HEADER TRANSFERASE 18-NOV-09 3KRC TITLE MINT HETEROTETRAMERIC GERANYL PYROPHOSPHATE SYNTHASE IN COMPLEX WITH TITLE 2 IPP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYL DIPHOSPHATE SYNTHASE LARGE SUBUNIT; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 84-377; COMPND 5 SYNONYM: GPPS LARGE SUBUNIT, GERANYL PYROPHOSPHATE SYNTHASE LARGE COMPND 6 SUBUNIT, GPP SYNTHASE LARGE SUBUNIT; COMPND 7 EC: 2.5.1.1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: GERANYL DIPHOSPHATE SYNTHASE SMALL SUBUNIT; COMPND 11 CHAIN: B, C; COMPND 12 FRAGMENT: UNP RESIDUES 49-313; COMPND 13 SYNONYM: GPPS SMALL SUBUNIT, GPP SYNTHASE SMALL SUBUNIT; COMPND 14 EC: 2.5.1.1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MENTHA X PIPERITA; SOURCE 3 ORGANISM_COMMON: PEPPERMINT; SOURCE 4 ORGANISM_TAXID: 34256; SOURCE 5 GENE: GPPS LARGE SUBUNIT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET32; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MENTHA X PIPERITA; SOURCE 13 ORGANISM_COMMON: PEPPERMINT; SOURCE 14 ORGANISM_TAXID: 34256; SOURCE 15 GENE: GPPS SMALL SUBUNIT; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET37 KEYWDS PRENYLTRANSFERASE, ISOPRENE BIOSYNTHESIS, ISOPRENYL PYROPHOSPHATE KEYWDS 2 SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.-H.CHANG,F.-L.HSIEH,T.-P.KO,A.H.-J.WANG REVDAT 4 01-NOV-23 3KRC 1 REMARK SEQADV REVDAT 3 01-NOV-17 3KRC 1 REMARK REVDAT 2 12-FEB-14 3KRC 1 JRNL VERSN REVDAT 1 23-FEB-10 3KRC 0 JRNL AUTH T.-H.CHANG,F.-L.HSIEH,T.-P.KO,K.-H.TENG,P.-H.LIANG, JRNL AUTH 2 A.H.-J.WANG JRNL TITL STRUCTURE OF A HETEROTETRAMERIC GERANYL PYROPHOSPHATE JRNL TITL 2 SYNTHASE FROM MINT (MENTHA PIPERITA) REVEALS INTERSUBUNIT JRNL TITL 3 REGULATION JRNL REF PLANT CELL V. 22 454 2010 JRNL REFN ISSN 1040-4651 JRNL PMID 20139160 JRNL DOI 10.1105/TPC.109.071738 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.2 REMARK 3 NUMBER OF REFLECTIONS : 43208 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2163 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.38 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3280 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 199 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8232 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 649 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -23.19300 REMARK 3 B22 (A**2) : 10.20300 REMARK 3 B33 (A**2) : 12.99100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.020 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : 50.30 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : CNS_TOPPAR:PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CNS_TOPPAR:WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : CNS_TOPPAR:ION.PARAM REMARK 3 PARAMETER FILE 4 : LIGAND.