data_3KR9 # _entry.id 3KR9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3KR9 RCSB RCSB056347 WWPDB D_1000056347 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3KU1 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 3KR9 _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2009-11-18 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ta, M.H.' 1 'Kim, K.K.' 2 # _citation.id primary _citation.title ;Crystal structure of Streptococcus pneumoniae Sp1610, a putative tRNA (m1A22) methyltransferase in complex with S-adenosyl-L-methionine ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ta, M.H.' 1 primary 'Kim, K.K.' 2 # _cell.entry_id 3KR9 _cell.length_a 35.807 _cell.length_b 58.668 _cell.length_c 142.995 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KR9 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'SAM-dependent methyltransferase' 24965.746 1 2.1.1.36 ? ? ? 2 water nat water 18.015 185 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'putative tRNA (m1A22) methyltransferase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MISKRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE ETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQM KLSASDVRFGPFLSKEVSPVFVQKWQKEAEKLEFALGQIPEKNLEERQVLVDKIQAIKEVLHVSK ; _entity_poly.pdbx_seq_one_letter_code_can ;MISKRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE ETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQM KLSASDVRFGPFLSKEVSPVFVQKWQKEAEKLEFALGQIPEKNLEERQVLVDKIQAIKEVLHVSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 SER n 1 4 LYS n 1 5 ARG n 1 6 LEU n 1 7 GLU n 1 8 LEU n 1 9 VAL n 1 10 ALA n 1 11 SER n 1 12 PHE n 1 13 VAL n 1 14 SER n 1 15 GLN n 1 16 GLY n 1 17 ALA n 1 18 ILE n 1 19 LEU n 1 20 LEU n 1 21 ASP n 1 22 VAL n 1 23 GLY n 1 24 SER n 1 25 ASP n 1 26 HIS n 1 27 ALA n 1 28 TYR n 1 29 LEU n 1 30 PRO n 1 31 ILE n 1 32 GLU n 1 33 LEU n 1 34 VAL n 1 35 GLU n 1 36 ARG n 1 37 GLY n 1 38 GLN n 1 39 ILE n 1 40 LYS n 1 41 SER n 1 42 ALA n 1 43 ILE n 1 44 ALA n 1 45 GLY n 1 46 GLU n 1 47 VAL n 1 48 VAL n 1 49 GLU n 1 50 GLY n 1 51 PRO n 1 52 TYR n 1 53 GLN n 1 54 SER n 1 55 ALA n 1 56 VAL n 1 57 LYS n 1 58 ASN n 1 59 VAL n 1 60 GLU n 1 61 ALA n 1 62 HIS n 1 63 GLY n 1 64 LEU n 1 65 LYS n 1 66 GLU n 1 67 LYS n 1 68 ILE n 1 69 GLN n 1 70 VAL n 1 71 ARG n 1 72 LEU n 1 73 ALA n 1 74 ASN n 1 75 GLY n 1 76 LEU n 1 77 ALA n 1 78 ALA n 1 79 PHE n 1 80 GLU n 1 81 GLU n 1 82 THR n 1 83 ASP n 1 84 GLN n 1 85 VAL n 1 86 SER n 1 87 VAL n 1 88 ILE n 1 89 THR n 1 90 ILE n 1 91 ALA n 1 92 GLY n 1 93 MET n 1 94 GLY n 1 95 GLY n 1 96 ARG n 1 97 LEU n 1 98 ILE n 1 99 ALA n 1 100 ARG n 1 101 ILE n 1 102 LEU n 1 103 GLU n 1 104 GLU n 1 105 GLY n 1 106 LEU n 1 107 GLY n 1 108 LYS n 1 109 LEU n 1 110 ALA n 1 111 ASN n 1 112 VAL n 1 113 GLU n 1 114 ARG n 1 115 LEU n 1 116 ILE n 1 117 LEU n 1 118 GLN n 1 119 PRO n 1 120 ASN n 1 121 ASN n 1 122 ARG n 1 123 GLU n 1 124 ASP n 1 125 ASP n 1 126 LEU n 1 127 ARG n 1 128 ILE n 1 129 TRP n 1 130 LEU n 1 131 GLN n 1 132 ASP n 1 133 HIS n 1 134 GLY n 1 135 PHE n 1 136 GLN n 1 137 ILE n 1 138 VAL n 1 139 ALA n 1 140 GLU n 1 141 SER n 1 142 ILE n 1 143 LEU n 1 144 GLU n 1 145 GLU n 1 146 ALA n 1 147 GLY n 1 148 LYS n 1 149 PHE n 1 150 TYR n 1 151 GLU n 1 152 ILE n 1 153 LEU n 1 154 VAL n 1 155 VAL n 1 156 GLU n 1 157 ALA n 1 158 GLY n 1 159 GLN n 1 160 MET n 1 161 LYS n 1 162 LEU n 1 163 SER n 1 164 ALA n 1 165 SER n 1 166 ASP n 1 167 VAL n 1 168 ARG n 1 169 PHE n 1 170 GLY n 1 171 PRO n 1 172 PHE n 1 173 LEU n 1 174 SER n 1 175 LYS n 1 176 GLU n 1 177 VAL n 