 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 76 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.67000 REMARK 3 B33 (A**2) : 0.78000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.215 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.194 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.136 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.131 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3480 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2408 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4690 ; 1.562 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5762 ; 0.885 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 410 ; 6.424 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 180 ;32.883 ;22.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 566 ;14.539 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;17.710 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 462 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3890 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 764 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2040 ; 0.905 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 852 ; 0.226 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3264 ; 1.629 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1440 ; 2.425 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1426 ; 3.806 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 0 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 2842 ; 0.39 ; 5.00 REMARK 3 LOOSE THERMAL 1 C (A**2): 2842 ; 2.40 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KR8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54187 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31809 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : 0.13200 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.41900 REMARK 200 R SYM FOR SHELL (I) : 0.31400 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3KR7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 17% PEG 3350, 0.2M AMMONIUMSULFATE, REMARK 280 0.1M TRIS, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.73200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.73200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.98750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.98750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.73200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.37500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.98750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.73200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.37500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.98750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 923 REMARK 465 HIS A 924 REMARK 465 HIS A 925 REMARK 465 HIS A 926 REMARK 465 HIS A 927 REMARK 465 HIS A 928 REMARK 465 HIS A 929 REMARK 465 SER A 930 REMARK 465 SER A 931 REMARK 465 GLY A 932 REMARK 465 VAL A 933 REMARK 465 ASP A 934 REMARK 465 LEU A 935 REMARK 465 GLY A 936 REMARK 465 THR A 937 REMARK 465 GLU A 938 REMARK 465 ASN A 939 REMARK 465 LEU A 940 REMARK 465 TYR A 941 REMARK 465 PHE A 942 REMARK 465 GLN A 943 REMARK 465 SER A 944 REMARK 465 MET A 945 REMARK 465 LEU A 946 REMARK 465 ASN A 947 REMARK 465 THR A 948 REMARK 465 SER A 949 REMARK 465 GLY A 950 REMARK 465 SER A 951 REMARK 465 ALA A 1112 REMARK 465 MET A 1113 REMARK 465 LYS A 1114 REMARK 465 MET A 1115 REMARK 465 GLY A 1162 REMARK 465 MET C 923 REMARK 465 HIS C 924 REMARK 465 HIS C 925 REMARK 465 HIS C 926 REMARK 465 HIS C 927 REMARK 465 HIS C 928 REMARK 465 HIS C 929 REMARK 465 SER C 930 REMARK 465 SER C 931 REMARK 465 GLY C 932 REMARK 465 VAL C 933 REMARK 465 ASP C 934 REMARK 465 LEU C 935 REMARK 465 GLY C 936 REMARK 465 THR C 937 REMARK 465 GLU C 938 REMARK 465 ASN C 939 REMARK 465 LEU C 940 REMARK 465 TYR C 941 REMARK 465 PHE C 942 REMARK 465 GLN C 943 REMARK 465 SER C 944 REMARK 465 MET C 945 REMARK 465 LEU C 946 REMARK 465 ASN C 947 REMARK 465 THR C 948 REMARK 465 SER C 949 REMARK 465 GLY C 950 REMARK 465 SER C 951 REMARK 465 LYS C 1114 REMARK 465 MET C 1115 REMARK 465 GLY C 1162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET C1113 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 962 O HOH C 214 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A1020 52.03 -142.64 REMARK 500 PRO A1120 132.08 -34.43 REMARK 500 VAL A1131 -65.43 -143.98 REMARK 500 ASN C1002 105.81 -160.10 REMARK 500 SER C1033 145.11 -170.21 REMARK 500 ALA C1057 92.58 -65.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1081 SG REMARK 620 2 HIS A1084 ND1 109.1 REMARK 620 3 CYS A1089 SG 116.1 97.4 REMARK 620 4 CYS A1092 SG 119.7 103.6 107.