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KRC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : HORIZONTALLY FOCUSING SINGLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46911 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2J1O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM BIS-TRIS, 200MM AMMONIUM REMARK 280 ACETATE, 20% PEG 3350, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.06050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 91.37350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 91.37350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.06050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: GEL FILTRATION CHROMATOGRAPHY DEMONSTRATE THAT THE REMARK 300 BIOLOGICAL ASSEMBLY SHOULD BE A HETERO-TETRAMER, COMPOSED OF TWO REMARK 300 HETERO-DIMERS (ONE IS A CHAIN AND B CHAIN, THE OTHER IS C CHAIN AND REMARK 300 D CHAIN). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 229 REMARK 465 SER A 230 REMARK 465 LYS A 231 REMARK 465 GLU A 232 REMARK 465 LEU A 233 REMARK 465 GLY A 234 REMARK 465 LYS A 235 REMARK 465 THR A 236 REMARK 465 ALA A 237 REMARK 465 GLY A 238 REMARK 465 LYS A 239 REMARK 465 ASP A 240 REMARK 465 LEU A 241 REMARK 465 VAL A 242 REMARK 465 ALA A 243 REMARK 465 ASP A 244 REMARK 465 GLU B 260 REMARK 465 PRO B 261 REMARK 465 SER B 262 REMARK 465 LEU B 263 REMARK 465 TYR B 264 REMARK 465 ALA B 265 REMARK 465 ALA B 266 REMARK 465 HIS B 267 REMARK 465 HIS B 268 REMARK 465 HIS B 269 REMARK 465 HIS B 270 REMARK 465 HIS B 271 REMARK 465 HIS B 272 REMARK 465 HIS B 273 REMARK 465 HIS B 274 REMARK 465 HIS C 272 REMARK 465 HIS C 273 REMARK 465 HIS C 274 REMARK 465 LYS D 228 REMARK 465 SER D 229 REMARK 465 SER D 230 REMARK 465 LYS D 231 REMARK 465 GLU D 232 REMARK 465 LEU D 233 REMARK 465 GLY D 234 REMARK 465 LYS D 235 REMARK 465 THR D 236 REMARK 465 ALA D 237 REMARK 465 GLY D 238 REMARK 465 LYS D 239 REMARK 465 ASP D 240 REMARK 465 LEU D 241 REMARK 465 VAL D 242 REMARK 465 ALA D 243 REMARK 465 ASP D 244 REMARK 465 LYS D 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 263 O HOH D 544 2.10 REMARK 500 OD2 ASP A 262 O HOH A 523 2.14 REMARK 500 OG SER B 167 OE2 GLU D 33 2.14 REMARK 500 O HOH A 336 O HOH A 354 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O PHE B 246 O HOH A 509 3545 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 3 C - N - CA ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 85 152.57 -48.99 REMARK 500 MET A 88 -119.13 -99.77 REMARK 500 ARG A 94 107.50 -172.57 REMARK 500 GLU A 167 48.28 -61.27 REMARK 500 THR A 181 -58.02 -134.38 REMARK 500 THR A 227 -86.62 -50.38 REMARK 500 ILE A 252 12.15 -144.95 REMARK 500 GLN B 2 -39.21 -136.40 REMARK 500 ASN B 165 6.35 173.92 REMARK 500 LYS B 221 -19.68 -45.29 REMARK 500 GLN B 225 90.90 -66.73 REMARK 500 LEU B 226 31.45 -161.74 REMARK 500 ILE B 227 57.36 -53.08 REMARK 500 HIS B 247 124.71 15.67 REMARK 500 ASN B 250 -73.10 -40.52 REMARK 500 ALA B 251 14.79 -63.98 REMARK 500 GLU B 252 -63.49 -130.08 