1 178 SER n 1 179 PRO n 1 180 VAL n 1 181 PHE n 1 182 VAL n 1 183 GLN n 1 184 LYS n 1 185 TRP n 1 186 GLN n 1 187 LYS n 1 188 GLU n 1 189 ALA n 1 190 GLU n 1 191 LYS n 1 192 LEU n 1 193 GLU n 1 194 PHE n 1 195 ALA n 1 196 LEU n 1 197 GLY n 1 198 GLN n 1 199 ILE n 1 200 PRO n 1 201 GLU n 1 202 LYS n 1 203 ASN n 1 204 LEU n 1 205 GLU n 1 206 GLU n 1 207 ARG n 1 208 GLN n 1 209 VAL n 1 210 LEU n 1 211 VAL n 1 212 ASP n 1 213 LYS n 1 214 ILE n 1 215 GLN n 1 216 ALA n 1 217 ILE n 1 218 LYS n 1 219 GLU n 1 220 VAL n 1 221 LEU n 1 222 HIS n 1 223 VAL n 1 224 SER n 1 225 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SP_1610 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain TIGR4 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptococcus pneumoniae' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1313 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pVFT3S _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q97PJ9_STRPN _struct_ref.pdbx_db_accession Q97PJ9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MISKRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFE ETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEILVVEAGQM KLSASDVRFGPFLSKEVSPVFVQKWQKEAEKLEFALGQIPEKNLEERQVLVDKIQAIKEVLHVSK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KR9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 225 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q97PJ9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 225 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 225 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 3KR9 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.density_Matthews 3.00 _exptl_crystal.density_diffrn ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_percent_sol 58.94 _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'hanging drop' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details '2.0M ammonium sulfate, 0.1M tri-sodium citrate pH5.6, 0.2M sodium/potassium tartrate, hanging drop, temperature 298K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97888 1.0 2 0.97917 1.0 3 0.96395 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_wavelength_list '0.97888, 0.97917, 0.96395' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A # _reflns.entry_id 3KR9 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 2.0 _reflns.d_resolution_low 71.430 _reflns.number_all ? _reflns.number_obs 20787 _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3KR9 _refine.ls_d_res_high 2.000 _refine.ls_d_res_low 71.430 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 98.230 _refine.ls_number_reflns_obs 20787 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES: REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.236 _refine.ls_R_factor_R_work 0.234 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.289 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1064 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 28.211 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -1.780 _refine.aniso_B[2][2] -1.320 _refine.aniso_B[3][3] 3.100 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.913 _refine.correlation_coeff_Fo_to_Fc_free 0.876 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.192 _refine.pdbx_overall_ESU_R_Free 0.185 _refine.overall_SU_ML 0.113 _refine.overall_SU_B 3.969 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 83.46 _refine.B_iso_min 8.74 _refine.occupancy_max 1.00 _refine.occupancy_min 1.00 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1735 