HEADER VIRAL PROTEIN/RNA 20-NOV-09 3KS8 TITLE CRYSTAL STRUCTURE OF RESTON EBOLAVIRUS VP35 RNA BINDING DOMAIN IN TITLE 2 COMPLEX WITH 18BP DSRNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-R(*AP*GP*AP*AP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*A) COMPND 3 -3'; COMPND 4 CHAIN: E; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 5'-R(*UP*CP*CP*UP*CP*CP*CP*UP*CP*CP*CP*UP*CP*CP*UP*UP*CP*U) COMPND 8 -3'; COMPND 9 CHAIN: F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: POLYMERASE COFACTOR VP35; COMPND 13 CHAIN: A, B, C, D; COMPND 14 FRAGMENT: C-TERMINAL RNA BINDING DOMAIN (UNP RESIDUES 160-329); COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 ORGANISM_SCIENTIFIC: RESTON EBOLAVIRUS; SOURCE 7 ORGANISM_COMMON: REBOV; SOURCE 8 ORGANISM_TAXID: 129003; SOURCE 9 STRAIN: RESTON; SOURCE 10 GENE: REBOVGP2, VP35; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 15 EXPRESSION_SYSTEM_PLASMID: PET46 EK/LIC KEYWDS EBOLAVIRUS, RNA-BINDING PROTEIN, PROTEIN-RNA COMPLEX, INTERFERON, KEYWDS 2 RESTON, HOST CYTOPLASM, INTERFERON ANTIVIRAL SYSTEM EVASION, RNA KEYWDS 3 REPLICATION, RNA-BINDING, TRANSCRIPTION, VIRION, VIRAL PROTEIN-RNA KEYWDS 4 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.R.KIMBERLIN,Z.A.BORNHOLDT,S.LI,V.L.WOODS,I.J.MACRAE,E.O.SAPHIRE REVDAT 3 06-SEP-23 3KS8 1 REMARK SEQADV REVDAT 2 01-NOV-17 3KS8 1 REMARK REVDAT 1 12-JAN-10 3KS8 0 JRNL AUTH C.R.KIMBERLIN,Z.A.BORNHOLDT,S.LI,V.L.WOODS,I.J.MACRAE, JRNL AUTH 2 E.O.SAPHIRE JRNL TITL EBOLAVIRUS VP35 USES A BIMODAL STRATEGY TO BIND DSRNA FOR JRNL TITL 2 INNATE IMMUNE SUPPRESSION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 314 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 20018665 JRNL DOI 10.1073/PNAS.0910547107 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_222) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.9 REMARK 3 NUMBER OF REFLECTIONS : 29669 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1211 - 5.1680 0.99 3327 146 0.1681 0.1746 REMARK 3 2 5.1680 - 4.1041 1.00 3301 176 0.1551 0.1701 REMARK 3 3 4.1041 - 3.5859 1.00 3317 186 0.1717 0.2107 REMARK 3 4 3.5859 - 3.2583 1.00 3314 190 0.1992 0.2535 REMARK 3 5 3.2583 - 3.0249 1.00 3277 176 0.2204 0.3027 REMARK 3 6 3.0249 - 2.8466 1.00 3310 179 0.2523 0.2924 REMARK 3 7 2.8466 - 2.7041 0.93 3058 173 0.2631 0.3379 REMARK 3 8 2.7041 - 2.5864 0.75 2507 128 0.2706 0.3459 REMARK 3 9 2.5864 - 2.4869 0.51 1658 90 0.2774 0.3403 REMARK 3 10 2.4869 - 2.4011 0.33 1101 55 0.2424 0.3286 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 48.53 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 4834 REMARK 3 ANGLE : 1.304 6679 REMARK 3 CHIRALITY : 0.060 774 REMARK 3 PLANARITY : 0.006 730 REMARK 3 DIHEDRAL : 18.229 1870 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KS8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, XPREP REMARK 200 DATA SCALING SOFTWARE : XPREP REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 37.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 35.