REMARK 500 ILE C 20 68.34 -115.21 REMARK 500 ILE C 22 96.86 -50.98 REMARK 500 ARG C 59 -29.03 -36.11 REMARK 500 SER C 92 108.81 -6.14 REMARK 500 LYS C 93 -50.18 -27.35 REMARK 500 ALA C 127 24.93 -74.40 REMARK 500 THR C 129 -79.31 -61.57 REMARK 500 ASP C 130 3.43 -69.36 REMARK 500 ASP C 163 106.78 -8.80 REMARK 500 ASN C 165 -5.09 -160.33 REMARK 500 ALA C 196 173.80 -49.01 REMARK 500 LEU C 226 -20.66 168.09 REMARK 500 ILE C 227 82.68 -37.87 REMARK 500 GLU C 229 3.60 -58.35 REMARK 500 HIS C 247 131.79 -14.18 REMARK 500 MET D 88 -105.65 -116.12 REMARK 500 ARG D 94 108.43 -168.88 REMARK 500 ARG D 95 32.45 86.27 REMARK 500 CYS D 161 38.74 -86.08 REMARK 500 SER D 162 33.48 -176.62 REMARK 500 GLU D 163 35.44 -92.77 REMARK 500 ALA D 166 -19.43 -170.65 REMARK 500 LYS D 180 39.66 -63.70 REMARK 500 THR D 181 -52.59 156.41 REMARK 500 VAL D 254 -29.53 -28.21 REMARK 500 GLU D 255 32.68 -72.60 REMARK 500 LYS D 256 -5.92 173.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO C 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE D 901 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KRA RELATED DB: PDB REMARK 900 RELATED ID: 3KRF RELATED DB: PDB REMARK 900 RELATED ID: 3KRO RELATED DB: PDB REMARK 900 RELATED ID: 3KRP RELATED DB: PDB DBREF 3KRC A 2 295 UNP Q9SBR3 Q9SBR3_MENPI 84 377 DBREF 3KRC B 2 266 UNP Q9SBR4 Q9SBR4_MENPI 49 313 DBREF 3KRC C 2 266 UNP Q9SBR4 Q9SBR4_MENPI 49 313 DBREF 3KRC D 2 295 UNP Q9SBR3 Q9SBR3_MENPI 84 377 SEQADV 3KRC MET A 1 UNP Q9SBR3 EXPRESSION TAG SEQADV 3KRC MET B 1 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS B 267 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS B 268 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS B 269 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS B 270 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS B 271 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS B 272 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS B 273 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS B 274 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC MET C 1 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS C 267 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS C 268 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS C 269 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS C 270 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS C 271 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS C 272 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS C 273 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC HIS C 274 UNP Q9SBR4 EXPRESSION TAG SEQADV 3KRC MET D 1 UNP Q9SBR3 EXPRESSION TAG SEQRES 1 A 295 MET PHE ASP PHE ASP GLY TYR MET LEU ARG LYS ALA LYS SEQRES 2 A 295 SER VAL ASN LYS ALA LEU GLU ALA ALA VAL GLN MET LYS SEQRES 3 A 295 GLU PRO LEU LYS ILE HIS GLU SER MET ARG TYR SER LEU SEQRES 4 A 295 LEU ALA GLY