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 1920 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 71.430 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1765 0.020 0.022 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2377 1.695 1.974 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 221 6.075 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 83 34.732 25.301 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 338 16.680 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 11 15.611 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 273 0.130 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 1303 0.008 0.020 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1097 0.973 1.500 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1759 1.670 2.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 668 3.081 3.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 618 4.809 4.500 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 2.000 _refine_ls_shell.d_res_low 2.052 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.270 _refine_ls_shell.number_reflns_R_work 1410 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.235 _refine_ls_shell.R_factor_R_free 0.283 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 81 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1491 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3KR9 _struct.title 'Crystal structure of Streptococcus pneumoniae Sp1610, a putative tRNA (m1A22) methyltransferase' _struct.pdbx_descriptor 'SAM-dependent methyltransferase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KR9 _struct_keywords.text 'class I Rossmann-like methyltransferase fold, Methyltransferase, Transferase' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 3 ? SER A 11 ? SER A 3 SER A 11 1 ? 9 HELX_P HELX_P2 2 ALA A 27 ? ARG A 36 ? ALA A 27 ARG A 36 1 ? 10 HELX_P HELX_P3 3 VAL A 48 ? HIS A 62 ? VAL A 48 HIS A 62 1 ? 15 HELX_P HELX_P4 4 ASN A 74 ? PHE A 79 ? ASN A 74 PHE A 79 5 ? 6 HELX_P HELX_P5 5 GLU A 80 ? GLN A 84 ? GLU A 80 GLN A 84 5 ? 5 HELX_P HELX_P6 6 GLY A 94 ? GLY A 105 ? GLY A 94 GLY A 105 1 ? 12 HELX_P HELX_P7 7 LEU A 106 ? LEU A 109 ? LEU A 106 LEU A 109 5 ? 4 HELX_P HELX_P8 8 ARG A 122 ? HIS A 133 ? ARG A 122 HIS A 133 1 ? 12 HELX_P HELX_P9 9 SER A 163 ? GLY A 170 ? SER A 163 GLY A 170 1 ? 8 HELX_P HELX_P10 10 PHE A 172 ? VAL A 177 ? PHE A 172 VAL A 177 1 ? 6 HELX_P HELX_P11 11 SER A 178 ? ILE A 199 ? SER A 178 ILE A 199 1 ? 22 HELX_P HELX_P12 12 ASN A 203 ? HIS A 222 ? ASN A 203 HIS A 222 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 200 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 200 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 GLU _struct_mon_prot_cis.pdbx_label_seq_id_2 201 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 GLU _struct_mon_prot_cis.pdbx_auth_seq_id_2 201 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 0.12 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 68 ? LEU A 72 ? ILE A 68 LEU A 72 A 2 ILE A 39 ? GLU A 46 ? ILE A 39 GLU A 46 A 3 ALA A 17 ? VAL A 22 ? ALA A 17 VAL A 22 A 4 VAL A 87 ? MET A 93 ? VAL A 87 MET A 93 A 5 ARG A 114 ? PRO A 119 ? ARG A 114 PRO A 119 A 6 LYS A 148 ? ALA A 157 ? LYS A 148 ALA A 157 A 7 PHE A 135 ? GLU A 145 ? PHE A 135 GLU A 145 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 69 ? O GLN A 69 N ALA A 44 ? N ALA A 44 A 2 3 O ILE A 43 ? O ILE A 43 N ASP A 21 ? N ASP A 21 A 3 4 N LEU A 20 ? N LEU A 20 O VAL A 87 ? O VAL A 87 A 4 5 N ILE A 88 ? N ILE A 88 O ILE A 116 ? O ILE A 116 A 5 6 N LEU A 117 ? N LEU