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 1 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C1081 SG REMARK 620 2 HIS C1084 ND1 106.6 REMARK 620 3 CYS C1089 SG 110.2 107.5 REMARK 620 4 CYS C1092 SG 120.1 101.7 109.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XAV A 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE XAV C 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 11 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KR7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN APO FORM DBREF 3KR8 A 946 1162 UNP Q9H2K2 TNKS2_HUMAN 946 1162 DBREF 3KR8 C 946 1162 UNP Q9H2K2 TNKS2_HUMAN 946 1162 SEQADV 3KR8 MET A 923 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS A 924 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS A 925 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS A 926 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS A 927 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS A 928 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS A 929 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 SER A 930 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 SER A 931 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 GLY A 932 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 VAL A 933 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 ASP A 934 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 LEU A 935 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 GLY A 936 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 THR A 937 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 GLU A 938 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 ASN A 939 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 LEU A 940 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 TYR A 941 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 PHE A 942 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 GLN A 943 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 SER A 944 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 MET A 945 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 MET C 923 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS C 924 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS C 925 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS C 926 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS C 927 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS C 928 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 HIS C 929 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 SER C 930 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 SER C 931 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 GLY C 932 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 VAL C 933 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 ASP C 934 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 LEU C 935 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 GLY C 936 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 THR C 937 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 GLU C 938 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 ASN C 939 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 LEU C 940 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 TYR C 941 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 PHE C 942 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 GLN C 943 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 SER C 944 UNP Q9H2K2 EXPRESSION TAG SEQADV 3KR8 MET C 945 UNP Q9H2K2 EXPRESSION TAG SEQRES 1 A 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 240 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ASN THR SEQRES 3 A 240 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP SEQRES 4 A 240 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 5 A 240 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY SEQRES 6 A 240 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL SEQRES 7 A 240 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG SEQRES 8 A 240 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU SEQRES 9 A 240 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE SEQRES 10 A 240 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 11 A 240 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 12 A 240 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 13 A 240 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE SEQRES 14 A 240 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY SEQRES 15 A 240 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS SEQRES 16 A 240 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER SEQRES 17 A 240 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG SEQRES 18 A 240 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 19 A 240 ILE MET ARG PRO GLU