GLY LYS ARG VAL ARG PRO MET LEU CYS ILE SEQRES 5 A 295 ALA ALA CYS GLU LEU VAL GLY GLY ASP GLU SER THR ALA SEQRES 6 A 295 MET PRO ALA ALA CYS ALA VAL GLU MET ILE HIS THR MET SEQRES 7 A 295 SER LEU MET HIS ASP ASP LEU PRO CYS MET ASP ASN ASP SEQRES 8 A 295 ASP LEU ARG ARG GLY LYS PRO THR ASN HIS MET ALA PHE SEQRES 9 A 295 GLY GLU SER VAL ALA VAL LEU ALA GLY ASP ALA LEU LEU SEQRES 10 A 295 SER PHE ALA PHE GLU HIS VAL ALA ALA ALA THR LYS GLY SEQRES 11 A 295 ALA PRO PRO GLU ARG ILE VAL ARG VAL LEU GLY GLU LEU SEQRES 12 A 295 ALA VAL SER ILE GLY SER GLU GLY LEU VAL ALA GLY GLN SEQRES 13 A 295 VAL VAL ASP VAL CYS SER GLU GLY MET ALA GLU VAL GLY SEQRES 14 A 295 LEU ASP HIS LEU GLU PHE ILE HIS HIS HIS LYS THR ALA SEQRES 15 A 295 ALA LEU LEU GLN GLY SER VAL VAL LEU GLY ALA ILE LEU SEQRES 16 A 295 GLY GLY GLY LYS GLU GLU GLU VAL ALA LYS LEU ARG LYS SEQRES 17 A 295 PHE ALA ASN CYS ILE GLY LEU LEU PHE GLN VAL VAL ASP SEQRES 18 A 295 ASP ILE LEU ASP VAL THR LYS SER SER LYS GLU LEU GLY SEQRES 19 A 295 LYS THR ALA GLY LYS ASP LEU VAL ALA ASP LYS THR THR SEQRES 20 A 295 TYR PRO LYS LEU ILE GLY VAL GLU LYS SER LYS GLU PHE SEQRES 21 A 295 ALA ASP ARG LEU ASN ARG GLU ALA GLN GLU GLN LEU LEU SEQRES 22 A 295 HIS PHE HIS PRO HIS ARG ALA ALA PRO LEU ILE ALA LEU SEQRES 23 A 295 ALA ASN TYR ILE ALA TYR ARG ASP ASN SEQRES 1 B 274 MET GLN PRO TYR TRP ALA ALA ILE GLU ALA ASP ILE GLU SEQRES 2 B 274 ARG TYR LEU LYS LYS SER ILE THR ILE ARG PRO PRO GLU SEQRES 3 B 274 THR VAL PHE GLY PRO MET HIS HIS LEU THR PHE ALA ALA SEQRES 4 B 274 PRO ALA THR ALA ALA SER THR LEU CYS LEU ALA ALA CYS SEQRES 5 B 274 GLU LEU VAL GLY GLY ASP ARG SER GLN ALA MET ALA ALA SEQRES 6 B 274 ALA ALA ALA ILE HIS LEU VAL HIS ALA ALA ALA TYR VAL SEQRES 7 B 274 HIS GLU HIS LEU PRO LEU THR ASP GLY SER ARG PRO VAL SEQRES 8 B 274 SER LYS PRO ALA ILE GLN HIS LYS TYR GLY PRO ASN VAL SEQRES 9 B 274 GLU LEU LEU THR GLY ASP GLY ILE VAL PRO PHE GLY PHE SEQRES 10 B 274 GLU LEU LEU ALA GLY SER VAL ASP PRO ALA ARG THR ASP SEQRES 11 B 274 ASP PRO ASP ARG ILE LEU ARG VAL ILE ILE GLU ILE SER SEQRES 12 B 274 ARG ALA GLY GLY PRO GLU GLY MET ILE SER GLY LEU HIS SEQRES 13 B 274 ARG GLU GLU GLU ILE VAL ASP GLY ASN THR SER LEU ASP SEQRES 14 B 274 PHE ILE GLU TYR VAL CYS LYS LYS LYS TYR GLY GLU MET SEQRES 15 B 274 HIS ALA CYS GLY ALA ALA CYS GLY ALA ILE LEU GLY GLY SEQRES 16 B 274 ALA ALA GLU GLU GLU ILE GLN LYS LEU ARG ASN PHE GLY SEQRES 17 B 274 LEU TYR GLN GLY THR LEU ARG GLY MET MET GLU MET LYS SEQRES 18 B 274 ASN SER HIS GLN LEU ILE ASP GLU ASN ILE ILE GLY LYS SEQRES 19 B 274 LEU LYS GLU LEU ALA LEU GLU GLU LEU GLY GLY PHE HIS SEQRES 20 B 274 GLY LYS ASN ALA GLU LEU MET SER SER LEU VAL ALA GLU SEQRES 21 B 274 PRO SER LEU TYR ALA ALA HIS HIS HIS HIS HIS HIS HIS SEQRES 22 B 274 HIS SEQRES 1 C 274 MET GLN PRO TYR TRP ALA ALA ILE GLU ALA ASP ILE GLU SEQRES 2 C 274 ARG TYR LEU LYS LYS SER