A 117 O LEU A 153 ? O LEU A 153 A 6 7 O GLU A 156 ? O GLU A 156 N GLN A 136 ? N GLN A 136 # _atom_sites.entry_id 3KR9 _atom_sites.fract_transf_matrix[1][1] 0.027928 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017045 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006993 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 LEU 6 6 6 LEU LEU A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 SER 14 14 14 SER SER A . n A 1 15 GLN 15 15 15 GLN GLN A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 ASP 21 21 21 ASP ASP A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 SER 24 24 24 SER SER A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 HIS 26 26 26 HIS HIS A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 VAL 34 34 34 VAL VAL A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ARG 36 36 36 ARG ARG A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 LYS 40 40 40 LYS LYS A . n A 1 41 SER 41 41 41 SER SER A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 ILE 43 43 43 ILE ILE A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 GLY 45 45 45 GLY GLY A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 GLY 50 50 50 GLY GLY A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 TYR 52 52 52 TYR TYR A . n A 1 53 GLN 53 53 53 GLN GLN A . n A 1 54 SER 54 54 54 SER SER A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 GLU 60 60 60 GLU GLU A . n A 1 61 ALA 61 61 61 ALA ALA A . n A 1 62 HIS 62 62 62 HIS HIS A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 ILE 68 68 68 ILE ILE A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 VAL 70 70 70 VAL VAL A . n A 1 71 ARG 71 71 71 ARG ARG A . n A 1 72 LEU 72 72 72 LEU LEU A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 ALA 78 78 78 ALA ALA A . n A 1 79 PHE 79 79 79 PHE PHE A . n A 1 80 GLU 80 80 80 GLU GLU A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 SER 86 86 86 SER SER A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 THR 89 89 89 THR THR A . n A 1 90 ILE 90 90 90 ILE ILE A . n A 1 91 ALA 91 91 91 ALA ALA A . n A 1 92 GLY 92 92 92 GLY GLY A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ALA 99 99 99 ALA ALA A . n A 1 100 ARG 100 100 100 ARG ARG A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 GLY 105 105 105 GLY GLY A . n A 1 106 LEU 106 106 106 LEU LEU A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 LYS 108 108 108 LYS LYS A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ALA 110 110 110 ALA ALA A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 GLU 113 113 113 GLU GLU A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 LEU 115 115 115 LEU LEU A . n A 1 116 ILE 116 116 116 ILE ILE A . n A 1 117 LEU 117 117 117 LEU LEU A . n A 1 118 GLN 118 118 118 GLN GLN A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 ARG 122 122 122 ARG ARG A . n A 1 123 GLU 123 123 123 GLU GLU A . n A 1 124 ASP 124 124 124 ASP ASP A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 ILE 128 128 128 ILE ILE A . n A 1 129 TRP 129 129 129 TRP TRP A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 ASP 132 132 132 ASP ASP A . n A 1 133 HIS 133 133 133 HIS HIS A . n A 1 134 GLY 134 134 134 GLY GLY A . n A 1 135 PHE 135 135 135 PHE PHE A . n A 1 136 GLN 136 136 136 GLN GLN A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 ILE 142 142 142 ILE ILE A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 PHE 149 149 149 PHE PHE A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 GLU 151 151 151 GLU GLU A . n A 1 152 ILE 152 152 152 ILE ILE A . n