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.43 REMARK 200 R MERGE FOR SHELL (I) : 0.25400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3KS4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 365MM AMMONIUM ACETATE, 100MM REMARK 280 TRISODIUM CITRATE, 18.5% PEG 4000, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.27067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.54133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 146 REMARK 465 ALA A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 VAL A 154 REMARK 465 ASP A 155 REMARK 465 ASP A 156 REMARK 465 ASP A 157 REMARK 465 ASP A 158 REMARK 465 LYS A 159 REMARK 465 PRO A 160 REMARK 465 GLY A 161 REMARK 465 PRO A 162 REMARK 465 ALA A 163 REMARK 465 LEU A 164 REMARK 465 TYR A 165 REMARK 465 GLU A 166 REMARK 465 GLU A 167 REMARK 465 ASN A 168 REMARK 465 ALA A 169 REMARK 465 LEU A 170 REMARK 465 LYS A 171 REMARK 465 GLY A 172 REMARK 465 LYS A 173 REMARK 465 ILE A 174 REMARK 465 ASP A 175 REMARK 465 ASP A 176 REMARK 465 PRO A 177 REMARK 465 ASN A 178 REMARK 465 SER A 179 REMARK 465 TYR A 180 REMARK 465 VAL A 181 REMARK 465 PRO A 182 REMARK 465 ASP A 183 REMARK 465 ALA A 184 REMARK 465 VAL A 185 REMARK 465 GLN A 186 REMARK 465 GLU A 187 REMARK 465 ALA A 188 REMARK 465 TYR A 189 REMARK 465 LYS A 190 REMARK 465 ASN A 191 REMARK 465 LEU A 192 REMARK 465 ASP A 193 REMARK 465 SER A 194 REMARK 465 THR A 195 REMARK 465 SER A 196 REMARK 465 THR A 197 REMARK 465 LEU A 198 REMARK 465 THR A 199 REMARK 465 GLU A 200 REMARK 465 GLU A 201 REMARK 465 ASN A 202 REMARK 465 PHE A 203 REMARK 465 GLY A 204 REMARK 465 LYS A 205 REMARK 465 PRO A 206 REMARK 465 TYR A 207 REMARK 465 MET B 146 REMARK 465 ALA B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 465 VAL B 154 REMARK 465 ASP B 155 REMARK 465 ASP B 156 REMARK 465 ASP B 157 REMARK 465 ASP B 158 REMARK 465 LYS B 159 REMARK 465 PRO B 160 REMARK 465 GLY B 161 REMARK 465 PRO B 162 REMARK 465 ALA B 163 REMARK 465 LEU B 164 REMARK 465 TYR B 165 REMARK 465 GLU B 166 REMARK 465 GLU B 167 REMARK 465 ASN B 168 REMARK 465 ALA B 169 REMARK 465 LEU B 170 REMARK 465 LYS B 171 REMARK 465 GLY B 172 REMARK 465 LYS B 173 REMARK 465 ILE B 174 REMARK 465 ASP B 175 REMARK 465 ASP B 176 REMARK 465 PRO B 177 REMARK 465 ASN B 178 REMARK 465 SER B 179 REMARK 465 TYR B 180 REMARK 465 VAL B 181 REMARK 465 PRO B 182 REMARK 465 ASP B 183 REMARK 465 ALA B 184 REMARK 465 VAL B 185 REMARK 465 GLN B 186 REMARK 465 GLU B 187 REMARK 465 ALA B 188 REMARK 465 TYR B 189 REMARK 465 LYS B 190 REMARK 465 ASN B 191 REMARK 465 LEU B 192 REMARK 465 ASP B 193 REMARK 465 SER B 194 REMARK 465 THR B 195 REMARK 465 SER B 196 REMARK 465 THR B 197 REMARK 465 LEU B 198 REMARK 465 THR B 199 REMARK 465 GLU B 200 REMARK 465 GLU B 201 REMARK 465 ASN B 202 REMARK 465 PHE B 203 REMARK 465 GLY B 204 REMARK 465 LYS B 205 REMARK 465 MET C 146 REMARK 465 ALA C 147 REMARK 465 HIS C 148 REMARK 465 HIS C 149 REMARK 465 HIS C 150 REMARK 465 HIS C 151 REMARK 465 HIS C 152 REMARK 465 HIS C 153 REMARK 465 VAL C 154 REMARK 465 ASP C 155 REMARK 465 ASP C 156 REMARK 465 ASP C 157 REMARK 465 ASP C 158 REMARK 465 LYS C 159 REMARK 465 PRO C 160 REMARK 465 GLY C 161 REMARK 465 PRO C 162 REMARK 465 ALA C 163 REMARK 465 LEU C 164 REMARK 465 TYR C 165 REMARK 465 GLU C 166 REMARK 465 GLU C 167 REMARK 465 ASN C 168 REMARK 465 ALA C 169 REMARK 465 LEU C 170 REMARK 465 LYS C 171 REMARK 465 GLY C 172 REMARK 465 LYS C 173 REMARK 465 ILE C 174 REMARK 465 ASP C 175 REMARK 465 ASP C 176 REMARK 465 PRO C 177 REMARK 465 ASN C 178 REMARK 465 SER C 179 REMARK 465 TYR C 180 REMARK 465 VAL C 181 REMARK 465 PRO C 182 REMARK 465 ASP C 183 REMARK 465 ALA C 184 REMARK 465 VAL C 185 REMARK 