HEADER TRANSCRIPTION REGULATOR 24-NOV-09 3KTB TITLE CRYSTAL STRUCTURE OF ARSENICAL RESISTANCE OPERON TRANS-ACTING TITLE 2 REPRESSOR FROM BACTEROIDES VULGATUS ATCC 8482 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARSENICAL RESISTANCE OPERON TRANS-ACTING REPRESSOR; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: RESIDUES 1-103; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES VULGATUS; SOURCE 3 ORGANISM_TAXID: 435590; SOURCE 4 STRAIN: ATCC 8482; SOURCE 5 GENE: BVU_4185; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS ALPHA-BETA-ALPHA SANDWICH, HELIX-TURN-HELIX, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,B.FELDMANN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 13-JUL-11 3KTB 1 VERSN REVDAT 1 08-DEC-09 3KTB 0 JRNL AUTH Y.KIM,C.TESAR,B.FELDMANN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF ARSENICAL RESISTANCE OPERON JRNL TITL 2 TRANS-ACTING REPRESSOR FROM BACTEROIDES VULGATUS ATCC 8482 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 32257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.3228 - 4.5182 0.99 6040 290 0.1329 0.1683 REMARK 3 2 4.5182 - 3.5888 1.00 5984 357 0.1354 0.1806 REMARK 3 3 3.5888 - 3.1359 1.00 5975 321 0.1729 0.2174 REMARK 3 4 3.1359 - 2.8495 0.98 5927 319 0.1880 0.2338 REMARK 3 5 2.8495 - 2.6455 0.96 5763 303 0.1878 0.2243 REMARK 3 6 2.6455 - 2.4896 0.95 5791 248 0.1867 0.2260 REMARK 3 7 2.4896 - 2.3650 0.93 5586 303 0.1849 0.2399 REMARK 3 8 2.3650 - 2.2621 0.90 5452 303 0.2063 0.2684 REMARK 3 9 2.2621 - 2.1750 0.87 5268 307 0.2419 0.2841 REMARK 3 10 2.1750 - 2.1000 0.83 4939 265 0.2791 0.3325 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 55.02 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.46420 REMARK 3 B22 (A**2) : 1.46420 REMARK 3 B33 (A**2) : -2.92840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3355 REMARK 3 ANGLE : 1.396 4548 REMARK 3 CHIRALITY : 0.091 538 REMARK 3 PLANARITY : 0.006 588 REMARK 3 DIHEDRAL : 19.114 1262 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 33.1719 59.8593 14.8120 REMARK 3 T TENSOR REMARK 3 T11: 0.5007 T22: 0.3115 REMARK 3 T33: 0.3638 T12: -0.1442 REMARK 3 T13: -0.2366 T23: 0.1801 REMARK 3 L TENSOR REMARK 3 L11: 4.1049 L22: 2.3098 REMARK 3 L33: 2.5263 L12: 2.3413 REMARK 3 L13: 1.6697 L23: 1.3042 REMARK 3 S TENSOR REMARK 3 S11: 0.8053 S12: -0.7374 S13: -0.6106 REMARK 3 S21: 1.0460 S22: -0.4615 S23: -0.6812 REMARK 3 S31: 0.1834 S32: -0.2043 S33: -0.2722 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BOTH F+ AND F- ARE USED FOR REFINEMENT REMARK 4 REMARK 4 3KTB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-09. REMARK 100 THE RCSB ID CODE IS RCSB056421. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 15.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.74300 REMARK 200 FOR SHELL : 2.470 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL3000, SHELXS,MLPHARE,RESOLVE,SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CA(OAC)2 0.1 M MES PH 6.5 20% REMARK 280 (W/V) PEG-8000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.95550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.95550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 41.78950 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.95550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.95550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.78950 