HEADER LIGASE 24-NOV-09 3KT0 TITLE CRYSTAL STRUCTURE OF S. CEREVISIAE TRYPTOPHANYL-TRNA SYNTHETASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPTOPHANYL-TRNA SYNTHETASE, CYTOPLASMIC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRYPTOPHAN--TRNA LIGASE, TRPRS; COMPND 5 EC: 6.1.1.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TRPS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3E KEYWDS TRYPTOPHANYL-TRNA SYNTHETASE, ROSSMANN FOLD, S. CEREVISIAE, KEYWDS 2 AMINOACYL-TRNA SYNTHETASE, ATP-BINDING, CYTOPLASM, LIGASE, KEYWDS 3 NUCLEOTIDE-BINDING, PROTEIN BIOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR M.ZHOU,X.DONG,C.ZHONG,N.SHEN,J.DING REVDAT 4 01-NOV-23 3KT0 1 REMARK SEQADV REVDAT 3 01-NOV-17 3KT0 1 REMARK REVDAT 2 16-JUN-10 3KT0 1 JRNL REVDAT 1 16-FEB-10 3KT0 0 JRNL AUTH M.ZHOU,X.DONG,N.SHEN,C.ZHONG,J.DING JRNL TITL CRYSTAL STRUCTURES OF SACCHAROMYCES CEREVISIAE JRNL TITL 2 TRYPTOPHANYL-TRNA SYNTHETASE: NEW INSIGHTS INTO THE JRNL TITL 3 MECHANISM OF TRYPTOPHAN ACTIVATION AND IMPLICATIONS FOR JRNL TITL 4 ANTI-FUNGAL DRUG DESIGN JRNL REF NUCLEIC ACIDS RES. V. 38 3399 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20123733 JRNL DOI 10.1093/NAR/GKP1254 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 29427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1471 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2058 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.2370 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3025 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.88000 REMARK 3 B22 (A**2) : 1.88000 REMARK 3 B33 (A**2) : -3.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.665 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3117 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4200 ; 1.075 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 371 ; 5.283 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;33.777 ;24.133 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 549 ;14.258 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;12.437 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 448 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2366 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1466 ; 0.193 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2154 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 161 ; 0.120 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 66 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.086 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1918 ; 1.456 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3017 ; 1.950 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1341 ; 2.486 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1183 ; 3.948 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3259 ; 1.913 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 140 ;10.112 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3040 ; 1.157 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KT0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-NOV-09. REMARK 100 THE DEPOSITION ID IS D_1000056410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29469 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.58600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1O5T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES BUFFER, 0.05M CSCL, 30% V/V REMARK 280 JEFFAMINE M-600 REAGENT, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 156.89200 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 27.95600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 27.95600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 235.33800 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 27.95600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 27.95600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 78.44600 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 27.95600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 27.95600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 235.33800 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 27.95600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 27.95600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 78.44600 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 156.89200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 ASP A 4 REMARK 465 GLU A 5 REMARK 465 THR A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 LYS A 9 REMARK 465 VAL A 10 REMARK 465 THR A 11 REMARK 465 GLN A 12 REMARK 465 GLN A 13 REMARK 465 VAL A 14 REMARK 465 SER A 15 REMARK 465 GLU A 16 REMARK 465 LEU A 17 REMARK 465 LYS A 18 REMARK 465 SER A 19 REMARK 465 THR A 20 REMARK 465 ASP A 21 REMARK 465 VAL A 22 REMARK 465 LYS A 23 REMARK 465 GLU A 24 REMARK 465 GLN A 25 REMARK 465 VAL A 26 REMARK 465 VAL A 27 REMARK 465 THR A 28 REMARK 465 PRO A 29 REMARK 465 TRP A 30 REMARK 465 ASP A 31 REMARK 465 VAL A 32 REMARK 465 GLU A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 VAL A 36 REMARK 465 ASP A 37 REMARK 465 GLU A 38 REMARK 465 GLN A 39 REMARK 465 GLY A 40 REMARK 465 ARG A 41 REMARK 465 ALA A 42 REMARK 465 GLN A 43 REMARK 465 ASN A 44 REMARK 465 SER A 292 REMARK 465 THR A 293 REMARK 465 THR A 294 REMARK 465 LYS A 295 REMARK 465 MET A 296 REMARK 465 SER A 297 REMARK 465 ALA A 298 REMARK 465 SER A 299 REMARK 465 LYS A 426 REMARK 465 THR A 427 REMARK 465 LYS A 428 REMARK 465 GLN A 429 REMARK 465 GLU A 430 REMARK 465 LYS A 431 REMARK 465 LYS A 432 REMARK 465 HIS A 433 REMARK 465 HIS A 434 REMARK 465 HIS A 435 REMARK 465 HIS A 436 REMARK 465 HIS A 437 REMARK 465 HIS A 438 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 355 90.09 -166.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE LIGAND EMN IS A PART OF JEFFAMINE M-600 REAGENT. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EMN A 439 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KT3 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH TRPAMP REMARK 900 RELATED ID: 3KT6 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH TRP REMARK 900 RELATED ID: 3KT8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN COMPLEX WITH L-TRYPTOPHANAMIDE DBREF 3KT0 A 1 432 UNP Q12109 SYWC_YEAST 1 432 SEQADV 3KT0 HIS A 433 UNP Q12109 EXPRESSION TAG SEQADV 3KT0 HIS A 434 UNP Q12109 EXPRESSION TAG SEQADV 3KT0 HIS A 435 UNP Q12109 EXPRESSION TAG SEQADV 3KT0 HIS A 436 UNP Q12109 EXPRESSION TAG SEQADV 3KT0 HIS A 437 UNP Q12109 EXPRESSION TAG SEQADV 3KT0 HIS A 438 UNP Q12109 EXPRESSION TAG SEQRES 1 A 438 MET SER ASN ASP GLU THR VAL GLU LYS VAL THR GLN GLN SEQRES 2 A 438 VAL SER GLU LEU LYS SER THR ASP VAL LYS GLU GLN VAL SEQRES 3 A 438 VAL THR PRO TRP ASP VAL GLU GLY GLY VAL ASP GLU GLN SEQRES 4 A 438 GLY ARG ALA GLN ASN ILE ASP TYR ASP LYS LEU ILE LYS SEQRES 5 A 438 GLN PHE GLY THR LYS PRO VAL ASN GLU GLU THR LEU LYS SEQRES 6 A 438 ARG PHE LYS GLN VAL THR GLY ARG GLU PRO HIS HIS PHE SEQRES 7 A 438 LEU ARG LYS GLY LEU PHE PHE SER GLU ARG ASP PHE THR SEQRES 8 A 438 LYS ILE LEU ASP LEU TYR GLU GLN GLY LYS PRO PHE PHE SEQRES 9 A 438 LEU TYR THR GLY ARG GLY PRO SER SER ASP SER MET HIS SEQRES 10 A 438 LEU GLY HIS MET ILE PRO PHE VAL PHE THR LYS TRP LEU SEQRES 11 A 438 GLN GLU VAL PHE ASP VAL PRO LEU VAL ILE GLU LEU THR SEQRES 12 A 438 ASP ASP GLU LYS PHE LEU PHE LYS HIS LYS LEU THR ILE SEQRES 13 A 438 ASN ASP VAL LYS ASN PHE ALA ARG GLU ASN ALA LYS ASP SEQRES 14 A 438 ILE ILE ALA VAL GLY PHE ASP PRO LYS ASN THR PHE ILE SEQRES 15 A 438 PHE SER ASP LEU GLN TYR MET GLY GLY ALA PHE TYR GLU SEQRES 16 A 438 THR VAL VAL ARG VAL SER ARG GLN ILE THR GLY SER THR SEQRES 17 A 438 ALA LYS ALA VAL PHE GLY PHE ASN ASP SER ASP CYS ILE SEQRES 18 A 438 GLY LYS PHE HIS PHE ALA SER ILE GLN ILE ALA THR ALA SEQRES 19 A 438 PHE PRO SER SER PHE PRO ASN VAL LEU GLY LEU PRO ASP SEQRES 20 A 438 LYS THR PRO CYS LEU ILE PRO CYS ALA ILE ASP GLN ASP SEQRES 21 A 438 PRO TYR PHE ARG VAL CYS ARG ASP VAL ALA ASP LYS LEU SEQRES 22 A 438 LYS TYR SER LYS PRO ALA LEU LEU HIS SER ARG PHE PHE SEQRES 23 A 438 PRO ALA LEU GLN GLY SER THR THR LYS MET SER ALA SER SEQRES 24 A 438 ASP ASP THR THR ALA ILE PHE MET THR ASP THR PRO LYS SEQRES 25 A 438 GLN ILE GLN LYS LYS ILE ASN LYS TYR ALA PHE SER GLY SEQRES 26 A 438 GLY GLN VAL SER ALA ASP LEU HIS ARG GLU LEU GLY GLY SEQRES 27 A 438 ASN PRO ASP VAL ASP VAL ALA TYR GLN TYR LEU SER PHE SEQRES 28 A 438 PHE LYS ASP ASP ASP VAL PHE LEU LYS GLU CYS TYR ASP SEQRES 29 A 438 LYS TYR LYS SER GLY GLU LEU LEU SER GLY GLU MET LYS SEQRES 30 A 438 LYS LEU CYS ILE GLU THR LEU GLN GLU PHE VAL LYS ALA SEQRES 31 A 438 PHE GLN GLU ARG ARG ALA GLN VAL ASP GLU GLU THR LEU SEQRES 32 A 438 ASP LYS PHE MET VAL PRO HIS LYS LEU VAL TRP GLY GLU SEQRES 33 A 438 LYS GLU ARG LEU VAL ALA PRO LYS PRO LYS THR LYS GLN SEQRES 34 A 438 GLU LYS LYS HIS HIS HIS HIS HIS HIS HET EMN A 439 14 HETNAM EMN (2S)-1-{[(2S)-3-(2-METHOXYETHOXY)-2- HETNAM 2 EMN METHYLPROPYL]OXY}PROPAN-2-AMINE FORMUL 2 EMN C10 H23 N O3 FORMUL 3 HOH *140(H2 O) HELIX 1 1 ASP A 46 GLY A 55 1 10 HELIX 2 2 ASN A 60 GLY A 72 1 13 HELIX 3 3 HIS A 76 LYS A 81 1 6 HELIX 4 4 ASP A 89 GLY A 100 1 12 HELIX 5 5 HIS A 120 ASP A 135 1 16 HELIX 6 6 THR A 143 LYS A 151 1 9 HELIX 7 7 THR A 155 ALA A 172 1 18 HELIX 8 8 ASP A 176 LYS A 178 5 3 HELIX 9 9 ASP A 185 MET A 189 1 5 HELIX 10 10 GLY A 190 ARG A 202 1 13 HELIX 11 11 THR A 205 GLY A 214 1 10 HELIX 12 12 CYS A 220 PHE A 226 1 7 HELIX 13 13 PHE A 226 THR A 233 1 8 HELIX 14 14 ALA A 234 PHE A 239 5 6 HELIX 15 15 GLN A 259 LYS A 274 1 16 HELIX 16 16 THR A 310 ALA A 322 1 13 HELIX 17 17 SER A 329 GLY A 337 1 9 HELIX 18 18 ASP A 343 LYS A 353 1 11 HELIX 19 19 ASP A 355 SER A 368 1 14 HELIX 20 20 LEU A 372 GLN A 397 1 26 HELIX 21 21 ASP A 399 VAL A 408 1 10 SHEET 1 A 7 LYS A 57 PRO A 58 0 SHEET 2 A 7 PHE A 84 ARG A 88 -1 O GLU A 87 N LYS A 57 SHEET 3 A 7 ALA A 279 SER A 283 -1 O LEU A 280 N ARG A 88 SHEET 4 A 7 CYS A 251 ALA A 256 1 N ILE A 253 O ALA A 279 SHEET 5 A 7 PHE A 104 ARG A 109 1 N TYR A 106 O LEU A 252 SHEET 6 A 7 LEU A 138 LEU A 142 1 O GLU A 141 N THR A 107 SHEET 7 A 7 THR A 180 SER A 184 1 O PHE A 183 N LEU A 142 SITE 1 AC1 5 TYR A 106 THR A 107 GLY A 108 THR A 143 SITE 2 AC1 5 GLN A 259 CRYST1 55.912 55.912 313.784 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017885 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003187 0.00000