A 1 153 LEU 153 153 153 LEU LEU A . n A 1 154 VAL 154 154 154 VAL VAL A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 GLN 159 159 159 GLN GLN A . n A 1 160 MET 160 160 160 MET MET A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 LEU 162 162 162 LEU LEU A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 SER 165 165 165 SER SER A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 VAL 167 167 167 VAL VAL A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 PHE 169 169 169 PHE PHE A . n A 1 170 GLY 170 170 170 GLY GLY A . n A 1 171 PRO 171 171 171 PRO PRO A . n A 1 172 PHE 172 172 172 PHE PHE A . n A 1 173 LEU 173 173 173 LEU LEU A . n A 1 174 SER 174 174 174 SER SER A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 GLU 176 176 176 GLU GLU A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 SER 178 178 178 SER SER A . n A 1 179 PRO 179 179 179 PRO PRO A . n A 1 180 VAL 180 180 180 VAL VAL A . n A 1 181 PHE 181 181 181 PHE PHE A . n A 1 182 VAL 182 182 182 VAL VAL A . n A 1 183 GLN 183 183 183 GLN GLN A . n A 1 184 LYS 184 184 184 LYS LYS A . n A 1 185 TRP 185 185 185 TRP TRP A . n A 1 186 GLN 186 186 186 GLN GLN A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 GLU 188 188 188 GLU GLU A . n A 1 189 ALA 189 189 189 ALA ALA A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 LYS 191 191 191 LYS LYS A . n A 1 192 LEU 192 192 192 LEU LEU A . n A 1 193 GLU 193 193 193 GLU GLU A . n A 1 194 PHE 194 194 194 PHE PHE A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 LEU 196 196 196 LEU LEU A . n A 1 197 GLY 197 197 197 GLY GLY A . n A 1 198 GLN 198 198 198 GLN GLN A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 PRO 200 200 200 PRO PRO A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 LEU 204 204 204 LEU LEU A . n A 1 205 GLU 205 205 205 GLU GLU A . n A 1 206 GLU 206 206 206 GLU GLU A . n A 1 207 ARG 207 207 207 ARG ARG A . n A 1 208 GLN 208 208 208 GLN GLN A . n A 1 209 VAL 209 209 209 VAL VAL A . n A 1 210 LEU 210 210 210 LEU LEU A . n A 1 211 VAL 211 211 211 VAL VAL A . n A 1 212 ASP 212 212 212 ASP ASP A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 ILE 214 214 214 ILE ILE A . n A 1 215 GLN 215 215 215 GLN GLN A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 LYS 218 218 218 LYS LYS A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 VAL 220 220 220 VAL VAL A . n A 1 221 LEU 221 221 221 LEU LEU A . n A 1 222 HIS 222 222 222 HIS HIS A . n A 1 223 VAL 223 223 ? ? ? A . n A 1 224 SER 224 224 ? ? ? A . n A 1 225 LYS 225 225 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 226 226 HOH HOH A . B 2 HOH 2 227 227 HOH HOH A . B 2 HOH 3 228 228 HOH HOH A . B 2 HOH 4 229 229 HOH HOH A . B 2 HOH 5 230 230 HOH HOH A . B 2 HOH 6 231 231 HOH HOH A . B 2 HOH 7 232 232 HOH HOH A . B 2 HOH 8 233 233 HOH HOH A . B 2 HOH 9 234 234 HOH HOH A . B 2 HOH 10 235 235 HOH HOH A . B 2 HOH 11 236 236 HOH HOH A . B 2 HOH 12 237 237 HOH HOH A . B 2 HOH 13 238 238 HOH HOH A . B 2 HOH 14 239 239 HOH HOH A . B 2 HOH 15 240 240 HOH HOH A . B 2 HOH 16 241 241 HOH HOH A . B 2 HOH 17 242 242 HOH HOH A . B 2 HOH 18 243 243 HOH HOH A . B 2 HOH 19 244 244 HOH HOH A . B 2 HOH 20 245 245 HOH HOH A . B 2 HOH 21 246 246 HOH HOH A . B 2 HOH 22 247 247 HOH HOH A . B 2 HOH 23 248 248 HOH HOH A . B 2 HOH 24 249 249 HOH HOH A . B 2 HOH 25 250 250 HOH HOH A . B 2 HOH 26 251 251 HOH HOH A . B 2 HOH 27 252 252 HOH HOH A . B 2 HOH 28 253 253 HOH HOH A . B 2 HOH 29 254 254 HOH HOH A . B 2 HOH 30 255 255 HOH HOH A . B 2 HOH 31 256 256 HOH HOH A . B 2 HOH 32 257 257 