ILE THR ILE ARG PRO PRO GLU SEQRES 3 C 274 THR VAL PHE GLY PRO MET HIS HIS LEU THR PHE ALA ALA SEQRES 4 C 274 PRO ALA THR ALA ALA SER THR LEU CYS LEU ALA ALA CYS SEQRES 5 C 274 GLU LEU VAL GLY GLY ASP ARG SER GLN ALA MET ALA ALA SEQRES 6 C 274 ALA ALA ALA ILE HIS LEU VAL HIS ALA ALA ALA TYR VAL SEQRES 7 C 274 HIS GLU HIS LEU PRO LEU THR ASP GLY SER ARG PRO VAL SEQRES 8 C 274 SER LYS PRO ALA ILE GLN HIS LYS TYR GLY PRO ASN VAL SEQRES 9 C 274 GLU LEU LEU THR GLY ASP GLY ILE VAL PRO PHE GLY PHE SEQRES 10 C 274 GLU LEU LEU ALA GLY SER VAL ASP PRO ALA ARG THR ASP SEQRES 11 C 274 ASP PRO ASP ARG ILE LEU ARG VAL ILE ILE GLU ILE SER SEQRES 12 C 274 ARG ALA GLY GLY PRO GLU GLY MET ILE SER GLY LEU HIS SEQRES 13 C 274 ARG GLU GLU GLU ILE VAL ASP GLY ASN THR SER LEU ASP SEQRES 14 C 274 PHE ILE GLU TYR VAL CYS LYS LYS LYS TYR GLY GLU MET SEQRES 15 C 274 HIS ALA CYS GLY ALA ALA CYS GLY ALA ILE LEU GLY GLY SEQRES 16 C 274 ALA ALA GLU GLU GLU ILE GLN LYS LEU ARG ASN PHE GLY SEQRES 17 C 274 LEU TYR GLN GLY THR LEU ARG GLY MET MET GLU MET LYS SEQRES 18 C 274 ASN SER HIS GLN LEU ILE ASP GLU ASN ILE ILE GLY LYS SEQRES 19 C 274 LEU LYS GLU LEU ALA LEU GLU GLU LEU GLY GLY PHE HIS SEQRES 20 C 274 GLY LYS ASN ALA GLU LEU MET SER SER LEU VAL ALA GLU SEQRES 21 C 274 PRO SER LEU TYR ALA ALA HIS HIS HIS HIS HIS HIS HIS SEQRES 22 C 274 HIS SEQRES 1 D 295 MET PHE ASP PHE ASP GLY TYR MET LEU ARG LYS ALA LYS SEQRES 2 D 295 SER VAL ASN LYS ALA LEU GLU ALA ALA VAL GLN MET LYS SEQRES 3 D 295 GLU PRO LEU LYS ILE HIS GLU SER MET ARG TYR SER LEU SEQRES 4 D 295 LEU ALA GLY GLY LYS ARG VAL ARG PRO MET LEU CYS ILE SEQRES 5 D 295 ALA ALA CYS GLU LEU VAL GLY GLY ASP GLU SER THR ALA SEQRES 6 D 295 MET PRO ALA ALA CYS ALA VAL GLU MET ILE HIS THR MET SEQRES 7 D 295 SER LEU MET HIS ASP ASP LEU PRO CYS MET ASP ASN ASP SEQRES 8 D 295 ASP LEU ARG ARG GLY LYS PRO THR ASN HIS MET ALA PHE SEQRES 9 D 295 GLY GLU SER VAL ALA VAL LEU ALA GLY ASP ALA LEU LEU SEQRES 10 D 295 SER PHE ALA PHE GLU HIS VAL ALA ALA ALA THR LYS GLY SEQRES 11 D 295 ALA PRO PRO GLU ARG ILE VAL ARG VAL LEU GLY GLU LEU SEQRES 12 D 295 ALA VAL SER ILE GLY SER GLU GLY LEU VAL ALA GLY GLN SEQRES 13 D 295 VAL VAL ASP VAL CYS SER GLU GLY MET ALA GLU VAL GLY SEQRES 14 D 295 LEU ASP HIS LEU GLU PHE ILE HIS HIS HIS LYS THR ALA SEQRES 15 D 295 ALA LEU LEU GLN GLY SER VAL VAL LEU GLY ALA ILE LEU SEQRES 16 D 295 GLY GLY GLY LYS GLU GLU GLU VAL ALA LYS LEU ARG LYS SEQRES 17 D 295 PHE ALA ASN CYS ILE GLY LEU LEU PHE GLN VAL VAL ASP SEQRES 18 D 295 ASP ILE LEU ASP VAL THR LYS SER SER LYS GLU LEU GLY SEQRES 19 D 295 LYS THR ALA GLY LYS ASP LEU VAL ALA ASP LYS THR THR SEQRES 20 D 295 TYR PRO LYS LEU ILE GLY VAL GLU LYS SER LYS GLU PHE SEQRES 21 D 295 ALA ASP ARG LEU ASN ARG GLU ALA GLN GLU GLN LEU LEU SEQRES 22 D 295 HIS PHE HIS PRO HIS ARG ALA ALA PRO LEU ILE ALA LEU SEQRES 23 D 295 ALA ASN TYR ILE ALA