465 GLN C 186 REMARK 465 GLU C 187 REMARK 465 ALA C 188 REMARK 465 TYR C 189 REMARK 465 LYS C 190 REMARK 465 ASN C 191 REMARK 465 LEU C 192 REMARK 465 ASP C 193 REMARK 465 SER C 194 REMARK 465 THR C 195 REMARK 465 SER C 196 REMARK 465 THR C 197 REMARK 465 LEU C 198 REMARK 465 THR C 199 REMARK 465 GLU C 200 REMARK 465 GLU C 201 REMARK 465 ASN C 202 REMARK 465 PHE C 203 REMARK 465 GLY C 204 REMARK 465 LYS C 205 REMARK 465 PRO C 206 REMARK 465 TYR C 207 REMARK 465 MET D 146 REMARK 465 ALA D 147 REMARK 465 HIS D 148 REMARK 465 HIS D 149 REMARK 465 HIS D 150 REMARK 465 HIS D 151 REMARK 465 HIS D 152 REMARK 465 HIS D 153 REMARK 465 VAL D 154 REMARK 465 ASP D 155 REMARK 465 ASP D 156 REMARK 465 ASP D 157 REMARK 465 ASP D 158 REMARK 465 LYS D 159 REMARK 465 PRO D 160 REMARK 465 GLY D 161 REMARK 465 PRO D 162 REMARK 465 ALA D 163 REMARK 465 LEU D 164 REMARK 465 TYR D 165 REMARK 465 GLU D 166 REMARK 465 GLU D 167 REMARK 465 ASN D 168 REMARK 465 ALA D 169 REMARK 465 LEU D 170 REMARK 465 LYS D 171 REMARK 465 GLY D 172 REMARK 465 LYS D 173 REMARK 465 ILE D 174 REMARK 465 ASP D 175 REMARK 465 ASP D 176 REMARK 465 PRO D 177 REMARK 465 ASN D 178 REMARK 465 SER D 179 REMARK 465 TYR D 180 REMARK 465 VAL D 181 REMARK 465 PRO D 182 REMARK 465 ASP D 183 REMARK 465 ALA D 184 REMARK 465 VAL D 185 REMARK 465 GLN D 186 REMARK 465 GLU D 187 REMARK 465 ALA D 188 REMARK 465 TYR D 189 REMARK 465 LYS D 190 REMARK 465 ASN D 191 REMARK 465 LEU D 192 REMARK 465 ASP D 193 REMARK 465 SER D 194 REMARK 465 THR D 195 REMARK 465 SER D 196 REMARK 465 THR D 197 REMARK 465 LEU D 198 REMARK 465 THR D 199 REMARK 465 GLU D 200 REMARK 465 GLU D 201 REMARK 465 ASN D 202 REMARK 465 PHE D 203 REMARK 465 GLY D 204 REMARK 465 LYS D 205 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 211 CG CD CE NZ REMARK 480 GLU A 215 CG CD OE1 OE2 REMARK 480 ASP A 219 CG OD1 OD2 REMARK 480 PHE A 224 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG A 294 NE CZ NH1 NH2 REMARK 480 GLN A 320 CG CD OE1 NE2 REMARK 480 LYS A 323 CG CD CE NZ REMARK 480 LYS B 211 CG CD CE NZ REMARK 480 LYS B 214 CD CE NZ REMARK 480 GLU B 215 CG CD OE1 OE2 REMARK 480 ASP B 219 CG OD1 OD2 REMARK 480 PHE B 224 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 323 CG CD CE NZ REMARK 480 LYS C 211 CG CD CE NZ REMARK 480 ASP C 219 CG OD1 OD2 REMARK 480 PHE C 224 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG C 287 CD NE CZ NH1 NH2 REMARK 480 ARG C 294 NE CZ NH1 NH2 REMARK 480 GLN C 320 CD OE1 NE2 REMARK 480 LYS C 323 CG CE NZ REMARK 480 LYS D 211 CG CD CE NZ REMARK 480 GLU D 215 CG CD OE1 OE2 REMARK 480 ASP D 219 CG OD1 OD2 REMARK 480 PHE D 224 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG D 294 CG CD NE CZ NH1 NH2 REMARK 480 LYS D 298 CG CD CE NZ REMARK 480 LYS D 308 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 278 OD2 ASP C 278 3454 1.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 C F 14 C4' - C3' - C2' ANGL. DEV. = -6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 219 -8.16 -57.99 REMARK 500 ARG A 287 -77.26 -65.41 REMARK 500 ASP C 219 -7.87 -58.55 REMARK 500 ARG C 287 -77.40 -64.55 REMARK 500 TYR D 207 145.63 -39.