HOH HOH A . B 2 HOH 33 258 258 HOH HOH A . B 2 HOH 34 259 259 HOH HOH A . B 2 HOH 35 260 260 HOH HOH A . B 2 HOH 36 261 261 HOH HOH A . B 2 HOH 37 262 262 HOH HOH A . B 2 HOH 38 263 263 HOH HOH A . B 2 HOH 39 264 264 HOH HOH A . B 2 HOH 40 265 265 HOH HOH A . B 2 HOH 41 266 266 HOH HOH A . B 2 HOH 42 267 267 HOH HOH A . B 2 HOH 43 268 268 HOH HOH A . B 2 HOH 44 269 269 HOH HOH A . B 2 HOH 45 270 270 HOH HOH A . B 2 HOH 46 271 271 HOH HOH A . B 2 HOH 47 272 272 HOH HOH A . B 2 HOH 48 273 273 HOH HOH A . B 2 HOH 49 274 274 HOH HOH A . B 2 HOH 50 275 275 HOH HOH A . B 2 HOH 51 276 276 HOH HOH A . B 2 HOH 52 277 277 HOH HOH A . B 2 HOH 53 278 278 HOH HOH A . B 2 HOH 54 279 279 HOH HOH A . B 2 HOH 55 280 280 HOH HOH A . B 2 HOH 56 281 281 HOH HOH A . B 2 HOH 57 282 282 HOH HOH A . B 2 HOH 58 283 283 HOH HOH A . B 2 HOH 59 284 284 HOH HOH A . B 2 HOH 60 285 285 HOH HOH A . B 2 HOH 61 286 286 HOH HOH A . B 2 HOH 62 287 287 HOH HOH A . B 2 HOH 63 288 288 HOH HOH A . B 2 HOH 64 289 289 HOH HOH A . B 2 HOH 65 290 290 HOH HOH A . B 2 HOH 66 291 291 HOH HOH A . B 2 HOH 67 292 292 HOH HOH A . B 2 HOH 68 293 293 HOH HOH A . B 2 HOH 69 294 294 HOH HOH A . B 2 HOH 70 295 295 HOH HOH A . B 2 HOH 71 296 296 HOH HOH A . B 2 HOH 72 297 297 HOH HOH A . B 2 HOH 73 298 298 HOH HOH A . B 2 HOH 74 299 299 HOH HOH A . B 2 HOH 75 300 300 HOH HOH A . B 2 HOH 76 301 301 HOH HOH A . B 2 HOH 77 302 302 HOH HOH A . B 2 HOH 78 303 303 HOH HOH A . B 2 HOH 79 304 304 HOH HOH A . B 2 HOH 80 305 305 HOH HOH A . B 2 HOH 81 306 306 HOH HOH A . B 2 HOH 82 307 307 HOH HOH A . B 2 HOH 83 308 308 HOH HOH A . B 2 HOH 84 309 309 HOH HOH A . B 2 HOH 85 310 310 HOH HOH A . B 2 HOH 86 311 311 HOH HOH A . B 2 HOH 87 312 312 HOH HOH A . B 2 HOH 88 313 313 HOH HOH A . B 2 HOH 89 314 314 HOH HOH A . B 2 HOH 90 315 315 HOH HOH A . B 2 HOH 91 316 316 HOH HOH A . B 2 HOH 92 317 317 HOH HOH A . B 2 HOH 93 318 318 HOH HOH A . B 2 HOH 94 319 319 HOH HOH A . B 2 HOH 95 320 320 HOH HOH A . B 2 HOH 96 321 321 HOH HOH A . B 2 HOH 97 322 322 HOH HOH A . B 2 HOH 98 323 323 HOH HOH A . B 2 HOH 99 324 324 HOH HOH A . B 2 HOH 100 325 325 HOH HOH A . B 2 HOH 101 326 326 HOH HOH A . B 2 HOH 102 327 327 HOH HOH A . B 2 HOH 103 328 328 HOH HOH A . B 2 HOH 104 329 329 HOH HOH A . B 2 HOH 105 330 330 HOH HOH A . B 2 HOH 106 331 331 HOH HOH A . B 2 HOH 107 332 332 HOH HOH A . B 2 HOH 108 333 333 HOH HOH A . B 2 HOH 109 334 334 HOH HOH A . B 2 HOH 110 335 335 HOH HOH A . B 2 HOH 111 336 336 HOH HOH A . B 2 HOH 112 337 337 HOH HOH A . B 2 HOH 113 338 338 HOH HOH A . B 2 HOH 114 339 339 HOH HOH A . B 2 HOH 115 340 340 HOH HOH A . B 2 HOH 116 341 341 HOH HOH A . B 2 HOH 117 342 342 HOH HOH A . B 2 HOH 118 343 343 HOH HOH A . B 2 HOH 119 344 344 HOH HOH A . B 2 HOH 120 345 345 HOH HOH A . B 2 HOH 121 346 346 HOH HOH A . B 2 HOH 122 347 347 HOH HOH A . B 2 HOH 123 348 348 HOH HOH A . B 2 HOH 124 349 349 HOH HOH A . B 2 HOH 125 350 350 HOH HOH A . B 2 HOH 126 351 351 HOH HOH A . B 2 HOH 127 352 352 HOH HOH A . B 2 HOH 128 353 353 HOH HOH A . B 2 HOH 129 354 354 HOH HOH A . B 2 HOH 130 355 355 HOH HOH A . B 2 HOH 131 356 356 HOH HOH A . B 2 HOH 132 357 357 HOH HOH A . B 2 HOH 133 358 358 HOH HOH A . B 2 HOH 134 359 359 HOH HOH A . B 2 HOH 135 360 360 HOH HOH A . B 2 HOH 136 361 361 HOH HOH A . B 2 HOH 137 362 362 HOH HOH A . B 2 HOH 138 363 363 HOH HOH A . B 2 HOH 139 364 364 HOH HOH A . B 2 HOH 140 365 365 HOH HOH A . B 2 HOH 141 366 366 HOH HOH A . B 2 HOH 142 367 367 HOH HOH A . B 2 HOH 143 368 368 HOH HOH A . B 2 HOH 144 369 369 HOH HOH A . B 2 