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 57.95550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 57.95550 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 41.78950 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 57.95550 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 57.95550 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 41.78950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 83020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 115.91100 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 115.91100 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 115.91100 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 115.91100 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 103 REMARK 465 SER C -2 REMARK 465 ASN C -1 REMARK 465 SER D -2 REMARK 465 ASN D -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 17 48.32 -89.90 REMARK 500 ILE A 22 43.02 72.63 REMARK 500 HIS A 68 -10.63 -156.46 REMARK 500 GLN A 86 -34.61 66.79 REMARK 500 GLN B 86 -27.71 80.56 REMARK 500 GLN C 86 -31.37 77.75 REMARK 500 LEU D 17 57.19 -96.60 REMARK 500 GLN D 86 -44.61 79.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 256 DISTANCE = 5.19 ANGSTROMS REMARK 525 HOH A 413 DISTANCE = 5.33 ANGSTROMS REMARK 525 HOH B 277 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH B 337 DISTANCE = 5.61 ANGSTROMS REMARK 525 HOH B 404 DISTANCE = 5.43 ANGSTROMS REMARK 525 HOH B 422 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH C 373 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH D 224 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH D 252 DISTANCE = 6.47 ANGSTROMS REMARK 525 HOH D 262 DISTANCE = 5.12 ANGSTROMS REMARK 525 HOH D 264 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH D 301 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH D 321 DISTANCE = 5.03 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 111 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 367 O REMARK 620 2 ASP D 71 O 64.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 113 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 112 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC38734.1 RELATED DB: TARGETDB DBREF 3KTB A 1 103 UNP A6L7X2 A6L7X2_BACV8 1 103 DBREF 3KTB B 1 103 UNP A6L7X2 A6L7X2_BACV8 1 103 DBREF 3KTB C 1 103 UNP A6L7X2 A6L7X2_BACV8 1 103 DBREF 3KTB D 1 103 UNP A6L7X2 A6L7X2_BACV8 1 103 SEQADV 3KTB SER A -2 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB ASN A -1 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB ALA A 0 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB SER B -2 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB ASN B -1 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB ALA B 0 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB SER C -2 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB ASN C -1 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB ALA C 0 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB SER D -2 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB ASN D -1 UNP A6L7X2 EXPRESSION TAG SEQADV 3KTB ALA D 0 UNP A6L7X2 EXPRESSION TAG SEQRES 1 A 106 SER ASN ALA MSE LYS LYS ILE GLU ILE PHE ASP PRO ALA SEQRES 2 A 106 MSE CYS CYS PRO THR GLY LEU CYS GLY THR ASN ILE ASN SEQRES 3 A 106 PRO GLU LEU MSE ARG ILE ALA VAL VAL ILE GLU SER LEU SEQRES 4 A 106 LYS LYS GLN GLY ILE ILE VAL THR ARG HIS ASN LEU ARG SEQRES 5 A 106 ASP GLU PRO GLN VAL TYR VAL SER ASN LYS THR VAL ASN SEQRES 6 A 106 ASP PHE LEU GLN LYS HIS GLY ALA ASP ALA LEU PRO ILE SEQRES 7 A 106 THR LEU VAL ASP GLY GLU ILE ALA VAL SER GLN THR TYR SEQRES 8 A 106 PRO THR THR LYS GLN MSE SER GLU TRP THR GLY VAL ASN SEQRES 9 A 106 LEU ASP SEQRES 1 B 106 SER ASN ALA MSE LYS LYS ILE GLU ILE PHE ASP PRO ALA SEQRES 2 B 106 MSE CYS CYS PRO THR GLY LEU CYS GLY THR ASN ILE ASN SEQRES 3 B 106 PRO GLU LEU MSE ARG ILE ALA VAL VAL ILE GLU SER LEU SEQRES 4 B 106 LYS LYS GLN GLY ILE ILE VAL THR ARG HIS ASN LEU ARG SEQRES 5 B 106 ASP GLU PRO GLN VAL TYR VAL SER ASN LYS THR VAL ASN SEQRES 6 B 106 ASP PHE LEU GLN LYS HIS GLY ALA ASP ALA LEU PRO ILE SEQRES 7 B 106 THR LEU VAL ASP GLY GLU ILE ALA VAL SER GLN THR TYR SEQRES 8 B 106 PRO THR THR LYS GLN MSE SER GLU TRP THR GLY VAL ASN SEQRES 9 B 106 LEU ASP SEQRES 1 C 106 SER ASN ALA MSE LYS LYS ILE GLU ILE PHE ASP PRO ALA SEQRES 2 C 106 MSE CYS CYS PRO THR GLY LEU CYS GLY THR ASN ILE ASN SEQRES 3 C 106 PRO GLU LEU MSE ARG ILE ALA VAL VAL ILE GLU SER LEU SEQRES 4 C 106 LYS LYS GLN GLY ILE ILE VAL THR ARG HIS ASN LEU ARG SEQRES 5 C 106 ASP GLU PRO GLN VAL TYR VAL SER ASN LYS THR VAL ASN SEQRES 6 C 106 ASP PHE LEU GLN LYS HIS GLY ALA ASP ALA LEU PRO ILE SEQRES 7 C 106 THR LEU VAL ASP GLY GLU ILE ALA VAL SER GLN THR TYR SEQRES 8 C 106 PRO THR THR LYS GLN MSE SER GLU TRP THR GLY VAL ASN SEQRES 9 C 106 LEU ASP SEQRES 1 D 106 SER ASN ALA MSE LYS LYS ILE GLU ILE PHE ASP PRO ALA SEQRES 2 D 106 MSE CYS CYS PRO THR GLY LEU CYS GLY THR ASN ILE ASN SEQRES 3 D 106 PRO GLU LEU MSE ARG ILE ALA VAL VAL ILE GLU SER LEU SEQRES 4 D 106 LYS LYS GLN GLY ILE ILE VAL THR ARG HIS ASN LEU ARG SEQRES 5 D 106 ASP GLU PRO GLN VAL TYR VAL SER ASN LYS THR VAL ASN SEQRES 6 D 106 ASP PHE LEU GLN LYS HIS GLY ALA ASP ALA LEU PRO ILE SEQRES 7 D 106 THR LEU VAL ASP GLY GLU ILE ALA VAL SER GLN THR TYR SEQRES 8 D 106 PRO THR THR LYS GLN MSE SER GLU TRP THR GLY VAL ASN SEQRES 9 D 106 LEU ASP MODRES 3KTB MSE A 1 MET SELENOMETHIONINE MODRES 3KTB MSE A 11 MET SELENOMETHIONINE MODRES 3KTB MSE A 27 MET SELENOMETHIONINE MODRES 3KTB MSE A 94 MET SELENOMETHIONINE MODRES 3KTB MSE B 1 MET SELENOMETHIONINE MODRES 3KTB MSE B 11 MET SELENOMETHIONINE MODRES 3KTB MSE B 27 MET SELENOMETHIONINE MODRES 3KTB MSE B 94 MET SELENOMETHIONINE MODRES 3KTB MSE C 1 MET SELENOMETHIONINE MODRES 3KTB MSE C 11 MET SELENOMETHIONINE MODRES 3KTB MSE C 27 MET SELENOMETHIONINE MODRES 3KTB MSE C 94 MET SELENOMETHIONINE MODRES 3KTB MSE D 1 MET SELENOMETHIONINE MODRES 3KTB MSE D 11 MET SELENOMETHIONINE MODRES 3KTB MSE D 27 MET SELENOMETHIONINE MODRES 3KTB MSE D 94 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 11 8 HET MSE A 27 8 HET MSE A 94 8 HET MSE B 1 8 HET MSE B 11 8 HET MSE B 27 8 HET MSE B 94 8 HET MSE C 1 8 HET MSE C 11 8 HET MSE C 27 8 HET MSE C 94 8 HET MSE D 1 8 HET MSE D 11 8 HET MSE D 27 8 HET MSE D 94 8 HET GOL A 112 6 HET ACY B 111 4 HET ACY C 111 4 HET GOL C 113 6 HET CA D 111 1 HET GOL D 112 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM ACY ACETIC ACID HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 6 ACY 2(C2 H4 O2) FORMUL 9 CA CA 2+ FORMUL 11 HOH *487(H2 O) HELIX 1 1 ASN A 23 GLN A 39 1 17 HELIX 2 2 GLN A 53 ASN A 58 1 6 HELIX 3 3 ASN A 58 LYS A 67 1 10 HELIX 4 4 GLY A 69 LEU A 73 5 5 HELIX 5 5 THR A 90 GLY A 99 1 10 HELIX 6 6 ASN B 23 GLN B 39 1 17 HELIX 7 7 GLU B 51 ASN B 58 1 8 HELIX 8 8 ASN B 58 GLY B 69 1 12 HELIX 9 9 ALA B 70 LEU B 73 5 4 HELIX 10 10 THR B 90 GLY B 99 1 10 HELIX 11 11 ASN C 23 GLN C 39 1 17 HELIX 12 12 GLN C 53 ASN C 58 1 6 HELIX 13 13 ASN C 58 GLY C 69 1 12 HELIX 14 14 ALA C 70 LEU C 73 5 4 HELIX 15 15 THR C 90 GLY C 99 1 10 HELIX 16 16 ASN D 23 GLN D 39 1 17 HELIX 17 17 GLN D 53 ASN D 58 1 6 HELIX 18 18 ASN D 58 GLY D 69 1 12 HELIX 19 19 ALA D 70 LEU D 73 5 4 HELIX 20 20 THR D 90 GLY D 99 1 10 SHEET 1 A 4 THR A 44 ASN A 47 0 SHEET 2 A 4 ILE A 4 ASP A 8 1 N ASP A 8 O HIS A 46 SHEET 3 A 4 ILE A 75 VAL A 78 -1 O ILE A 75 N PHE A 7 SHEET 4 A 4 GLU A 81 VAL A 84 -1 O ALA A 83 N THR A 76 SHEET 1 B 4 THR B 44 ASN B 47 0 SHEET 2 B 4 ILE B 4 ASP B 8 1 N ASP B 8 O HIS B 46 SHEET 3 B 4 ILE B 75 VAL B 78 -1 O LEU B 77 N GLU B 5 SHEET 4 B 4 GLU B 81 SER B 85 -1 O ALA B 83 N THR B 76 SHEET 1 C 4 THR C 44 ASN C 47 0 SHEET 2 C 4 ILE C 4 ASP C 8 1 N ASP C 8 O HIS C 46 SHEET 3 C 4 ILE C 75 VAL C 78 -1 O ILE C 75 N PHE C 7 SHEET 4 C 4 GLU C 81 SER C 85 -1 O ALA C 83 N THR C 76 SHEET 1 D 4 THR D 44 ASN D 47 0 SHEET 2 D 4 ILE D 4 ASP D 8 1 N ASP D 8 O HIS D 46 SHEET 3 D 4 ILE D 75 VAL D 78 -1 O ILE D 75 N PHE D 7 SHEET 4 D 4 GLU D 81 SER D 85 -1 O ALA D 83 N THR D 76 SSBOND 1 CYS A 12 CYS C 12 1555 1555 2.07 SSBOND 2 CYS A 13 CYS A 18 1555 1555 2.08 SSBOND 3 CYS B 12 CYS D 12 1555 1555 2.07 SSBOND 4 CYS B 13 CYS B 18 1555 1555 2.05 SSBOND 5 CYS C 13 CYS C 18 1555 1555 2.08 SSBOND 6 CYS D 13 CYS D 18 1555 1555 2.06 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C MSE A 11 N CYS A 12 1555 1555 1.32 LINK C MSE A 27 N ARG A 28 1555 1555 1.33 LINK C MSE A 94 N SER A 95 1555 1555 1.33 LINK C MSE B 1 N LYS B 2 1555 1555 1.33 LINK C MSE B 11 N CYS B 12 1555 1555 1.33 LINK C MSE B 27 N ARG B 28 1555 1555 1.33 LINK C MSE B 94 N SER B 95 1555 1555 1.33 LINK C MSE C 1 N LYS C 2 1555 1555 1.33 LINK C MSE C 11 N CYS C 12 1555 1555 1.33 LINK C MSE C 27 N ARG C 28 1555 1555 1.34 LINK C MSE C 94 N SER C 95 1555 1555 1.33 LINK C MSE D 1 N LYS D 2 1555 1555 1.34 LINK C MSE D 11 N CYS D 12 1555 1555 1.32 LINK C MSE D 27 N ARG D 28 1555 1555 1.34 LINK C MSE D 94 N SER D 95 1555 1555 1.32 LINK CA CA D 111 O HOH D 367 1555 1555 2.88 LINK O ASP D 71 CA CA D 111 1555 1555 2.95 CISPEP 1 LEU A 73 PRO A 74 0 8.72 CISPEP 2 LEU B 73 PRO B 74 0 2.73 CISPEP 3 LEU C 73 PRO C 74 0 1.33 CISPEP 4 LEU D 73 PRO D 74 0 6.47 SITE 1 AC1 5 ALA A 10 CYS A 12 HOH A 392 ALA C 10 SITE 2 AC1 5 ARG C 49 SITE 1 AC2 5 CYS B 12 GLY B 16 CYS B 18 ARG D 49 SITE 2 AC2 5 GOL D 112 SITE 1 AC3 6 HOH A 114 MSE C 11 CYS C 12 GLY C 16 SITE 2 AC3 6 HOH C 285 HOH C 486 SITE 1 AC4 5 SER A -2 GLY A 99 HOH A 379 SER C 85 SITE 2 AC4 5 GLN C 86 SITE 1 AC5 3 ASP D 71 GLN D 86 HOH D 367 SITE 1 AC6 3 ACY B 111 ALA D 10 ARG D 49 CRYST1 115.911 115.911 83.579 90.00 90.00 90.00 I 4 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008627 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011965 0.00000