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KS4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RESTON EBOLAVIRUS VP35 RNA BINDING DOMAIN REMARK 900 RELATED ID: 3FKE RELATED DB: PDB REMARK 900 STRUCTURE OF ZAIRE EBOLAVIRUS VP35 IID DBREF 3KS8 E 1 18 PDB 3KS8 3KS8 1 18 DBREF 3KS8 F 1 18 PDB 3KS8 3KS8 1 18 DBREF 3KS8 A 160 329 UNP Q8JPY0 VP35_EBORR 160 329 DBREF 3KS8 B 160 329 UNP Q8JPY0 VP35_EBORR 160 329 DBREF 3KS8 C 160 329 UNP Q8JPY0 VP35_EBORR 160 329 DBREF 3KS8 D 160 329 UNP Q8JPY0 VP35_EBORR 160 329 SEQADV 3KS8 MET A 146 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ALA A 147 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS A 148 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS A 149 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS A 150 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS A 151 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS A 152 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS A 153 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 VAL A 154 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP A 155 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP A 156 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP A 157 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP A 158 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 LYS A 159 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 MET B 146 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ALA B 147 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS B 148 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS B 149 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS B 150 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS B 151 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS B 152 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS B 153 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 VAL B 154 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP B 155 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP B 156 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP B 157 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP B 158 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 LYS B 159 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 MET C 146 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ALA C 147 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS C 148 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS C 149 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS C 150 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS C 151 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS C 152 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS C 153 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 VAL C 154 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP C 155 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP C 156 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP C 157 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP C 158 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 LYS C 159 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 MET D 146 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ALA D 147 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS D 148 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS D 149 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS D 150 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS D 151 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS D 152 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 HIS D 153 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 VAL D 154 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP D 155 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP D 156 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP D 157 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 ASP D 158 UNP Q8JPY0 EXPRESSION TAG SEQADV 3KS8 LYS D 159 UNP Q8JPY0 EXPRESSION TAG SEQRES 1 E 18 A G A A G G A G G G A G G SEQRES 2 E 18 G A G G A SEQRES 1 F 18 U C C U C C C U C C C U C SEQRES 2 F 18 C U U C U SEQRES 1 A 184 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 A 184 LYS PRO GLY PRO ALA LEU TYR GLU GLU ASN ALA LEU LYS SEQRES 3 A 184 GLY LYS ILE ASP ASP PRO ASN SER TYR VAL PRO ASP ALA SEQRES 4 A 184 VAL GLN GLU ALA TYR LYS ASN LEU ASP SER THR SER THR SEQRES 5 A 184 LEU THR GLU GLU ASN PHE GLY LYS PRO TYR ILE SER ALA SEQRES 6 A 184 LYS ASP LEU LYS GLU ILE MET TYR ASP HIS LEU PRO GLY SEQRES 7 A 184 PHE GLY THR ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS SEQRES 8 A 184 LYS ILE GLY LYS ASP ASN ASN LEU LEU ASP THR ILE HIS SEQRES 9 A 184 ALA GLU PHE GLN ALA SER LEU ALA ASP GLY ASP SER PRO SEQRES 10 A 184 GLN CYS ALA LEU ILE GLN ILE THR LYS ARG VAL PRO ILE SEQRES 11 A 184 PHE GLN ASP VAL PRO PRO PRO ILE ILE HIS ILE ARG SER SEQRES 12 A 184 ARG GLY ASP ILE PRO ARG ALA CYS GLN LYS SER LEU ARG SEQRES 13 A 184 PRO ALA PRO PRO SER PRO LYS ILE ASP ARG GLY TRP VAL SEQRES 14 A 184 CYS LEU PHE LYS MET GLN ASP GLY LYS THR LEU GLY LEU SEQRES 15 A 184 LYS ILE SEQRES 1 B 184 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 B 184 LYS PRO GLY PRO ALA LEU TYR GLU GLU ASN ALA LEU LYS SEQRES 3 B 184 GLY LYS ILE ASP ASP PRO ASN SER TYR VAL PRO ASP ALA SEQRES 4 B 184 VAL GLN GLU ALA TYR LYS ASN LEU ASP SER THR SER THR SEQRES 5 B 184 LEU THR GLU GLU ASN PHE GLY LYS PRO TYR ILE SER ALA SEQRES 6 B 184 LYS ASP LEU LYS GLU ILE MET TYR ASP HIS LEU PRO GLY SEQRES 7 B 184 PHE GLY THR ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS SEQRES 8 B 184 LYS ILE GLY LYS ASP ASN ASN LEU LEU ASP THR ILE HIS SEQRES 9 B 184 ALA GLU PHE GLN ALA SER LEU ALA ASP GLY ASP SER PRO SEQRES 10 B 184 GLN CYS ALA LEU ILE GLN ILE THR LYS ARG VAL PRO ILE SEQRES 11 B 184 PHE GLN ASP VAL PRO PRO PRO ILE ILE HIS ILE ARG SER SEQRES 12 B 184 ARG GLY ASP ILE PRO ARG ALA CYS GLN LYS SER LEU ARG SEQRES 13 B 184 PRO ALA PRO PRO SER PRO LYS ILE ASP ARG GLY TRP VAL SEQRES 14 B 184 CYS LEU PHE LYS MET GLN ASP GLY LYS THR LEU GLY LEU SEQRES 15 B 184 LYS ILE SEQRES 1 C 184 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 C 184 LYS PRO GLY PRO ALA LEU TYR GLU GLU ASN ALA LEU LYS SEQRES 3 C 184 GLY LYS ILE ASP ASP PRO ASN SER TYR VAL PRO ASP ALA SEQRES 4 C 184 VAL GLN GLU ALA TYR LYS ASN LEU ASP SER THR SER THR SEQRES 5 C 184 LEU THR GLU GLU ASN PHE GLY LYS PRO TYR ILE SER ALA SEQRES 6 C 184 LYS ASP LEU LYS GLU ILE MET TYR ASP HIS LEU PRO GLY SEQRES 7 C 184 PHE GLY THR ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS SEQRES 8 C 184 LYS ILE GLY LYS ASP ASN ASN LEU LEU ASP THR ILE HIS SEQRES 9 C 184 ALA GLU PHE GLN ALA SER LEU ALA ASP GLY ASP SER PRO SEQRES 10 C 184 GLN CYS ALA LEU ILE GLN ILE THR LYS ARG VAL PRO ILE SEQRES 11 C 184 PHE GLN ASP VAL PRO PRO PRO ILE ILE HIS ILE ARG SER SEQRES 12 C 184 ARG GLY ASP ILE PRO ARG ALA CYS GLN LYS SER LEU ARG SEQRES 13 C 184 PRO ALA PRO PRO SER PRO LYS ILE ASP ARG GLY TRP VAL SEQRES 14 C 184 CYS LEU PHE LYS MET GLN ASP GLY LYS THR LEU GLY LEU SEQRES 15 C 184 LYS ILE SEQRES 1 D 184 MET ALA HIS HIS HIS HIS HIS HIS VAL ASP ASP ASP ASP SEQRES 2 D 184 LYS PRO GLY PRO ALA LEU TYR GLU GLU ASN ALA LEU LYS SEQRES 3 D 184 GLY LYS ILE ASP ASP PRO ASN SER TYR VAL PRO ASP ALA SEQRES 4 D 184 VAL GLN GLU ALA TYR LYS ASN LEU ASP SER THR SER THR SEQRES 5 D 184 LEU THR GLU GLU ASN PHE GLY LYS PRO TYR ILE SER ALA SEQRES 6 D 184 LYS ASP LEU LYS GLU ILE MET TYR ASP HIS LEU PRO GLY SEQRES 7 D 184 PHE GLY THR ALA PHE HIS GLN LEU VAL GLN VAL ILE CYS SEQRES 8 D 184 LYS ILE GLY LYS ASP ASN ASN LEU LEU ASP THR ILE HIS SEQRES 9 D 184 ALA GLU PHE GLN ALA SER LEU ALA ASP GLY ASP SER PRO SEQRES 10 D 184 GLN CYS ALA LEU ILE GLN ILE THR LYS ARG VAL PRO ILE SEQRES 11 D 184 PHE GLN ASP VAL PRO PRO PRO ILE ILE HIS ILE ARG SER SEQRES 12 D 184 ARG GLY ASP ILE PRO ARG ALA CYS GLN LYS SER LEU ARG SEQRES 13 D 184 PRO ALA PRO PRO SER PRO LYS ILE ASP ARG GLY TRP VAL SEQRES 14 D 184 CYS LEU PHE LYS MET GLN ASP GLY LYS THR LEU GLY LEU SEQRES 15 D 184 LYS ILE FORMUL 7 HOH *150(H2 O) HELIX 1 1 SER A 209 ASP A 219 1 11 HELIX 2 2 THR A 226 ASN A 243 1 18 HELIX 3 3 LEU A 244 ASP A 258 1 15 HELIX 4 4 SER A 261 VAL A 273 1 13 HELIX 5 5 PRO A 274 ASP A 278 5 5 HELIX 6 6 SER A 288 ILE A 292 5 5 HELIX 7 7 PRO A 293 LYS A 298 5 6 HELIX 8 8 LYS A 308 ARG A 311 5 4 HELIX 9 9 SER B 209 LEU B 221 1 13 HELIX 10 10 THR B 226 ASN B 242 1 17 HELIX 11 11 LEU B 244 ASP B 258 1 15 HELIX 12 12 SER B 261 VAL B 273 1 13 HELIX 13 13 PRO B 274 ASP B 278 5 5 HELIX 14 14 SER B 288 ILE B 292 5 5 HELIX 15 15 PRO B 293 LYS B 298 5 6 HELIX 16 16 LYS B 308 ARG B 311 5 4 HELIX 17 17 SER C 209 ASP C 219 1 11 HELIX 18 18 THR C 226 ASN C 243 1 18 HELIX 19 19 LEU C 244 ASP C 258 1 15 HELIX 20 20 SER C 261 VAL C 273 1 13 HELIX 21 21 PRO C 274 ASP C 278 5 5 HELIX 22 22 SER C 288 ILE C 292 5 5 HELIX 23 23 PRO C 293 LYS C 298 5 6 HELIX 24 24 LYS C 308 ARG C 311 5 4 HELIX 25 25 SER D 209 LEU D 221 1 13 HELIX 26 26 THR D 226 ASN D 242 1 17 HELIX 27 27 LEU D 244 ASP D 258 1 15 HELIX 28 28 SER D 261 VAL D 273 1 13 HELIX 29 29 PRO D 274 ASP D 278 5 5 HELIX 30 30 SER D 288 ILE D 292 5 5 HELIX 31 31 PRO D 293 LYS D 298 1 6 HELIX 32 32 LYS D 308 ARG D 311 5 4 SHEET 1 A 4 ILE A 283 HIS A 285 0 SHEET 2 A 4 TRP A 313 LYS A 318 1 O LEU A 316 N ILE A 284 SHEET 3 A 4 THR A 324 LYS A 328 -1 O LEU A 325 N PHE A 317 SHEET 4 A 4 LEU A 300 ARG A 301 -1 N ARG A 301 O GLY A 326 SHEET 1 B 4 ILE B 283 HIS B 285 0 SHEET 2 B 4 TRP B 313 LYS B 318 1 O LEU B 316 N ILE B 284 SHEET 3 B 4 THR B 324 LYS B 328 -1 O LEU B 325 N PHE B 317 SHEET 4 B 4 LEU B 300 ARG B 301 -1 N ARG B 301 O GLY B 326 SHEET 1 C 4 ILE C 283 HIS C 285 0 SHEET 2 C 4 TRP C 313 LYS C 318 1 O LEU C 316 N ILE C 284 SHEET 3 C 4 THR C 324 LYS C 328 -1 O LEU C 325 N PHE C 317 SHEET 4 C 4 LEU C 300 ARG C 301 -1 N ARG C 301 O GLY C 326 SHEET 1 D 4 ILE D 283 HIS D 285 0 SHEET 2 D 4 TRP D 313 LYS D 318 1 O LEU D 316 N ILE D 284 SHEET 3 D 4 THR D 324 LYS D 328 -1 O LEU D 325 N PHE D 317 SHEET 4 D 4 LEU D 300 ARG D 301 -1 N ARG D 301 O GLY D 326 CRYST1 85.685 85.685 108.812 90.00 90.00 120.00 P 31 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011671 0.006738 0.000000 0.00000 SCALE2 0.000000 0.013476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009190 0.00000