GLY SEQRES 1 C 240 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 240 GLY THR GLU ASN LEU TYR PHE GLN SER MET LEU ASN THR SEQRES 3 C 240 SER GLY SER GLY THR ILE LEU ILE ASP LEU SER PRO ASP SEQRES 4 C 240 ASP LYS GLU PHE GLN SER VAL GLU GLU GLU MET GLN SER SEQRES 5 C 240 THR VAL ARG GLU HIS ARG ASP GLY GLY HIS ALA GLY GLY SEQRES 6 C 240 ILE PHE ASN ARG TYR ASN ILE LEU LYS ILE GLN LYS VAL SEQRES 7 C 240 CYS ASN LYS LYS LEU TRP GLU ARG TYR THR HIS ARG ARG SEQRES 8 C 240 LYS GLU VAL SER GLU GLU ASN HIS ASN HIS ALA ASN GLU SEQRES 9 C 240 ARG MET LEU PHE HIS GLY SER PRO PHE VAL ASN ALA ILE SEQRES 10 C 240 ILE HIS LYS GLY PHE ASP GLU ARG HIS ALA TYR ILE GLY SEQRES 11 C 240 GLY MET PHE GLY ALA GLY ILE TYR PHE ALA GLU ASN SER SEQRES 12 C 240 SER LYS SER ASN GLN TYR VAL TYR GLY ILE GLY GLY GLY SEQRES 13 C 240 THR GLY CYS PRO VAL HIS LYS ASP ARG SER CYS TYR ILE SEQRES 14 C 240 CYS HIS ARG GLN LEU LEU PHE CYS ARG VAL THR LEU GLY SEQRES 15 C 240 LYS SER PHE LEU GLN PHE SER ALA MET LYS MET ALA HIS SEQRES 16 C 240 SER PRO PRO GLY HIS HIS SER VAL THR GLY ARG PRO SER SEQRES 17 C 240 VAL ASN GLY LEU ALA LEU ALA GLU TYR VAL ILE TYR ARG SEQRES 18 C 240 GLY GLU GLN ALA TYR PRO GLU TYR LEU ILE THR TYR GLN SEQRES 19 C 240 ILE MET ARG PRO GLU GLY HET ZN A 1 1 HET XAV A1163 21 HET SO4 A 2 5 HET SO4 A 4 5 HET GOL A 10 6 HET ZN C 1 1 HET XAV C1163 21 HET SO4 C1164 5 HET SO4 C 3 5 HET GOL C 11 6 HETNAM ZN ZINC ION HETNAM XAV 2-[4-(TRIFLUOROMETHYL)PHENYL]-7,8-DIHYDRO-5H- HETNAM 2 XAV THIOPYRANO[4,3-D]PYRIMIDIN-4-OL HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 XAV 2(C14 H11 F3 N2 O S) FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 13 HOH *369(H2 O) HELIX 1 1 ASP A 962 THR A 975 1 14 HELIX 2 2 ASN A 1002 GLU A 1019 1 18 HELIX 3 3 PHE A 1035 GLY A 1043 1 9 HELIX 4 4 ASP A 1045 ALA A 1049 5 5 HELIX 5 5 ASN A 1064 GLN A 1070 1 7 HELIX 6 6 GLY A 1074 GLY A 1078 5 5 HELIX 7 7 ARG A 1143 GLU A 1145 5 3 HELIX 8 8 ASP C 962 THR C 975 1 14 HELIX 9 9 ASN C 1002 ASN C 1020 1 19 HELIX 10 10 PHE C 1035 GLY C 1043 1 9 HELIX 11 11 ASP C 1045 ALA C 1049 5 5 HELIX 12 12 ASN C 1064 GLN C 1070 1 7 HELIX 13 13 GLY C 1074 GLY C 1078 5 5 HELIX 14 14 ARG C 1143 GLU C 1145 5 3 SHEET 1 A 5 ILE A 954 ASP A 957 0 SHEET 2 A 5 TYR A 992 CYS A1001 -1 O CYS A1001 N ILE A 954 SHEET 3 A 5 ALA A1147 ILE A1157 -1 O THR A1154 N LYS A 996 SHEET 4 A 5 ARG A1094 THR A1102 -1 N ARG A1094 O TYR A1155 SHEET 5 A 5 GLU A1026 HIS A1031 -1 N LEU A1029 O CYS A1099 SHEET 1 B 4 ILE A1059 ALA A1062 0 SHEET 2 B 4 GLU A1138 ILE A1141 -1 O TYR A1139 N PHE A1061 SHEET 3 B 4 SER A1124 PRO A1129 -1 N GLY A1127 O GLU A1138 SHEET 4 B 4 SER A1106 SER A1111 1 N GLN A1109 O ARG A1128 SHEET 1 C 5 ILE C 954 ASP C 957 0 SHEET 2 C 5 TYR C 992 CYS C1001 -1 O CYS C1001 N ILE C 954 SHEET 3 C 5 ALA C1147 ILE C1157 -1 O GLU C1150 N VAL C1000 SHEET 4 C 5 ARG C1094 THR C1102 -1 N ARG C1094 O TYR C1155 SHEET 5 C 5 GLU C1026 HIS C1031 -1 N HIS C1031 O LEU C1097 SHEET 1 D 4 ILE C1059 ALA C1062 0 SHEET 2 D 4 GLU C1138 ILE C1141 -1 O TYR C1139 N PHE C1061 SHEET 3 D 4 SER C1124 PRO C1129 -1 N GLY C1127 O GLU C1138 SHEET 4 D 4 SER C1106 SER C1111 1 N GLN C1109 O THR C1126 LINK ZN ZN A 1 SG CYS A1081 1555 1555 2.30 LINK ZN ZN A 1 ND1 HIS A1084 1555 1555 2.14 LINK ZN ZN A 1 SG CYS A1089 1555 1555 2.35 LINK ZN ZN A 1 SG CYS A1092 1555 1555 2.48 LINK ZN ZN C 1 SG CYS C1081 1555 1555 2.29 LINK ZN ZN C 1 ND1 HIS C1084 1555 1555 2.20 LINK ZN ZN C 1 SG CYS C1089 1555 1555 2.30 LINK ZN ZN C 1 SG CYS C1092 1555 1555 2.31 SITE 1 AC1 4 CYS A1081 HIS A1084 CYS A1089 CYS A1092 SITE 1 AC2 15 GOL A 10 HOH A 332 HIS A1031 GLY A1032 SITE 2 AC2 15 PRO A1034 PHE A1035 ALA A1049 TYR A1050 SITE 3 AC2 15 TYR A1060 PHE A1061 ALA A1062 SER A1068 SITE 4 AC2 15 TYR A1071 ILE A1075 GLU A1138 SITE 1 AC3 7 HOH A 114 HOH A 140 HOH A 241 ARG A 977 SITE 2 AC3 7 HIS A 979 ARG A 980 LYS A1067 SITE 1 AC4 6 HOH A 153 HOH A 199 ASN A 990 ARG A 991 SITE 2 AC4 6 PRO A1160 GLU A1161 SITE 1 AC5 8 HOH A 364 TYR A1050 GLY A1053 MET A1054 SITE 2 AC5 8 PHE A1055 TYR A1060 GLU A1138 XAV A1163 SITE 1 AC6 4 CYS C1081 HIS C1084 CYS C1089 CYS C1092 SITE 1 AC7 14 GOL C 11 HOH C 188 HIS C1031 GLY C1032 SITE 2 AC7 14 PHE C1035 ALA C1049 TYR C1050 TYR C1060 SITE 3 AC7 14 PHE C1061 ALA C1062 SER C1068 TYR C1071 SITE 4 AC7 14 ILE C1075 GLU C1138 SITE 1 AC8 6 HOH C 178 ARG C 977 HIS C 979 ARG C 980 SITE 2 AC8 6 LYS C1067 GLN C1070 SITE 1 AC9 5 HOH C 73 ASN C 990 ARG C 991 PRO C1160 SITE 2 AC9 5 GLU C1161 SITE 1 BC1 8 HOH A 142 HOH C 176 TYR C1050 MET C1054 SITE 2 BC1 8 PHE C1055 TYR C1060 GLU C1138 XAV C1163 CRYST1 90.750 97.975 119.464 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011019 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008371 0.00000