TYR ARG ASP ASN HET IPE A 902 14 HET EDO C 903 4 HET IPE D 901 14 HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 5 IPE 2(C5 H12 O7 P2) FORMUL 6 EDO C2 H6 O2 FORMUL 8 HOH *649(H2 O) HELIX 1 1 ASP A 3 VAL A 23 1 21 HELIX 2 2 PRO A 28 LEU A 40 1 13 HELIX 3 3 ARG A 45 VAL A 58 1 14 HELIX 4 4 ASP A 61 ASP A 84 1 24 HELIX 5 5 THR A 99 GLY A 105 1 7 HELIX 6 6 GLY A 105 THR A 128 1 24 HELIX 7 7 PRO A 132 GLY A 148 1 17 HELIX 8 8 GLY A 151 CYS A 161 1 11 HELIX 9 9 GLY A 169 THR A 181 1 13 HELIX 10 10 THR A 181 GLY A 197 1 17 HELIX 11 11 LYS A 199 LYS A 228 1 30 HELIX 12 12 THR A 247 LEU A 273 1 27 HELIX 13 13 HIS A 276 ARG A 293 1 18 HELIX 14 14 GLN B 2 ILE B 20 1 19 HELIX 15 15 PRO B 25 ALA B 39 1 15 HELIX 16 16 THR B 42 VAL B 55 1 14 HELIX 17 17 ARG B 59 HIS B 81 1 23 HELIX 18 18 GLY B 101 SER B 123 1 23 HELIX 19 19 ASP B 130 GLY B 146 1 17 HELIX 20 20 GLY B 150 GLU B 159 1 10 HELIX 21 21 SER B 167 TYR B 179 1 13 HELIX 22 22 TYR B 179 GLY B 195 1 17 HELIX 23 23 ALA B 197 LYS B 221 1 25 HELIX 24 24 ASP B 228 GLY B 244 1 17 HELIX 25 25 LYS B 249 MET B 254 1 6 HELIX 26 26 SER B 255 ALA B 259 5 5 HELIX 27 27 GLN C 2 ILE C 20 1 19 HELIX 28 28 PRO C 25 ALA C 39 1 15 HELIX 29 29 THR C 42 VAL C 55 1 14 HELIX 30 30 ASP C 58 HIS C 81 1 24 HELIX 31 31 GLY C 101 SER C 123 1 23 HELIX 32 32 ASP C 130 GLY C 146 1 17 HELIX 33 33 GLY C 150 GLU C 159 1 10 HELIX 34 34 SER C 167 TYR C 179 1 13 HELIX 35 35 TYR C 179 GLY C 194 1 16 HELIX 36 36 ALA C 197 GLU C 219 1 23 HELIX 37 37 ASP C 228 GLY C 244 1 17 HELIX 38 38 GLY C 248 ALA C 259 1 12 HELIX 39 39 LEU C 263 HIS C 271 1 9 HELIX 40 40 ASP D 3 VAL D 23 1 21 HELIX 41 41 PRO D 28 LEU D 40 1 13 HELIX 42 42 ARG D 45 VAL D 58 1 14 HELIX 43 43 ASP D 61 ASP D 84 1 24 HELIX 44 44 THR D 99 GLY D 105 1 7 HELIX 45 45 GLY D 105 THR D 128 1 24 HELIX 46 46 PRO D 132 GLY D 148 1 17 HELIX 47 47 GLY D 151 CYS D 161 1 11 HELIX 48 48 ASP D 171 LYS D 180 1 10 HELIX 49 49 THR D 181 GLY D 196 1 16 HELIX 50 50 LYS D 199 VAL D 226 1 28 HELIX 51 51 THR D 247 GLY D 253 1 7 HELIX 52 52 GLY D 253 LEU D 272 1 20 HELIX 53 53 LEU D 273 PHE D 275 5 3 HELIX 54 54 HIS D 276 TYR D 292 1 17 CISPEP 1 GLU A 27 PRO A 28 0 -1.09 CISPEP 2 PRO B 24 PRO B 25 0 -0.11 CISPEP 3 PRO C 24 PRO C 25 0 -0.54 CISPEP 4 GLU D 27 PRO D 28 0 -0.18 SITE 1 AC1 11 GLY A 43 LYS A 44 ARG A 47 HIS A 76 SITE 2 AC1 11 ARG A 95 LYS A 180 GLN A 218 HOH A 326 SITE 3 AC1 11 HOH A 368 HOH A 369 HOH A 372 SITE 1 AC2 7 PHE A 2 ILE C 12 ALA C 41 THR C 42 SITE 2 AC2 7 SER C 45 THR C 46 HIS C 70 SITE 1 AC3 10 LYS D 44 ARG D 47 HIS D 76 ARG D 95 SITE 2 AC3 10 LYS D 180 THR D 181 PHE D 217 HOH D 316 SITE 3 AC3 10 HOH D 318 HOH D 362 CRYST1 54.121 108.970 182.747 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018477 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009177 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005472 0.00000