HEADER ISOMERASE 19-NOV-09 3KRS TITLE STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM CRYPTOSPORIDIUM PARVUM AT TITLE 2 1.55A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.3.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRYPTOSPORIDIUM PARVUM IOWA II; SOURCE 3 ORGANISM_TAXID: 353152; SOURCE 4 STRAIN: IOWA II; SOURCE 5 GENE: CGD1_3040; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, SBRI, EMERALD BIOSTRUCTURES, UNIVERSITY OF WASHINGTON, NIH, KEYWDS 2 NIAID, TRIOSEPHOSPHATE ISOMERASE, CRYPTOSPORIDIUM PARVUM, ISOMERASE, KEYWDS 3 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 4 INFECTIOUS DISEASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3KRS 1 REMARK SEQADV LINK REVDAT 2 21-SEP-11 3KRS 1 JRNL VERSN REVDAT 1 01-DEC-09 3KRS 0 JRNL AUTH T.N.NGUYEN,J.ABENDROTH,D.J.LEIBLY,K.P.LE,W.GUO,A.KELLEY, JRNL AUTH 2 L.STEWART,P.J.MYLER,W.C.VAN VOORHIS JRNL TITL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM CRYPTOSPORIDIUM JRNL TITL 2 PARVUM. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 67 1095 2011 JRNL REFN ESSN 1744-3091 JRNL PMID 21904056 JRNL DOI 10.1107/S1744309111019178 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 79284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3990 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5077 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 282 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 845 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 9.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.98000 REMARK 3 B22 (A**2) : -0.69000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.44000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.075 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.046 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4001 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2698 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5442 ; 1.415 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6678 ; 0.911 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 547 ; 6.041 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;42.904 ;25.556 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 727 ;12.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.043 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 624 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4532 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 764 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2538 ; 0.716 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1050 ; 0.225 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4126 ; 1.250 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1463 ; 2.362 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1290 ; 3.839 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 38.7877 24.5100 37.4003 REMARK 3 T TENSOR REMARK 3 T11: 0.0051 T22: 0.0182 REMARK 3 T33: 0.0161 T12: -0.0033 REMARK 3 T13: -0.0052 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.1324 L22: 0.2977 REMARK 3 L33: 0.3575 L12: -0.0676 REMARK 3 L13: -0.1158 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.0115 S13: -0.0052 REMARK 3 S21: -0.0182 S22: 0.0026 S23: -0.0155 REMARK 3 S31: 0.0141 S32: -0.0329 S33: 0.0008 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -10 B 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 29.1536 29.0678 70.2051 REMARK 3 T TENSOR REMARK 3 T11: 0.0048 T22: 0.0095 REMARK 3 T33: 0.0102 T12: 0.0036 REMARK 3 T13: 0.0014 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.1493 L22: 0.2778 REMARK 3 L33: 0.4855 L12: 0.0344 REMARK 3 L13: -0.0682 L23: 0.0417 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: 0.0113 S13: 0.0038 REMARK 3 S21: 0.0296 S22: 0.0007 S23: -0.0056 REMARK 3 S31: -0.0076 S32: -0.0443 S33: -0.0058 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KRS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976484 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2VFD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MD PACT SCREEN G8: 20% PEG 3350, 100MM REMARK 280 BISTRISPROPANE PH 7.5, 200MM NA2SO4, CRPAA.01119.A AT 75 MG/ML, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.96500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLN A 102 CG CD OE1 NE2 REMARK 470 LYS B 21 CG CD CE NZ REMARK 470 ASP B 56 CG OD1 OD2 REMARK 470 GLN B 102 CG CD OE1 NE2 REMARK 470 GLU B 247 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 UNK UNX B 302 UNK UNX B 305 1.43 REMARK 500 UNK UNX A 302 UNK UNX A 306 1.45 REMARK 500 UNK UNX B 302 UNK UNX B 306 1.50 REMARK 500 UNK UNX A 302 UNK UNX A 305 1.50 REMARK 500 UNK UNX A 302 UNK UNX A 304 1.52 REMARK 500 UNK UNX A 302 UNK UNX A 303 1.57 REMARK 500 UNK UNX B 302 UNK UNX B 304 1.59 REMARK 500 UNK UNX B 302 UNK UNX B 303 1.60 REMARK 500 O HOH B 280 O HOH B 465 2.16 REMARK 500 UNK UNX A 304 UNK UNX A 306 2.17 REMARK 500 UNK UNX A 305 UNK UNX A 306 2.18 REMARK 500 NZ LYS A 86 O HOH A 385 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 723 O HOH A 867 2746 2.17 REMARK 500 O HOH A 650 O HOH A 952 2756 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 100 NE - CZ - NH2 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 136 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 136 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -146.48 52.71 REMARK 500 ASP A 56 56.77 -93.65 REMARK 500 TYR A 198 -105.19 -121.53 REMARK 500 LYS B 12 -147.54 53.89 REMARK 500 ASP B 56 46.49 -141.27 REMARK 500 TYR B 198 -103.87 -121.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 5 OH REMARK 620 2 ILE A 223 O 90.5 REMARK 620 3 CYS A 225 O 160.1 92.7 REMARK 620 4 ILE A 228 O 106.8 97.5 92.2 REMARK 620 5 HOH A 322 O 78.8 87.5 81.7 172.4 REMARK 620 6 HOH A 362 O 81.7 171.2 96.0 81.0 95.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 5 OH REMARK 620 2 ILE B 223 O 88.4 REMARK 620 3 CYS B 225 O 159.8 94.0 REMARK 620 4 ILE B 228 O 105.4 96.6 94.2 REMARK 620 5 HOH B 321 O 80.9 168.1 97.8 81.4 REMARK 620 6 HOH B 974 O 77.1 87.8 83.0 174.9 94.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CRPAA.01119.A RELATED DB: TARGETDB DBREF 3KRS A 1 250 UNP Q5CSE7 Q5CSE7_CRYPV 1 250 DBREF 3KRS B 1 250 UNP Q5CSE7 Q5CSE7_CRYPV 1 250 SEQADV 3KRS MET A -20 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS ALA A -19 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS A -18 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS A -17 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS A -16 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS A -15 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS A -14 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS A -13 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS MET A -12 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLY A -11 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS THR A -10 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS LEU A -9 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLU A -8 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS ALA A -7 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLN A -6 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS THR A -5 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLN A -4 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLY A -3 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS PRO A -2 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLY A -1 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS SER A 0 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS MET B -20 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS ALA B -19 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS B -18 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS B -17 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS B -16 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS B -15 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS B -14 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS HIS B -13 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS MET B -12 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLY B -11 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS THR B -10 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS LEU B -9 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLU B -8 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS ALA B -7 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLN B -6 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS THR B -5 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLN B -4 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLY B -3 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS PRO B -2 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS GLY B -1 UNP Q5CSE7 EXPRESSION TAG SEQADV 3KRS SER B 0 UNP Q5CSE7 EXPRESSION TAG SEQRES 1 A 271 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 271 ALA GLN THR GLN GLY PRO GLY SER MET SER ARG LYS TYR SEQRES 3 A 271 PHE VAL GLY GLY ASN PHE LYS CYS ASN GLY THR LYS GLU SEQRES 4 A 271 SER LEU LYS THR LEU ILE ASP SER PHE LYS GLN VAL GLU SEQRES 5 A 271 SER SER ASN SER GLU VAL TYR VAL PHE PRO THR SER LEU SEQRES 6 A 271 HIS ILE SER LEU VAL LYS GLU PHE PHE GLY ASN ASP HIS SEQRES 7 A 271 PRO GLY VAL PHE LYS ILE GLY SER GLN ASN ILE SER CYS SEQRES 8 A 271 THR GLY ASN GLY ALA PHE THR GLY GLU VAL SER CYS GLU SEQRES 9 A 271 MET LEU LYS ASP MET ASP VAL ASP CYS SER LEU VAL GLY SEQRES 10 A 271 HIS SER GLU ARG ARG GLN TYR TYR SER GLU THR ASP GLN SEQRES 11 A 271 ILE VAL ASN ASN LYS VAL LYS LYS GLY LEU GLU ASN GLY SEQRES 12 A 271 LEU LYS ILE VAL LEU CYS ILE GLY GLU SER LEU SER GLU SEQRES 13 A 271 ARG GLU THR GLY LYS THR ASN ASP VAL ILE GLN LYS GLN SEQRES 14 A 271 LEU THR GLU ALA LEU LYS ASP VAL SER ASP LEU SER ASN SEQRES 15 A 271 LEU VAL ILE ALA TYR GLU PRO ILE TRP ALA ILE GLY THR SEQRES 16 A 271 GLY VAL VAL ALA THR PRO GLY GLN ALA GLN GLU ALA HIS SEQRES 17 A 271 ALA PHE ILE ARG GLU TYR VAL THR ARG MET TYR ASN PRO SEQRES 18 A 271 GLN VAL SER SER ASN LEU ARG ILE ILE TYR GLY GLY SER SEQRES 19 A 271 VAL THR PRO ASP ASN CYS ASN GLU LEU ILE LYS CYS ALA SEQRES 20 A 271 ASP ILE ASP GLY PHE LEU VAL GLY GLY ALA SER LEU LYS SEQRES 21 A 271 PRO THR PHE ALA LYS ILE ILE GLU SER ALA GLN SEQRES 1 B 271 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 271 ALA GLN THR GLN GLY PRO GLY SER MET SER ARG LYS TYR SEQRES 3 B 271 PHE VAL GLY GLY ASN PHE LYS CYS ASN GLY THR LYS GLU SEQRES 4 B 271 SER LEU LYS THR LEU ILE ASP SER PHE LYS GLN VAL GLU SEQRES 5 B 271 SER SER ASN SER GLU VAL TYR VAL PHE PRO THR SER LEU SEQRES 6 B 271 HIS ILE SER LEU VAL LYS GLU PHE PHE GLY ASN ASP HIS SEQRES 7 B 271 PRO GLY VAL PHE LYS ILE GLY SER GLN ASN ILE SER CYS SEQRES 8 B 271 THR GLY ASN GLY ALA PHE THR GLY GLU VAL SER CYS GLU SEQRES 9 B 271 MET LEU LYS ASP MET ASP VAL ASP CYS SER LEU VAL GLY SEQRES 10 B 271 HIS SER GLU ARG ARG GLN TYR TYR SER GLU THR ASP GLN SEQRES 11 B 271 ILE VAL ASN ASN LYS VAL LYS LYS GLY LEU GLU ASN GLY SEQRES 12 B 271 LEU LYS ILE VAL LEU CYS ILE GLY GLU SER LEU SER GLU SEQRES 13 B 271 ARG GLU THR GLY LYS THR ASN ASP VAL ILE GLN LYS GLN SEQRES 14 B 271 LEU THR GLU ALA LEU LYS ASP VAL SER ASP LEU SER ASN SEQRES 15 B 271 LEU VAL ILE ALA TYR GLU PRO ILE TRP ALA ILE GLY THR SEQRES 16 B 271 GLY VAL VAL ALA THR PRO GLY GLN ALA GLN GLU ALA HIS SEQRES 17 B 271 ALA PHE ILE ARG GLU TYR VAL THR ARG MET TYR ASN PRO SEQRES 18 B 271 GLN VAL SER SER ASN LEU ARG ILE ILE TYR GLY GLY SER SEQRES 19 B 271 VAL THR PRO ASP ASN CYS ASN GLU LEU ILE LYS CYS ALA SEQRES 20 B 271 ASP ILE ASP GLY PHE LEU VAL GLY GLY ALA SER LEU LYS SEQRES 21 B 271 PRO THR PHE ALA LYS ILE ILE GLU SER ALA GLN HET NA A 301 1 HET UNX A 302 1 HET UNX A 303 1 HET UNX A 304 1 HET UNX A 305 1 HET UNX A 306 1 HET UNX A 307 1 HET NA B 301 1 HET UNX B 302 1 HET UNX B 303 1 HET UNX B 304 1 HET UNX B 305 1 HET UNX B 306 1 HET UNX B 307 1 HETNAM NA SODIUM ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 NA 2(NA 1+) FORMUL 4 UNX 12(X) FORMUL 17 HOH *845(H2 O) HELIX 1 1 THR A 16 LYS A 28 1 13 HELIX 2 2 THR A 42 LEU A 44 5 3 HELIX 3 3 HIS A 45 GLY A 54 1 10 HELIX 4 4 SER A 81 MET A 88 1 8 HELIX 5 5 HIS A 97 TYR A 104 1 8 HELIX 6 6 THR A 107 ASN A 121 1 15 HELIX 7 7 SER A 132 THR A 138 1 7 HELIX 8 8 LYS A 140 LEU A 153 1 14 HELIX 9 9 PRO A 168 ILE A 172 5 5 HELIX 10 10 THR A 179 TYR A 198 1 20 HELIX 11 11 ASN A 199 LEU A 206 1 8 HELIX 12 12 ASN A 218 CYS A 225 1 8 HELIX 13 13 GLY A 234 PRO A 240 5 7 HELIX 14 14 THR A 241 ALA A 249 1 9 HELIX 15 15 THR B 16 LYS B 28 1 13 HELIX 16 16 HIS B 45 GLY B 54 1 10 HELIX 17 17 SER B 81 MET B 88 1 8 HELIX 18 18 HIS B 97 TYR B 104 1 8 HELIX 19 19 THR B 107 ASN B 121 1 15 HELIX 20 20 SER B 132 THR B 138 1 7 HELIX 21 21 LYS B 140 LEU B 153 1 14 HELIX 22 22 PRO B 168 ILE B 172 5 5 HELIX 23 23 THR B 179 TYR B 198 1 20 HELIX 24 24 ASN B 199 LEU B 206 1 8 HELIX 25 25 ASN B 218 CYS B 225 1 8 HELIX 26 26 GLY B 234 PRO B 240 5 7 HELIX 27 27 THR B 241 ALA B 249 1 9 SHEET 1 A 4 PHE A 61 ILE A 63 0 SHEET 2 A 4 GLU A 36 PHE A 40 1 N VAL A 39 O LYS A 62 SHEET 3 A 4 PHE A 6 ASN A 10 1 N VAL A 7 O GLU A 36 SHEET 4 A 4 GLY A 230 VAL A 233 1 O VAL A 233 N GLY A 8 SHEET 1 B 4 CYS A 92 VAL A 95 0 SHEET 2 B 4 LYS A 124 ILE A 129 1 O VAL A 126 N SER A 93 SHEET 3 B 4 LEU A 162 TYR A 166 1 O ALA A 165 N LEU A 127 SHEET 4 B 4 ILE A 208 TYR A 210 1 O ILE A 209 N ILE A 164 SHEET 1 C 4 PHE B 61 ILE B 63 0 SHEET 2 C 4 GLU B 36 PHE B 40 1 N VAL B 37 O LYS B 62 SHEET 3 C 4 PHE B 6 ASN B 10 1 N VAL B 7 O GLU B 36 SHEET 4 C 4 GLY B 230 VAL B 233 1 O VAL B 233 N GLY B 8 SHEET 1 D 4 CYS B 92 VAL B 95 0 SHEET 2 D 4 LYS B 124 ILE B 129 1 O VAL B 126 N VAL B 95 SHEET 3 D 4 LEU B 162 TYR B 166 1 O ALA B 165 N LEU B 127 SHEET 4 D 4 ILE B 208 TYR B 210 1 O ILE B 209 N ILE B 164 LINK OH TYR A 5 NA NA A 301 1555 1555 2.56 LINK O ILE A 223 NA NA A 301 1555 1555 2.38 LINK O CYS A 225 NA NA A 301 1555 1555 2.49 LINK O ILE A 228 NA NA A 301 1555 1555 2.29 LINK NA NA A 301 O HOH A 322 1555 1555 2.54 LINK NA NA A 301 O HOH A 362 1555 1555 2.39 LINK OH TYR B 5 NA NA B 301 1555 1555 2.64 LINK O ILE B 223 NA NA B 301 1555 1555 2.43 LINK O CYS B 225 NA NA B 301 1555 1555 2.41 LINK O ILE B 228 NA NA B 301 1555 1555 2.29 LINK NA NA B 301 O HOH B 321 1555 1555 2.38 LINK NA NA B 301 O HOH B 974 1555 1555 2.53 SITE 1 AC1 6 TYR A 5 ILE A 223 CYS A 225 ILE A 228 SITE 2 AC1 6 HOH A 322 HOH A 362 SITE 1 AC2 6 TYR B 5 ILE B 223 CYS B 225 ILE B 228 SITE 2 AC2 6 HOH B 321 HOH B 974 CRYST1 53.560 71.930 75.830 90.00 106.47 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018671 0.000000 0.005519 0.00000 SCALE2 0.000000 0.013902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013751 0.00000