HOH 145 370 370 HOH HOH A . B 2 HOH 146 371 371 HOH HOH A . B 2 HOH 147 372 372 HOH HOH A . B 2 HOH 148 373 373 HOH HOH A . B 2 HOH 149 374 374 HOH HOH A . B 2 HOH 150 375 375 HOH HOH A . B 2 HOH 151 376 376 HOH HOH A . B 2 HOH 152 377 377 HOH HOH A . B 2 HOH 153 378 378 HOH HOH A . B 2 HOH 154 379 379 HOH HOH A . B 2 HOH 155 380 380 HOH HOH A . B 2 HOH 156 381 381 HOH HOH A . B 2 HOH 157 382 382 HOH HOH A . B 2 HOH 158 383 383 HOH HOH A . B 2 HOH 159 384 384 HOH HOH A . B 2 HOH 160 385 385 HOH HOH A . B 2 HOH 161 386 386 HOH HOH A . B 2 HOH 162 387 387 HOH HOH A . B 2 HOH 163 388 388 HOH HOH A . B 2 HOH 164 389 389 HOH HOH A . B 2 HOH 165 390 390 HOH HOH A . B 2 HOH 166 391 391 HOH HOH A . B 2 HOH 167 392 392 HOH HOH A . B 2 HOH 168 393 393 HOH HOH A . B 2 HOH 169 394 394 HOH HOH A . B 2 HOH 170 395 395 HOH HOH A . B 2 HOH 171 396 396 HOH HOH A . B 2 HOH 172 397 397 HOH HOH A . B 2 HOH 173 398 398 HOH HOH A . B 2 HOH 174 399 399 HOH HOH A . B 2 HOH 175 400 400 HOH HOH A . B 2 HOH 176 401 401 HOH HOH A . B 2 HOH 177 402 402 HOH HOH A . B 2 HOH 178 403 403 HOH HOH A . B 2 HOH 179 404 404 HOH HOH A . B 2 HOH 180 405 405 HOH HOH A . B 2 HOH 181 406 406 HOH HOH A . B 2 HOH 182 407 407 HOH HOH A . B 2 HOH 183 408 408 HOH HOH A . B 2 HOH 184 409 409 HOH HOH A . B 2 HOH 185 410 410 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2009-12-22 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 3 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.contact_author' 3 3 'Structure model' '_software.contact_author_email' 4 3 'Structure model' '_software.date' 5 3 'Structure model' '_software.language' 6 3 'Structure model' '_software.location' 7 3 'Structure model' '_software.name' 8 3 'Structure model' '_software.type' 9 3 'Structure model' '_software.version' # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 SOLVE . ? program 'Tom Terwilliger' terwilliger@LANL.gov phasing http://www.solve.lanl.gov/ ? ? 4 RESOLVE . ? program 'Thomas C. Terwilliger' terwilliger@lanl.gov phasing http://www.solve.lanl.gov/ ? ? 5 REFMAC 5.5.0066 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 6 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 227 ? ? O A HOH 343 ? ? 1.38 2 1 OE1 A GLU 156 ? ? O A HOH 381 ? ? 1.64 3 1 O A HOH 284 ? ? O A HOH 377 ? ? 1.79 4 1 O A HOH 371 ? ? O A HOH 378 ? ? 1.82 5 1 OE1 A GLU 145 ? ? O A HOH 373 ? ? 1.83 6 1 O A GLU 205 ? ? O A HOH 379 ? ? 1.95 7 1 O A HOH 341 ? ? O A HOH 383 ? ? 2.04 8 1 O A HOH 344 ? ? O A HOH 383 ? ? 2.04 9 1 O A HOH 299 ? ? O A HOH 404 ? ? 2.05 10 1 NE A ARG 5 ? ? NE2 A GLN 118 ? ? 2.08 11 1 O A HOH 291 ? ? O A HOH 299 ? ? 2.10 12 1 O A ALA 164 ? ? O A HOH 322 ? ? 2.11 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ILE _pdbx_validate_rmsd_angle.auth_seq_id_1 199 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 200 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CD _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 200 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 109.84 _pdbx_validate_rmsd_angle.angle_target_value 128.40 _pdbx_validate_rmsd_angle.angle_deviation -18.56 _pdbx_validate_rmsd_angle.angle_standard_deviation 2.10 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 41 ? ? 179.75 170.30 2 1 GLN A 198 ? ? -57.17 -87.18 3 1 LYS A 202 ? ? -66.13 -171.30 4 1 ASN A 203 ? ? 51.83 81.67 5 1 GLU A 205 ? ? -37.02 -39.43 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 223 ? A VAL 223 2 1 Y 1 A SER 224 ? A SER 224 3 1 Y 1 A LYS 225 ? A LYS 225 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #