data_3KTU # _entry.id 3KTU # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KTU pdb_00003ktu 10.2210/pdb3ktu/pdb NDB NA0405 ? ? RCSB RCSB056439 ? ? WWPDB D_1000056439 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3IH7 'HOGG1 disulphide cross-linked to undamaged DNA' unspecified PDB 1EBM 'HOGG1 COMPLEXED WITH OXOG CONTAINING DNA' unspecified # _pdbx_database_status.entry_id 3KTU _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-11-26 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Verdine, G.L.' 1 'Lee, S.M.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural investigation of hOGG1 bound to a fluorinated oxoG analog' 'to be published' ? ? ? ? ? ? ? 0353 ? ? ? 1 'A Catalytic Checkpoint in Base Excision by the Human 8-Oxoguanine DNA Glycosylase hOGG1' 'to be published' ? ? ? ? ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Verdine, G.L.' 1 ? primary 'Lee, S.M.' 2 ? 1 'Verdine, G.L.' 3 ? 1 'Crenshaw, C.M.' 4 ? 1 'Oo, K.S.' 5 ? 1 'Kutchukian, P.S.' 6 ? # _cell.entry_id 3KTU _cell.length_a 92.400 _cell.length_b 92.400 _cell.length_c 212.500 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KTU _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'N-glycosylase/DNA lyase' 35727.469 1 '3.2.2.-, 4.2.99.18' ? 'sequence database residues 12-325' ? 2 polymer syn ;DNA (5'-D(*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*C)-3') ; 4016.623 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*TP*CP*CP*AP*(FDG)P*GP*TP*CP*TP*AP*C)-3') ; 3672.369 1 ? ? ? ? 4 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 5 water nat water 18.015 72 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name '8-oxoguanine DNA glycosylase, DNA-(apurinic or apyrimidinic site) lyase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;SEFGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRP TPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSCNNIARITGMVERLCQAFGP RLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGT KVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ ; ;SEFGHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRP TPDELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSCNNIARITGMVERLCQAFGP RLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGT KVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ ; A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DT)(DA)(DG)(DA)(DC)(DC)(DT)(DG)(DG)(DA)(DC)' GGTAGACCTGGAC B ? 3 polydeoxyribonucleotide no yes '(DG)(DT)(DC)(DC)(DA)(FDG)(DG)(DT)(DC)(DT)(DA)(DC)' GTCCAXGTCTAC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 PHE n 1 4 GLY n 1 5 HIS n 1 6 ARG n 1 7 THR n 1 8 LEU n 1 9 ALA n 1 10 SER n 1 11 THR n 1 12 PRO n 1 13 ALA n 1 14 LEU n 1 15 TRP n 1 16 ALA n 1 17 SER n 1 18 ILE n 1 19 PRO n 1 20 CYS n 1 21 PRO n 1 22 ARG n 1 23 SER n 1 24 GLU n 1 25 LEU n 1 26 ARG n 1 27 LEU n 1 28 ASP n 1 29 LEU n 1 30 VAL n 1 31 LEU n 1 32 PRO n 1 33 SER n 1 34 GLY n 1 35 GLN n 1 36 SER n 1 37 PHE n 1 38 ARG n 1 39 TRP n 1 40 ARG n 1 41 GLU n 1 42 GLN n 1 43 SER n 1 44 PRO n 1 45 ALA n 1 46 HIS n 1 47 TRP n 1 48 SER n 1 49 GLY n 1 50 VAL n 1 51 LEU n 1 52 ALA n 1 53 ASP n 1 54 GLN n 1 55 VAL n 1 56 TRP n 1 57 THR n 1 58 LEU n 1 59 THR n 1 60 GLN n 1 61 THR n 1 62 GLU n 1 63 GLU n 1 64 GLN n 1 65 LEU n 1 66 HIS n 1 67 CYS n 1 68 THR n 1 69 VAL n 1 70 TYR n 1 71 ARG n 1 72 GLY n 1 73 ASP n 1 74 LYS n 1 75 SER n 1 76 GLN n 1 77 ALA n 1 78 SER n 1 79 ARG n 1 80 PRO n 1 81 THR n 1 82 PRO n 1 83 ASP n 1 84 GLU n 1 85 LEU n 1 86 GLU n 1 87 ALA n 1 88 VAL n 1 89 ARG n 1 90 LYS n 1 91 TYR n 1 92 PHE n 1 93 GLN n 1 94 LEU n 1 95 ASP n 1 96 VAL n 1 97 THR n 1 98 LEU n 1 99 ALA n 1 100 GLN n 1 101 LEU n 1 102 TYR n 1 103 HIS n 1 104 HIS n 1 105 TRP n 1 106 GLY n 1 107 SER n 1 108 VAL n 1 109 ASP n 1 110 SER n 1 111 HIS n 1 112 PHE n 1 113 GLN n 1 114 GLU n 1 115 VAL n 1 116 ALA n 1 117 GLN n 1 118 LYS n 1 119 PHE n 1 120 GLN n 1 121 GLY n 1 122 VAL n 1 123 ARG n 1 124 LEU n 1 125 LEU n 1 126 ARG n 1 127 GLN n 1 128 ASP n 1 129 PRO n 1 130 ILE n 1 131 GLU n 1 132 CYS n 1 133 LEU n 1 134 PHE n 1 135 SER n 1 136 PHE n 1 137 ILE n 1 138 CYS n 1 139 SER n 1 140 SER n 1 141 CYS n 1 142 ASN n 1 143 ASN n 1 144 ILE n 1 145 ALA n 1 146 ARG n 1 147 ILE n 1 148 THR n 1 149 GLY n 1 150 MET n 1 151 VAL n 1 152 GLU n 1 153 ARG n 1 154 LEU n 1 155 CYS n 1 156 GLN n 1 157 ALA n 1 158 PHE n 1 159 GLY n 1 160 PRO n 1 161 ARG n 1 162 LEU n 1 163 ILE n 1 164 GLN n 1 165 LEU n 1 166 ASP n 1 167 ASP n 1 168 VAL n 1 169 THR n 1 170 TYR n 1 171 HIS n 1 172 GLY n 1 173 PHE n 1 174 PRO n 1 175 SER n 1 176 LEU n 1 177 GLN n 1 178 ALA n 1 179 LEU n 1 180 ALA n 1 181 GLY n 1 182 PRO n 1 183 GLU n 1 184 VAL n 1 185 GLU n 1 186 ALA n 1 187 HIS n 1 188 LEU n 1 189 ARG n 1 190 LYS n 1 191 LEU n 1 192 GLY n 1 193 LEU n 1 194 GLY n 1 195 TYR n 1 196 ARG n 1 197 ALA n 1 198 ARG n 1 199 TYR n 1 200 VAL n 1 201 SER n 1 202 ALA n 1 203 SER n 1 204 ALA n 1 205 ARG n 1 206 ALA n 1 207 ILE n 1 208 LEU n 1 209 GLU n 1 210 GLU n 1 211 GLN n 1 212 GLY n 1 213 GLY n 1 214 LEU n 1 215 ALA n 1 216 TRP n 1 217 LEU n 1 218 GLN n 1 219 GLN n 1 220 LEU n 1 221 ARG n 1 222 GLU n 1 223 SER n 1 224 SER n 1 225 TYR n 1 226 GLU n 1 227 GLU n 1 228 ALA n 1 229 HIS n 1 230 LYS n 1 231 ALA n 1 232 LEU n 1 233 CYS n 1 234 ILE n 1 235 LEU n 1 236 PRO n 1 237 GLY n 1 238 VAL n 1 239 GLY n 1 240 THR n 1 241 LYS n 1 242 VAL n 1 243 ALA n 1 244 ASP n 1 245 CYS n 1 246 ILE n 1 247 CYS n 1 248 LEU n 1 249 MET n 1 250 ALA n 1 251 LEU n 1 252 ASP n 1 253 LYS n 1 254 PRO n 1 255 GLN n 1 256 ALA n 1 257 VAL n 1 258 PRO n 1 259 VAL n 1 260 ASP n 1 261 VAL n 1 262 HIS n 1 263 MET n 1 264 TRP n 1 265 HIS n 1 266 ILE n 1 267 ALA n 1 268 GLN n 1 269 ARG n 1 270 ASP n 1 271 TYR n 1 272 SER n 1 273 TRP n 1 274 HIS n 1 275 PRO n 1 276 THR n 1 277 THR n 1 278 SER n 1 279 GLN n 1 280 ALA n 1 281 LYS n 1 282 GLY n 1 283 PRO n 1 284 SER n 1 285 PRO n 1 286 GLN n 1 287 THR n 1 288 ASN n 1 289 LYS n 1 290 GLU n 1 291 LEU n 1 292 GLY n 1 293 ASN n 1 294 PHE n 1 295 PHE n 1 296 ARG n 1 297 SER n 1 298 LEU n 1 299 TRP n 1 300 GLY n 1 301 PRO n 1 302 TYR n 1 303 ALA n 1 304 GLY n 1 305 TRP n 1 306 ALA n 1 307 GLN n 1 308 ALA n 1 309 VAL n 1 310 LEU n 1 311 PHE n 1 312 SER n 1 313 ALA n 1 314 ASP n 1 315 LEU n 1 316 ARG n 1 317 GLN n 2 1 DG n 2 2 DG n 2 3 DT n 2 4 DA n 2 5 DG n 2 6 DA n 2 7 DC n 2 8 DC n 2 9 DT n 2 10 DG n 2 11 DG n 2 12 DA n 2 13 DC n 3 1 DG n 3 2 DT n 3 3 DC n 3 4 DC n 3 5 DA n 3 6 FDG n 3 7 DG n 3 8 DT n 3 9 DC n 3 10 DT n 3 11 DA n 3 12 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MMH, MUTM, OGG1, OGH1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)PLYSS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET30a _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 'SYNTHETIC DNA' 3 1 sample ? ? 'synthetic construct' ? 32630 'SYNTHETIC DNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP OGG1_HUMAN O15527 1 ;GHRTLASTPALWASIPCPRSELRLDLVLPSGQSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPD ELEAVRKYFQLDVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLI QLDDVTYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRESSYEEAHKALCILPGVGTKVA DCICLMALDKPQAVPVDVHMWHIAQRDYSWHPTTSQAKGPSPQTNKELGNFFRSLWGPYAGWAQAVLFSADLRQ ; 12 ? 2 PDB 3KTU 3KTU 2 GGTAGACCTGGAC 1 ? 3 PDB 3KTU 3KTU 3 'GTCCA(FDG)GTCTAC' 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3KTU A 4 ? 317 ? O15527 12 ? 325 ? 12 325 2 2 3KTU B 1 ? 13 ? 3KTU 1 ? 13 ? 1 13 3 3 3KTU C 1 ? 12 ? 3KTU 18 ? 29 ? 18 29 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3KTU SER A 1 ? UNP O15527 ? ? 'expression tag' 9 1 1 3KTU GLU A 2 ? UNP O15527 ? ? 'expression tag' 10 2 1 3KTU PHE A 3 ? UNP O15527 ? ? 'expression tag' 11 3 1 3KTU CYS A 141 ? UNP O15527 ASN 149 'engineered mutation' 149 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 FDG 'DNA linking' n '2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-7,9-dihydro-1H-purine-6,8-dione' ? 'C10 H13 F N5 O8 P' 381.211 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3KTU _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.03 _exptl_crystal.density_percent_sol 59.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'Calcium Chloride, Sodium Cacodylate, pH 6.0, PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 277K' # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Calcium Chloride' ? ? ? 1 2 2 'Calcium Chloride' ? ? ? 1 3 1 'Sodium Cacodylate' ? ? ? 1 4 2 'Sodium Cacodylate' ? ? ? 1 5 1 'PEG 8000' ? ? ? 1 6 2 'PEG 8000' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2008-02-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 24-ID-C' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 24-ID-C _diffrn_source.pdbx_wavelength 0.979 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 3KTU _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.300 _reflns.number_obs 24522 _reflns.number_all ? _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.11200 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 14.3000 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.200 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.30 _reflns_shell.d_res_low 2.38 _reflns_shell.percent_possible_all 100.0 _reflns_shell.Rmerge_I_obs 0.39700 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 9.50 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 3KTU _refine.ls_number_reflns_obs 23379 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.21 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 94.7 _refine.ls_R_factor_obs 0.225 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.225 _refine.ls_R_factor_R_free 0.257 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.400 _refine.ls_number_reflns_R_free 2316 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min 1.00 _refine.occupancy_max 1.00 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 58.94 _refine.aniso_B[1][1] 4.66600 _refine.aniso_B[2][2] 4.66600 _refine.aniso_B[3][3] -9.3330 _refine.aniso_B[1][2] 0.00000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol 42.65 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1EBM' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2485 _refine_hist.pdbx_number_atoms_nucleic_acid 510 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 3069 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 25.21 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.351 1.500 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.198 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.012 2.000 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.028 2.500 ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM ? 'X-RAY DIFFRACTION' 2 DNA-RNA_REP.PARAM ? 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM ? 'X-RAY DIFFRACTION' 4 ION.PARAM ? 'X-RAY DIFFRACTION' 5 FOG_PAR.TXT ? # _struct.entry_id 3KTU _struct.title 'Structure of human 8-oxoGuanine Glycosylase 1 bound to fluorninated oxoG-containing DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KTU _struct_keywords.text ;8-oxoGuanine, 2'-fluoro-8-oxoGuanine, protein-DNA complex, DNA glycosylase, Base Excsion Repair, DNA damage, DNA repair, HYDROLASE, LYASE-DNA complex ; _struct_keywords.pdbx_keywords HYDROLASE,LYASE/DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 5 ? G N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 11 ? TRP A 15 ? THR A 19 TRP A 23 5 ? 5 HELX_P HELX_P2 2 ARG A 26 ? LEU A 31 ? ARG A 34 LEU A 39 1 ? 6 HELX_P HELX_P3 3 THR A 81 ? PHE A 92 ? THR A 89 PHE A 100 1 ? 12 HELX_P HELX_P4 4 THR A 97 ? ASP A 109 ? THR A 105 ASP A 117 1 ? 13 HELX_P HELX_P5 6 ASP A 128 ? CYS A 138 ? ASP A 136 CYS A 146 1 ? 11 HELX_P HELX_P6 7 ASN A 143 ? GLY A 159 ? ASN A 151 GLY A 167 1 ? 17 HELX_P HELX_P7 8 SER A 175 ? ALA A 180 ? SER A 183 ALA A 188 1 ? 6 HELX_P HELX_P8 9 GLU A 183 ? LEU A 191 ? GLU A 191 LEU A 199 1 ? 9 HELX_P HELX_P9 10 TYR A 195 ? GLU A 210 ? TYR A 203 GLU A 218 1 ? 16 HELX_P HELX_P10 11 GLY A 213 ? GLN A 219 ? GLY A 221 GLN A 227 1 ? 7 HELX_P HELX_P11 12 LEU A 220 ? SER A 223 ? LEU A 228 SER A 231 5 ? 4 HELX_P HELX_P12 13 SER A 224 ? CYS A 233 ? SER A 232 CYS A 241 1 ? 10 HELX_P HELX_P13 14 GLY A 239 ? LEU A 251 ? GLY A 247 LEU A 259 1 ? 13 HELX_P HELX_P14 15 ASP A 260 ? SER A 272 ? ASP A 268 SER A 280 1 ? 13 HELX_P HELX_P15 16 SER A 284 ? GLY A 300 ? SER A 292 GLY A 308 1 ? 17 HELX_P HELX_P16 17 TYR A 302 ? ARG A 316 ? TYR A 310 ARG A 324 1 ? 15 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? C DA 5 "O3'" ? ? ? 1_555 C FDG 6 P ? ? C DA 22 C FDG 23 1_555 ? ? ? ? ? ? ? 1.626 ? ? covale2 covale both ? C FDG 6 "O3'" ? ? ? 1_555 C DG 7 P ? ? C FDG 23 C DG 24 1_555 ? ? ? ? ? ? ? 1.615 ? ? metalc1 metalc ? ? D CA . CA ? ? ? 1_555 A CYS 233 O ? ? A CA 2 A CYS 241 1_555 ? ? ? ? ? ? ? 2.580 ? ? metalc2 metalc ? ? D CA . CA ? ? ? 1_555 A LEU 235 O ? ? A CA 2 A LEU 243 1_555 ? ? ? ? ? ? ? 2.830 ? ? metalc3 metalc ? ? D CA . CA ? ? ? 1_555 A VAL 238 O ? ? A CA 2 A VAL 246 1_555 ? ? ? ? ? ? ? 2.839 ? ? metalc4 metalc ? ? D CA . CA ? ? ? 1_555 C DC 9 OP1 ? ? A CA 2 C DC 26 1_555 ? ? ? ? ? ? ? 2.644 ? ? metalc5 metalc ? ? E CA . CA ? ? ? 1_555 C DG 7 OP1 ? ? C CA 1 C DG 24 1_555 ? ? ? ? ? ? ? 2.907 ? ? hydrog1 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 12 O2 ? ? B DG 2 C DC 29 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog2 hydrog ? ? B DT 3 N3 ? ? ? 1_555 C DA 11 N1 ? ? B DT 3 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DT 3 O4 ? ? ? 1_555 C DA 11 N6 ? ? B DT 3 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 10 N3 ? ? B DA 4 C DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 10 O4 ? ? B DA 4 C DT 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 5 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 5 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 5 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 5 C DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 6 N1 ? ? ? 1_555 C DT 8 N3 ? ? B DA 6 C DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 6 N6 ? ? ? 1_555 C DT 8 O4 ? ? B DA 6 C DT 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 7 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 7 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 7 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DT 9 N3 ? ? ? 1_555 C DA 5 N1 ? ? B DT 9 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 5 N6 ? ? B DT 9 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 10 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 10 C DC 21 1_555 ? ? ? ? ? ? 'DG-DC PAIR' ? ? ? hydrog17 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 3 N3 ? ? B DG 11 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 3 O2 ? ? B DG 11 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 3 N4 ? ? B DG 11 C DC 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 12 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 12 C DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 12 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 12 C DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 13 N3 ? ? ? 1_555 C DG 1 N2 ? ? B DC 13 C DG 18 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 16 ? PRO A 19 ? ALA A 24 PRO A 27 A 2 GLN A 64 ? TYR A 70 ? GLN A 72 TYR A 78 A 3 GLN A 54 ? GLN A 60 ? GLN A 62 GLN A 68 A 4 HIS A 46 ? LEU A 51 ? HIS A 54 LEU A 59 A 5 ARG A 40 ? SER A 43 ? ARG A 48 SER A 51 B 1 ARG A 161 ? LEU A 165 ? ARG A 169 LEU A 173 B 2 VAL A 168 ? HIS A 171 ? VAL A 176 HIS A 179 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 16 ? N ALA A 24 O CYS A 67 ? O CYS A 75 A 2 3 O HIS A 66 ? O HIS A 74 N THR A 59 ? N THR A 67 A 3 4 O GLN A 54 ? O GLN A 62 N LEU A 51 ? N LEU A 59 A 4 5 O SER A 48 ? O SER A 56 N ARG A 40 ? N ARG A 48 B 1 2 N LEU A 162 ? N LEU A 170 O TYR A 170 ? O TYR A 178 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C FDG 23 ? 15 'BINDING SITE FOR RESIDUE FDG C 23' AC2 Software A CA 2 ? 4 'BINDING SITE FOR RESIDUE CA A 2' AC3 Software C CA 1 ? 2 'BINDING SITE FOR RESIDUE CA C 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 GLY A 34 ? GLY A 42 . ? 1_555 ? 2 AC1 15 SER A 139 ? SER A 147 . ? 1_555 ? 3 AC1 15 ASN A 142 ? ASN A 150 . ? 1_555 ? 4 AC1 15 ASN A 143 ? ASN A 151 . ? 1_555 ? 5 AC1 15 ILE A 144 ? ILE A 152 . ? 1_555 ? 6 AC1 15 LYS A 241 ? LYS A 249 . ? 1_555 ? 7 AC1 15 MET A 249 ? MET A 257 . ? 1_555 ? 8 AC1 15 PRO A 258 ? PRO A 266 . ? 1_555 ? 9 AC1 15 ASP A 260 ? ASP A 268 . ? 1_555 ? 10 AC1 15 HIS A 262 ? HIS A 270 . ? 1_555 ? 11 AC1 15 GLN A 307 ? GLN A 315 . ? 1_555 ? 12 AC1 15 PHE A 311 ? PHE A 319 . ? 1_555 ? 13 AC1 15 DA C 5 ? DA C 22 . ? 1_555 ? 14 AC1 15 DG C 7 ? DG C 24 . ? 1_555 ? 15 AC1 15 HOH G . ? HOH C 109 . ? 1_555 ? 16 AC2 4 CYS A 233 ? CYS A 241 . ? 1_555 ? 17 AC2 4 LEU A 235 ? LEU A 243 . ? 1_555 ? 18 AC2 4 VAL A 238 ? VAL A 246 . ? 1_555 ? 19 AC2 4 DC C 9 ? DC C 26 . ? 1_555 ? 20 AC3 2 VAL A 261 ? VAL A 269 . ? 1_555 ? 21 AC3 2 DG C 7 ? DG C 24 . ? 1_555 ? # _atom_sites.entry_id 3KTU _atom_sites.fract_transf_matrix[1][1] 0.010823 _atom_sites.fract_transf_matrix[1][2] 0.006248 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012497 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004706 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA F N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 9 9 SER SER A . n A 1 2 GLU 2 10 10 GLU GLU A . n A 1 3 PHE 3 11 11 PHE PHE A . n A 1 4 GLY 4 12 12 GLY GLY A . n A 1 5 HIS 5 13 13 HIS HIS A . n A 1 6 ARG 6 14 14 ARG ARG A . n A 1 7 THR 7 15 15 THR THR A . n A 1 8 LEU 8 16 16 LEU LEU A . n A 1 9 ALA 9 17 17 ALA ALA A . n A 1 10 SER 10 18 18 SER SER A . n A 1 11 THR 11 19 19 THR THR A . n A 1 12 PRO 12 20 20 PRO PRO A . n A 1 13 ALA 13 21 21 ALA ALA A . n A 1 14 LEU 14 22 22 LEU LEU A . n A 1 15 TRP 15 23 23 TRP TRP A . n A 1 16 ALA 16 24 24 ALA ALA A . n A 1 17 SER 17 25 25 SER SER A . n A 1 18 ILE 18 26 26 ILE ILE A . n A 1 19 PRO 19 27 27 PRO PRO A . n A 1 20 CYS 20 28 28 CYS CYS A . n A 1 21 PRO 21 29 29 PRO PRO A . n A 1 22 ARG 22 30 30 ARG ARG A . n A 1 23 SER 23 31 31 SER SER A . n A 1 24 GLU 24 32 32 GLU GLU A . n A 1 25 LEU 25 33 33 LEU LEU A . n A 1 26 ARG 26 34 34 ARG ARG A . n A 1 27 LEU 27 35 35 LEU LEU A . n A 1 28 ASP 28 36 36 ASP ASP A . n A 1 29 LEU 29 37 37 LEU LEU A . n A 1 30 VAL 30 38 38 VAL VAL A . n A 1 31 LEU 31 39 39 LEU LEU A . n A 1 32 PRO 32 40 40 PRO PRO A . n A 1 33 SER 33 41 41 SER SER A . n A 1 34 GLY 34 42 42 GLY GLY A . n A 1 35 GLN 35 43 43 GLN GLN A . n A 1 36 SER 36 44 44 SER SER A . n A 1 37 PHE 37 45 45 PHE PHE A . n A 1 38 ARG 38 46 46 ARG ARG A . n A 1 39 TRP 39 47 47 TRP TRP A . n A 1 40 ARG 40 48 48 ARG ARG A . n A 1 41 GLU 41 49 49 GLU GLU A . n A 1 42 GLN 42 50 50 GLN GLN A . n A 1 43 SER 43 51 51 SER SER A . n A 1 44 PRO 44 52 52 PRO PRO A . n A 1 45 ALA 45 53 53 ALA ALA A . n A 1 46 HIS 46 54 54 HIS HIS A . n A 1 47 TRP 47 55 55 TRP TRP A . n A 1 48 SER 48 56 56 SER SER A . n A 1 49 GLY 49 57 57 GLY GLY A . n A 1 50 VAL 50 58 58 VAL VAL A . n A 1 51 LEU 51 59 59 LEU LEU A . n A 1 52 ALA 52 60 60 ALA ALA A . n A 1 53 ASP 53 61 61 ASP ASP A . n A 1 54 GLN 54 62 62 GLN GLN A . n A 1 55 VAL 55 63 63 VAL VAL A . n A 1 56 TRP 56 64 64 TRP TRP A . n A 1 57 THR 57 65 65 THR THR A . n A 1 58 LEU 58 66 66 LEU LEU A . n A 1 59 THR 59 67 67 THR THR A . n A 1 60 GLN 60 68 68 GLN GLN A . n A 1 61 THR 61 69 69 THR THR A . n A 1 62 GLU 62 70 70 GLU GLU A . n A 1 63 GLU 63 71 71 GLU GLU A . n A 1 64 GLN 64 72 72 GLN GLN A . n A 1 65 LEU 65 73 73 LEU LEU A . n A 1 66 HIS 66 74 74 HIS HIS A . n A 1 67 CYS 67 75 75 CYS CYS A . n A 1 68 THR 68 76 76 THR THR A . n A 1 69 VAL 69 77 77 VAL VAL A . n A 1 70 TYR 70 78 78 TYR TYR A . n A 1 71 ARG 71 79 79 ARG ARG A . n A 1 72 GLY 72 80 ? ? ? A . n A 1 73 ASP 73 81 ? ? ? A . n A 1 74 LYS 74 82 ? ? ? A . n A 1 75 SER 75 83 83 SER SER A . n A 1 76 GLN 76 84 84 GLN GLN A . n A 1 77 ALA 77 85 85 ALA ALA A . n A 1 78 SER 78 86 86 SER SER A . n A 1 79 ARG 79 87 87 ARG ARG A . n A 1 80 PRO 80 88 88 PRO PRO A . n A 1 81 THR 81 89 89 THR THR A . n A 1 82 PRO 82 90 90 PRO PRO A . n A 1 83 ASP 83 91 91 ASP ASP A . n A 1 84 GLU 84 92 92 GLU GLU A . n A 1 85 LEU 85 93 93 LEU LEU A . n A 1 86 GLU 86 94 94 GLU GLU A . n A 1 87 ALA 87 95 95 ALA ALA A . n A 1 88 VAL 88 96 96 VAL VAL A . n A 1 89 ARG 89 97 97 ARG ARG A . n A 1 90 LYS 90 98 98 LYS LYS A . n A 1 91 TYR 91 99 99 TYR TYR A . n A 1 92 PHE 92 100 100 PHE PHE A . n A 1 93 GLN 93 101 101 GLN GLN A . n A 1 94 LEU 94 102 102 LEU LEU A . n A 1 95 ASP 95 103 103 ASP ASP A . n A 1 96 VAL 96 104 104 VAL VAL A . n A 1 97 THR 97 105 105 THR THR A . n A 1 98 LEU 98 106 106 LEU LEU A . n A 1 99 ALA 99 107 107 ALA ALA A . n A 1 100 GLN 100 108 108 GLN GLN A . n A 1 101 LEU 101 109 109 LEU LEU A . n A 1 102 TYR 102 110 110 TYR TYR A . n A 1 103 HIS 103 111 111 HIS HIS A . n A 1 104 HIS 104 112 112 HIS HIS A . n A 1 105 TRP 105 113 113 TRP TRP A . n A 1 106 GLY 106 114 114 GLY GLY A . n A 1 107 SER 107 115 115 SER SER A . n A 1 108 VAL 108 116 116 VAL VAL A . n A 1 109 ASP 109 117 117 ASP ASP A . n A 1 110 SER 110 118 118 SER SER A . n A 1 111 HIS 111 119 119 HIS HIS A . n A 1 112 PHE 112 120 120 PHE PHE A . n A 1 113 GLN 113 121 121 GLN GLN A . n A 1 114 GLU 114 122 122 GLU GLU A . n A 1 115 VAL 115 123 123 VAL VAL A . n A 1 116 ALA 116 124 124 ALA ALA A . n A 1 117 GLN 117 125 125 GLN GLN A . n A 1 118 LYS 118 126 126 LYS LYS A . n A 1 119 PHE 119 127 127 PHE PHE A . n A 1 120 GLN 120 128 128 GLN GLN A . n A 1 121 GLY 121 129 129 GLY GLY A . n A 1 122 VAL 122 130 130 VAL VAL A . n A 1 123 ARG 123 131 131 ARG ARG A . n A 1 124 LEU 124 132 132 LEU LEU A . n A 1 125 LEU 125 133 133 LEU LEU A . n A 1 126 ARG 126 134 134 ARG ARG A . n A 1 127 GLN 127 135 135 GLN GLN A . n A 1 128 ASP 128 136 136 ASP ASP A . n A 1 129 PRO 129 137 137 PRO PRO A . n A 1 130 ILE 130 138 138 ILE ILE A . n A 1 131 GLU 131 139 139 GLU GLU A . n A 1 132 CYS 132 140 140 CYS CYS A . n A 1 133 LEU 133 141 141 LEU LEU A . n A 1 134 PHE 134 142 142 PHE PHE A . n A 1 135 SER 135 143 143 SER SER A . n A 1 136 PHE 136 144 144 PHE PHE A . n A 1 137 ILE 137 145 145 ILE ILE A . n A 1 138 CYS 138 146 146 CYS CYS A . n A 1 139 SER 139 147 147 SER SER A . n A 1 140 SER 140 148 148 SER SER A . n A 1 141 CYS 141 149 149 CYS CYS A . n A 1 142 ASN 142 150 150 ASN ASN A . n A 1 143 ASN 143 151 151 ASN ASN A . n A 1 144 ILE 144 152 152 ILE ILE A . n A 1 145 ALA 145 153 153 ALA ALA A . n A 1 146 ARG 146 154 154 ARG ARG A . n A 1 147 ILE 147 155 155 ILE ILE A . n A 1 148 THR 148 156 156 THR THR A . n A 1 149 GLY 149 157 157 GLY GLY A . n A 1 150 MET 150 158 158 MET MET A . n A 1 151 VAL 151 159 159 VAL VAL A . n A 1 152 GLU 152 160 160 GLU GLU A . n A 1 153 ARG 153 161 161 ARG ARG A . n A 1 154 LEU 154 162 162 LEU LEU A . n A 1 155 CYS 155 163 163 CYS CYS A . n A 1 156 GLN 156 164 164 GLN GLN A . n A 1 157 ALA 157 165 165 ALA ALA A . n A 1 158 PHE 158 166 166 PHE PHE A . n A 1 159 GLY 159 167 167 GLY GLY A . n A 1 160 PRO 160 168 168 PRO PRO A . n A 1 161 ARG 161 169 169 ARG ARG A . n A 1 162 LEU 162 170 170 LEU LEU A . n A 1 163 ILE 163 171 171 ILE ILE A . n A 1 164 GLN 164 172 172 GLN GLN A . n A 1 165 LEU 165 173 173 LEU LEU A . n A 1 166 ASP 166 174 174 ASP ASP A . n A 1 167 ASP 167 175 175 ASP ASP A . n A 1 168 VAL 168 176 176 VAL VAL A . n A 1 169 THR 169 177 177 THR THR A . n A 1 170 TYR 170 178 178 TYR TYR A . n A 1 171 HIS 171 179 179 HIS HIS A . n A 1 172 GLY 172 180 180 GLY GLY A . n A 1 173 PHE 173 181 181 PHE PHE A . n A 1 174 PRO 174 182 182 PRO PRO A . n A 1 175 SER 175 183 183 SER SER A . n A 1 176 LEU 176 184 184 LEU LEU A . n A 1 177 GLN 177 185 185 GLN GLN A . n A 1 178 ALA 178 186 186 ALA ALA A . n A 1 179 LEU 179 187 187 LEU LEU A . n A 1 180 ALA 180 188 188 ALA ALA A . n A 1 181 GLY 181 189 189 GLY GLY A . n A 1 182 PRO 182 190 190 PRO PRO A . n A 1 183 GLU 183 191 191 GLU GLU A . n A 1 184 VAL 184 192 192 VAL VAL A . n A 1 185 GLU 185 193 193 GLU GLU A . n A 1 186 ALA 186 194 194 ALA ALA A . n A 1 187 HIS 187 195 195 HIS HIS A . n A 1 188 LEU 188 196 196 LEU LEU A . n A 1 189 ARG 189 197 197 ARG ARG A . n A 1 190 LYS 190 198 198 LYS LYS A . n A 1 191 LEU 191 199 199 LEU LEU A . n A 1 192 GLY 192 200 200 GLY GLY A . n A 1 193 LEU 193 201 201 LEU LEU A . n A 1 194 GLY 194 202 202 GLY GLY A . n A 1 195 TYR 195 203 203 TYR TYR A . n A 1 196 ARG 196 204 204 ARG ARG A . n A 1 197 ALA 197 205 205 ALA ALA A . n A 1 198 ARG 198 206 206 ARG ARG A . n A 1 199 TYR 199 207 207 TYR TYR A . n A 1 200 VAL 200 208 208 VAL VAL A . n A 1 201 SER 201 209 209 SER SER A . n A 1 202 ALA 202 210 210 ALA ALA A . n A 1 203 SER 203 211 211 SER SER A . n A 1 204 ALA 204 212 212 ALA ALA A . n A 1 205 ARG 205 213 213 ARG ARG A . n A 1 206 ALA 206 214 214 ALA ALA A . n A 1 207 ILE 207 215 215 ILE ILE A . n A 1 208 LEU 208 216 216 LEU LEU A . n A 1 209 GLU 209 217 217 GLU GLU A . n A 1 210 GLU 210 218 218 GLU GLU A . n A 1 211 GLN 211 219 219 GLN GLN A . n A 1 212 GLY 212 220 220 GLY GLY A . n A 1 213 GLY 213 221 221 GLY GLY A . n A 1 214 LEU 214 222 222 LEU LEU A . n A 1 215 ALA 215 223 223 ALA ALA A . n A 1 216 TRP 216 224 224 TRP TRP A . n A 1 217 LEU 217 225 225 LEU LEU A . n A 1 218 GLN 218 226 226 GLN GLN A . n A 1 219 GLN 219 227 227 GLN GLN A . n A 1 220 LEU 220 228 228 LEU LEU A . n A 1 221 ARG 221 229 229 ARG ARG A . n A 1 222 GLU 222 230 230 GLU GLU A . n A 1 223 SER 223 231 231 SER SER A . n A 1 224 SER 224 232 232 SER SER A . n A 1 225 TYR 225 233 233 TYR TYR A . n A 1 226 GLU 226 234 234 GLU GLU A . n A 1 227 GLU 227 235 235 GLU GLU A . n A 1 228 ALA 228 236 236 ALA ALA A . n A 1 229 HIS 229 237 237 HIS HIS A . n A 1 230 LYS 230 238 238 LYS LYS A . n A 1 231 ALA 231 239 239 ALA ALA A . n A 1 232 LEU 232 240 240 LEU LEU A . n A 1 233 CYS 233 241 241 CYS CYS A . n A 1 234 ILE 234 242 242 ILE ILE A . n A 1 235 LEU 235 243 243 LEU LEU A . n A 1 236 PRO 236 244 244 PRO PRO A . n A 1 237 GLY 237 245 245 GLY GLY A . n A 1 238 VAL 238 246 246 VAL VAL A . n A 1 239 GLY 239 247 247 GLY GLY A . n A 1 240 THR 240 248 248 THR THR A . n A 1 241 LYS 241 249 249 LYS LYS A . n A 1 242 VAL 242 250 250 VAL VAL A . n A 1 243 ALA 243 251 251 ALA ALA A . n A 1 244 ASP 244 252 252 ASP ASP A . n A 1 245 CYS 245 253 253 CYS CYS A . n A 1 246 ILE 246 254 254 ILE ILE A . n A 1 247 CYS 247 255 255 CYS CYS A . n A 1 248 LEU 248 256 256 LEU LEU A . n A 1 249 MET 249 257 257 MET MET A . n A 1 250 ALA 250 258 258 ALA ALA A . n A 1 251 LEU 251 259 259 LEU LEU A . n A 1 252 ASP 252 260 260 ASP ASP A . n A 1 253 LYS 253 261 261 LYS LYS A . n A 1 254 PRO 254 262 262 PRO PRO A . n A 1 255 GLN 255 263 263 GLN GLN A . n A 1 256 ALA 256 264 264 ALA ALA A . n A 1 257 VAL 257 265 265 VAL VAL A . n A 1 258 PRO 258 266 266 PRO PRO A . n A 1 259 VAL 259 267 267 VAL VAL A . n A 1 260 ASP 260 268 268 ASP ASP A . n A 1 261 VAL 261 269 269 VAL VAL A . n A 1 262 HIS 262 270 270 HIS HIS A . n A 1 263 MET 263 271 271 MET MET A . n A 1 264 TRP 264 272 272 TRP TRP A . n A 1 265 HIS 265 273 273 HIS HIS A . n A 1 266 ILE 266 274 274 ILE ILE A . n A 1 267 ALA 267 275 275 ALA ALA A . n A 1 268 GLN 268 276 276 GLN GLN A . n A 1 269 ARG 269 277 277 ARG ARG A . n A 1 270 ASP 270 278 278 ASP ASP A . n A 1 271 TYR 271 279 279 TYR TYR A . n A 1 272 SER 272 280 280 SER SER A . n A 1 273 TRP 273 281 281 TRP TRP A . n A 1 274 HIS 274 282 282 HIS HIS A . n A 1 275 PRO 275 283 283 PRO PRO A . n A 1 276 THR 276 284 284 THR THR A . n A 1 277 THR 277 285 285 THR THR A . n A 1 278 SER 278 286 286 SER SER A . n A 1 279 GLN 279 287 287 GLN GLN A . n A 1 280 ALA 280 288 288 ALA ALA A . n A 1 281 LYS 281 289 289 LYS LYS A . n A 1 282 GLY 282 290 290 GLY GLY A . n A 1 283 PRO 283 291 291 PRO PRO A . n A 1 284 SER 284 292 292 SER SER A . n A 1 285 PRO 285 293 293 PRO PRO A . n A 1 286 GLN 286 294 294 GLN GLN A . n A 1 287 THR 287 295 295 THR THR A . n A 1 288 ASN 288 296 296 ASN ASN A . n A 1 289 LYS 289 297 297 LYS LYS A . n A 1 290 GLU 290 298 298 GLU GLU A . n A 1 291 LEU 291 299 299 LEU LEU A . n A 1 292 GLY 292 300 300 GLY GLY A . n A 1 293 ASN 293 301 301 ASN ASN A . n A 1 294 PHE 294 302 302 PHE PHE A . n A 1 295 PHE 295 303 303 PHE PHE A . n A 1 296 ARG 296 304 304 ARG ARG A . n A 1 297 SER 297 305 305 SER SER A . n A 1 298 LEU 298 306 306 LEU LEU A . n A 1 299 TRP 299 307 307 TRP TRP A . n A 1 300 GLY 300 308 308 GLY GLY A . n A 1 301 PRO 301 309 309 PRO PRO A . n A 1 302 TYR 302 310 310 TYR TYR A . n A 1 303 ALA 303 311 311 ALA ALA A . n A 1 304 GLY 304 312 312 GLY GLY A . n A 1 305 TRP 305 313 313 TRP TRP A . n A 1 306 ALA 306 314 314 ALA ALA A . n A 1 307 GLN 307 315 315 GLN GLN A . n A 1 308 ALA 308 316 316 ALA ALA A . n A 1 309 VAL 309 317 317 VAL VAL A . n A 1 310 LEU 310 318 318 LEU LEU A . n A 1 311 PHE 311 319 319 PHE PHE A . n A 1 312 SER 312 320 320 SER SER A . n A 1 313 ALA 313 321 321 ALA ALA A . n A 1 314 ASP 314 322 322 ASP ASP A . n A 1 315 LEU 315 323 323 LEU LEU A . n A 1 316 ARG 316 324 324 ARG ARG A . n A 1 317 GLN 317 325 325 GLN GLN A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DG 2 2 2 DG DG B . n B 2 3 DT 3 3 3 DT DT B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DG 5 5 5 DG DG B . n B 2 6 DA 6 6 6 DA DA B . n B 2 7 DC 7 7 7 DC DC B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DG 10 10 10 DG DG B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DA 12 12 12 DA DA B . n B 2 13 DC 13 13 13 DC DC B . n C 3 1 DG 1 18 18 DG DG C . n C 3 2 DT 2 19 19 DT DT C . n C 3 3 DC 3 20 20 DC DC C . n C 3 4 DC 4 21 21 DC DC C . n C 3 5 DA 5 22 22 DA DA C . n C 3 6 FDG 6 23 23 FDG FDG C . n C 3 7 DG 7 24 24 DG DG C . n C 3 8 DT 8 25 25 DT DT C . n C 3 9 DC 9 26 26 DC DC C . n C 3 10 DT 10 27 27 DT DT C . n C 3 11 DA 11 28 28 DA DA C . n C 3 12 DC 12 29 29 DC DC C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA 1 2 2 CA CA A . E 4 CA 1 1 1 CA CA C . F 5 HOH 1 1 1 HOH HOH A . F 5 HOH 2 3 3 HOH HOH A . F 5 HOH 3 4 4 HOH HOH A . F 5 HOH 4 5 5 HOH HOH A . F 5 HOH 5 6 6 HOH HOH A . F 5 HOH 6 7 7 HOH HOH A . F 5 HOH 7 326 326 HOH HOH A . F 5 HOH 8 327 327 HOH HOH A . F 5 HOH 9 328 328 HOH HOH A . F 5 HOH 10 329 329 HOH HOH A . F 5 HOH 11 330 330 HOH HOH A . F 5 HOH 12 331 331 HOH HOH A . F 5 HOH 13 332 332 HOH HOH A . F 5 HOH 14 333 333 HOH HOH A . F 5 HOH 15 334 334 HOH HOH A . F 5 HOH 16 335 335 HOH HOH A . F 5 HOH 17 336 336 HOH HOH A . F 5 HOH 18 337 337 HOH HOH A . F 5 HOH 19 338 338 HOH HOH A . F 5 HOH 20 339 339 HOH HOH A . F 5 HOH 21 340 340 HOH HOH A . F 5 HOH 22 341 341 HOH HOH A . F 5 HOH 23 342 342 HOH HOH A . F 5 HOH 24 343 343 HOH HOH A . F 5 HOH 25 344 344 HOH HOH A . F 5 HOH 26 345 345 HOH HOH A . F 5 HOH 27 346 346 HOH HOH A . F 5 HOH 28 347 347 HOH HOH A . F 5 HOH 29 348 348 HOH HOH A . F 5 HOH 30 349 349 HOH HOH A . F 5 HOH 31 350 350 HOH HOH A . F 5 HOH 32 351 351 HOH HOH A . F 5 HOH 33 352 352 HOH HOH A . F 5 HOH 34 353 353 HOH HOH A . F 5 HOH 35 354 354 HOH HOH A . F 5 HOH 36 355 355 HOH HOH A . F 5 HOH 37 356 356 HOH HOH A . F 5 HOH 38 357 357 HOH HOH A . F 5 HOH 39 358 358 HOH HOH A . F 5 HOH 40 359 359 HOH HOH A . F 5 HOH 41 360 360 HOH HOH A . F 5 HOH 42 361 361 HOH HOH A . F 5 HOH 43 362 362 HOH HOH A . F 5 HOH 44 363 363 HOH HOH A . F 5 HOH 45 364 364 HOH HOH A . F 5 HOH 46 365 365 HOH HOH A . F 5 HOH 47 366 366 HOH HOH A . F 5 HOH 48 367 367 HOH HOH A . F 5 HOH 49 368 368 HOH HOH A . F 5 HOH 50 369 369 HOH HOH A . F 5 HOH 51 370 370 HOH HOH A . F 5 HOH 52 371 371 HOH HOH A . F 5 HOH 53 372 372 HOH HOH A . F 5 HOH 54 373 373 HOH HOH A . F 5 HOH 55 374 374 HOH HOH A . F 5 HOH 56 375 375 HOH HOH A . F 5 HOH 57 376 376 HOH HOH A . F 5 HOH 58 377 377 HOH HOH A . F 5 HOH 59 378 378 HOH HOH A . F 5 HOH 60 379 379 HOH HOH A . F 5 HOH 61 380 380 HOH HOH A . F 5 HOH 62 381 381 HOH HOH A . F 5 HOH 63 382 382 HOH HOH A . F 5 HOH 64 383 383 HOH HOH A . F 5 HOH 65 384 384 HOH HOH A . F 5 HOH 66 385 385 HOH HOH A . F 5 HOH 67 386 386 HOH HOH A . F 5 HOH 68 387 387 HOH HOH A . F 5 HOH 69 388 388 HOH HOH A . F 5 HOH 70 389 389 HOH HOH A . G 5 HOH 1 55 55 HOH HOH C . G 5 HOH 2 109 109 HOH HOH C . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id C _pdbx_struct_mod_residue.label_comp_id FDG _pdbx_struct_mod_residue.label_seq_id 6 _pdbx_struct_mod_residue.auth_asym_id C _pdbx_struct_mod_residue.auth_comp_id FDG _pdbx_struct_mod_residue.auth_seq_id 23 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3950 ? 1 MORE -44 ? 1 'SSA (A^2)' 17130 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A CYS 233 ? A CYS 241 ? 1_555 CA ? D CA . ? A CA 2 ? 1_555 O ? A LEU 235 ? A LEU 243 ? 1_555 95.8 ? 2 O ? A CYS 233 ? A CYS 241 ? 1_555 CA ? D CA . ? A CA 2 ? 1_555 O ? A VAL 238 ? A VAL 246 ? 1_555 88.8 ? 3 O ? A LEU 235 ? A LEU 243 ? 1_555 CA ? D CA . ? A CA 2 ? 1_555 O ? A VAL 238 ? A VAL 246 ? 1_555 82.4 ? 4 O ? A CYS 233 ? A CYS 241 ? 1_555 CA ? D CA . ? A CA 2 ? 1_555 OP1 ? C DC 9 ? C DC 26 ? 1_555 173.7 ? 5 O ? A LEU 235 ? A LEU 243 ? 1_555 CA ? D CA . ? A CA 2 ? 1_555 OP1 ? C DC 9 ? C DC 26 ? 1_555 77.9 ? 6 O ? A VAL 238 ? A VAL 246 ? 1_555 CA ? D CA . ? A CA 2 ? 1_555 OP1 ? C DC 9 ? C DC 26 ? 1_555 91.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2021-10-13 5 'Structure model' 1 4 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Refinement description' 3 3 'Structure model' 'Source and taxonomy' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_entity_src_syn 2 3 'Structure model' software 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' chem_comp_atom 9 5 'Structure model' chem_comp_bond 10 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_entity_src_syn.ncbi_taxonomy_id' 2 3 'Structure model' '_pdbx_entity_src_syn.organism_scientific' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.value' 20 4 'Structure model' '_struct_conn.pdbx_dist_value' 21 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 22 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 36 4 'Structure model' '_struct_ref_seq_dif.details' 37 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 38 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 39 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction' http://www.hkl-xray.com/ ? ? 2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 3 CNS . ? package 'Axel T. Brunger' axel.brunger@yale.edu refinement http://cns-online.org/ Fortran_77 ? 4 PDB_EXTRACT 3.005 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 CNS . ? ? ? ? phasing ? ? ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 GLY _pdbx_validate_rmsd_angle.auth_seq_id_1 308 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 309 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 309 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 128.59 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 9.29 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 CYS A 28 ? ? -171.46 108.96 2 1 CYS A 149 ? ? 33.38 53.56 3 1 LEU A 170 ? ? -103.56 -144.30 4 1 ASP A 174 ? ? 55.05 -131.57 5 1 GLU A 218 ? ? -143.68 -31.99 6 1 ALA A 258 ? ? -140.42 -10.79 7 1 THR A 284 ? ? -105.74 -70.10 8 1 ALA A 288 ? ? -45.96 151.73 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 125 ? CG ? A GLN 117 CG 2 1 Y 1 A GLN 125 ? CD ? A GLN 117 CD 3 1 Y 1 A GLN 125 ? OE1 ? A GLN 117 OE1 4 1 Y 1 A GLN 125 ? NE2 ? A GLN 117 NE2 5 1 Y 1 A LYS 126 ? CG ? A LYS 118 CG 6 1 Y 1 A LYS 126 ? CD ? A LYS 118 CD 7 1 Y 1 A LYS 126 ? CE ? A LYS 118 CE 8 1 Y 1 A LYS 126 ? NZ ? A LYS 118 NZ 9 1 Y 1 A GLN 325 ? CG ? A GLN 317 CG 10 1 Y 1 A GLN 325 ? CD ? A GLN 317 CD 11 1 Y 1 A GLN 325 ? OE1 ? A GLN 317 OE1 12 1 Y 1 A GLN 325 ? NE2 ? A GLN 317 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 80 ? A GLY 72 2 1 Y 1 A ASP 81 ? A ASP 73 3 1 Y 1 A LYS 82 ? A LYS 74 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CA CA CA N N 74 CYS N N N N 75 CYS CA C N R 76 CYS C C N N 77 CYS O O N N 78 CYS CB C N N 79 CYS SG S N N 80 CYS OXT O N N 81 CYS H H N N 82 CYS H2 H N N 83 CYS HA H N N 84 CYS HB2 H N N 85 CYS HB3 H N N 86 CYS HG H N N 87 CYS HXT H N N 88 DA OP3 O N N 89 DA P P N N 90 DA OP1 O N N 91 DA OP2 O N N 92 DA "O5'" O N N 93 DA "C5'" C N N 94 DA "C4'" C N R 95 DA "O4'" O N N 96 DA "C3'" C N S 97 DA "O3'" O N N 98 DA "C2'" C N N 99 DA "C1'" C N R 100 DA N9 N Y N 101 DA C8 C Y N 102 DA N7 N Y N 103 DA C5 C Y N 104 DA C6 C Y N 105 DA N6 N N N 106 DA N1 N Y N 107 DA C2 C Y N 108 DA N3 N Y N 109 DA C4 C Y N 110 DA HOP3 H N N 111 DA HOP2 H N N 112 DA "H5'" H N N 113 DA "H5''" H N N 114 DA "H4'" H N N 115 DA "H3'" H N N 116 DA "HO3'" H N N 117 DA "H2'" H N N 118 DA "H2''" H N N 119 DA "H1'" H N N 120 DA H8 H N N 121 DA H61 H N N 122 DA H62 H N N 123 DA H2 H N N 124 DC OP3 O N N 125 DC P P N N 126 DC OP1 O N N 127 DC OP2 O N N 128 DC "O5'" O N N 129 DC "C5'" C N N 130 DC "C4'" C N R 131 DC "O4'" O N N 132 DC "C3'" C N S 133 DC "O3'" O N N 134 DC "C2'" C N N 135 DC "C1'" C N R 136 DC N1 N N N 137 DC C2 C N N 138 DC O2 O N N 139 DC N3 N N N 140 DC C4 C N N 141 DC N4 N N N 142 DC C5 C N N 143 DC C6 C N N 144 DC HOP3 H N N 145 DC HOP2 H N N 146 DC "H5'" H N N 147 DC "H5''" H N N 148 DC "H4'" H N N 149 DC "H3'" H N N 150 DC "HO3'" H N N 151 DC "H2'" H N N 152 DC "H2''" H N N 153 DC "H1'" H N N 154 DC H41 H N N 155 DC H42 H N N 156 DC H5 H N N 157 DC H6 H N N 158 DG OP3 O N N 159 DG P P N N 160 DG OP1 O N N 161 DG OP2 O N N 162 DG "O5'" O N N 163 DG "C5'" C N N 164 DG "C4'" C N R 165 DG "O4'" O N N 166 DG "C3'" C N S 167 DG "O3'" O N N 168 DG "C2'" C N N 169 DG "C1'" C N R 170 DG N9 N Y N 171 DG C8 C Y N 172 DG N7 N Y N 173 DG C5 C Y N 174 DG C6 C N N 175 DG O6 O N N 176 DG N1 N N N 177 DG C2 C N N 178 DG N2 N N N 179 DG N3 N N N 180 DG C4 C Y N 181 DG HOP3 H N N 182 DG HOP2 H N N 183 DG "H5'" H N N 184 DG "H5''" H N N 185 DG "H4'" H N N 186 DG "H3'" H N N 187 DG "HO3'" H N N 188 DG "H2'" H N N 189 DG "H2''" H N N 190 DG "H1'" H N N 191 DG H8 H N N 192 DG H1 H N N 193 DG H21 H N N 194 DG H22 H N N 195 DT OP3 O N N 196 DT P P N N 197 DT OP1 O N N 198 DT OP2 O N N 199 DT "O5'" O N N 200 DT "C5'" C N N 201 DT "C4'" C N R 202 DT "O4'" O N N 203 DT "C3'" C N S 204 DT "O3'" O N N 205 DT "C2'" C N N 206 DT "C1'" C N R 207 DT N1 N N N 208 DT C2 C N N 209 DT O2 O N N 210 DT N3 N N N 211 DT C4 C N N 212 DT O4 O N N 213 DT C5 C N N 214 DT C7 C N N 215 DT C6 C N N 216 DT HOP3 H N N 217 DT HOP2 H N N 218 DT "H5'" H N N 219 DT "H5''" H N N 220 DT "H4'" H N N 221 DT "H3'" H N N 222 DT "HO3'" H N N 223 DT "H2'" H N N 224 DT "H2''" H N N 225 DT "H1'" H N N 226 DT H3 H N N 227 DT H71 H N N 228 DT H72 H N N 229 DT H73 H N N 230 DT H6 H N N 231 FDG P P N N 232 FDG N1 N N N 233 FDG C2 C N N 234 FDG N2 N N N 235 FDG N3 N N N 236 FDG C4 C N N 237 FDG C5 C N N 238 FDG C6 C N N 239 FDG O6 O N N 240 FDG N7 N N N 241 FDG C8 C N N 242 FDG O8 O N N 243 FDG N9 N N N 244 FDG "C1'" C N R 245 FDG "C2'" C N S 246 FDG "F2'" F N N 247 FDG "C3'" C N R 248 FDG "O3'" O N N 249 FDG "C4'" C N R 250 FDG "O4'" O N N 251 FDG "C5'" C N N 252 FDG "O5'" O N N 253 FDG OP1 O N N 254 FDG OP3 O N N 255 FDG HN1 H N N 256 FDG HN2 H N N 257 FDG HN2A H N N 258 FDG HN7 H N N 259 FDG "H1'" H N N 260 FDG "H2'" H N N 261 FDG "H3'" H N N 262 FDG "HO3'" H N N 263 FDG "H4'" H N N 264 FDG "H5'" H N N 265 FDG "H5'A" H N N 266 FDG OP2 O N N 267 FDG HOP3 H N N 268 FDG HOP2 H N N 269 GLN N N N N 270 GLN CA C N S 271 GLN C C N N 272 GLN O O N N 273 GLN CB C N N 274 GLN CG C N N 275 GLN CD C N N 276 GLN OE1 O N N 277 GLN NE2 N N N 278 GLN OXT O N N 279 GLN H H N N 280 GLN H2 H N N 281 GLN HA H N N 282 GLN HB2 H N N 283 GLN HB3 H N N 284 GLN HG2 H N N 285 GLN HG3 H N N 286 GLN HE21 H N N 287 GLN HE22 H N N 288 GLN HXT H N N 289 GLU N N N N 290 GLU CA C N S 291 GLU C C N N 292 GLU O O N N 293 GLU CB C N N 294 GLU CG C N N 295 GLU CD C N N 296 GLU OE1 O N N 297 GLU OE2 O N N 298 GLU OXT O N N 299 GLU H H N N 300 GLU H2 H N N 301 GLU HA H N N 302 GLU HB2 H N N 303 GLU HB3 H N N 304 GLU HG2 H N N 305 GLU HG3 H N N 306 GLU HE2 H N N 307 GLU HXT H N N 308 GLY N N N N 309 GLY CA C N N 310 GLY C C N N 311 GLY O O N N 312 GLY OXT O N N 313 GLY H H N N 314 GLY H2 H N N 315 GLY HA2 H N N 316 GLY HA3 H N N 317 GLY HXT H N N 318 HIS N N N N 319 HIS CA C N S 320 HIS C C N N 321 HIS O O N N 322 HIS CB C N N 323 HIS CG C Y N 324 HIS ND1 N Y N 325 HIS CD2 C Y N 326 HIS CE1 C Y N 327 HIS NE2 N Y N 328 HIS OXT O N N 329 HIS H H N N 330 HIS H2 H N N 331 HIS HA H N N 332 HIS HB2 H N N 333 HIS HB3 H N N 334 HIS HD1 H N N 335 HIS HD2 H N N 336 HIS HE1 H N N 337 HIS HE2 H N N 338 HIS HXT H N N 339 HOH O O N N 340 HOH H1 H N N 341 HOH H2 H N N 342 ILE N N N N 343 ILE CA C N S 344 ILE C C N N 345 ILE O O N N 346 ILE CB C N S 347 ILE CG1 C N N 348 ILE CG2 C N N 349 ILE CD1 C N N 350 ILE OXT O N N 351 ILE H H N N 352 ILE H2 H N N 353 ILE HA H N N 354 ILE HB H N N 355 ILE HG12 H N N 356 ILE HG13 H N N 357 ILE HG21 H N N 358 ILE HG22 H N N 359 ILE HG23 H N N 360 ILE HD11 H N N 361 ILE HD12 H N N 362 ILE HD13 H N N 363 ILE HXT H N N 364 LEU N N N N 365 LEU CA C N S 366 LEU C C N N 367 LEU O O N N 368 LEU CB C N N 369 LEU CG C N N 370 LEU CD1 C N N 371 LEU CD2 C N N 372 LEU OXT O N N 373 LEU H H N N 374 LEU H2 H N N 375 LEU HA H N N 376 LEU HB2 H N N 377 LEU HB3 H N N 378 LEU HG H N N 379 LEU HD11 H N N 380 LEU HD12 H N N 381 LEU HD13 H N N 382 LEU HD21 H N N 383 LEU HD22 H N N 384 LEU HD23 H N N 385 LEU HXT H N N 386 LYS N N N N 387 LYS CA C N S 388 LYS C C N N 389 LYS O O N N 390 LYS CB C N N 391 LYS CG C N N 392 LYS CD C N N 393 LYS CE C N N 394 LYS NZ N N N 395 LYS OXT O N N 396 LYS H H N N 397 LYS H2 H N N 398 LYS HA H N N 399 LYS HB2 H N N 400 LYS HB3 H N N 401 LYS HG2 H N N 402 LYS HG3 H N N 403 LYS HD2 H N N 404 LYS HD3 H N N 405 LYS HE2 H N N 406 LYS HE3 H N N 407 LYS HZ1 H N N 408 LYS HZ2 H N N 409 LYS HZ3 H N N 410 LYS HXT H N N 411 MET N N N N 412 MET CA C N S 413 MET C C N N 414 MET O O N N 415 MET CB C N N 416 MET CG C N N 417 MET SD S N N 418 MET CE C N N 419 MET OXT O N N 420 MET H H N N 421 MET H2 H N N 422 MET HA H N N 423 MET HB2 H N N 424 MET HB3 H N N 425 MET HG2 H N N 426 MET HG3 H N N 427 MET HE1 H N N 428 MET HE2 H N N 429 MET HE3 H N N 430 MET HXT H N N 431 PHE N N N N 432 PHE CA C N S 433 PHE C C N N 434 PHE O O N N 435 PHE CB C N N 436 PHE CG C Y N 437 PHE CD1 C Y N 438 PHE CD2 C Y N 439 PHE CE1 C Y N 440 PHE CE2 C Y N 441 PHE CZ C Y N 442 PHE OXT O N N 443 PHE H H N N 444 PHE H2 H N N 445 PHE HA H N N 446 PHE HB2 H N N 447 PHE HB3 H N N 448 PHE HD1 H N N 449 PHE HD2 H N N 450 PHE HE1 H N N 451 PHE HE2 H N N 452 PHE HZ H N N 453 PHE HXT H N N 454 PRO N N N N 455 PRO CA C N S 456 PRO C C N N 457 PRO O O N N 458 PRO CB C N N 459 PRO CG C N N 460 PRO CD C N N 461 PRO OXT O N N 462 PRO H H N N 463 PRO HA H N N 464 PRO HB2 H N N 465 PRO HB3 H N N 466 PRO HG2 H N N 467 PRO HG3 H N N 468 PRO HD2 H N N 469 PRO HD3 H N N 470 PRO HXT H N N 471 SER N N N N 472 SER CA C N S 473 SER C C N N 474 SER O O N N 475 SER CB C N N 476 SER OG O N N 477 SER OXT O N N 478 SER H H N N 479 SER H2 H N N 480 SER HA H N N 481 SER HB2 H N N 482 SER HB3 H N N 483 SER HG H N N 484 SER HXT H N N 485 THR N N N N 486 THR CA C N S 487 THR C C N N 488 THR O O N N 489 THR CB C N R 490 THR OG1 O N N 491 THR CG2 C N N 492 THR OXT O N N 493 THR H H N N 494 THR H2 H N N 495 THR HA H N N 496 THR HB H N N 497 THR HG1 H N N 498 THR HG21 H N N 499 THR HG22 H N N 500 THR HG23 H N N 501 THR HXT H N N 502 TRP N N N N 503 TRP CA C N S 504 TRP C C N N 505 TRP O O N N 506 TRP CB C N N 507 TRP CG C Y N 508 TRP CD1 C Y N 509 TRP CD2 C Y N 510 TRP NE1 N Y N 511 TRP CE2 C Y N 512 TRP CE3 C Y N 513 TRP CZ2 C Y N 514 TRP CZ3 C Y N 515 TRP CH2 C Y N 516 TRP OXT O N N 517 TRP H H N N 518 TRP H2 H N N 519 TRP HA H N N 520 TRP HB2 H N N 521 TRP HB3 H N N 522 TRP HD1 H N N 523 TRP HE1 H N N 524 TRP HE3 H N N 525 TRP HZ2 H N N 526 TRP HZ3 H N N 527 TRP HH2 H N N 528 TRP HXT H N N 529 TYR N N N N 530 TYR CA C N S 531 TYR C C N N 532 TYR O O N N 533 TYR CB C N N 534 TYR CG C Y N 535 TYR CD1 C Y N 536 TYR CD2 C Y N 537 TYR CE1 C Y N 538 TYR CE2 C Y N 539 TYR CZ C Y N 540 TYR OH O N N 541 TYR OXT O N N 542 TYR H H N N 543 TYR H2 H N N 544 TYR HA H N N 545 TYR HB2 H N N 546 TYR HB3 H N N 547 TYR HD1 H N N 548 TYR HD2 H N N 549 TYR HE1 H N N 550 TYR HE2 H N N 551 TYR HH H N N 552 TYR HXT H N N 553 VAL N N N N 554 VAL CA C N S 555 VAL C C N N 556 VAL O O N N 557 VAL CB C N N 558 VAL CG1 C N N 559 VAL CG2 C N N 560 VAL OXT O N N 561 VAL H H N N 562 VAL H2 H N N 563 VAL HA H N N 564 VAL HB H N N 565 VAL HG11 H N N 566 VAL HG12 H N N 567 VAL HG13 H N N 568 VAL HG21 H N N 569 VAL HG22 H N N 570 VAL HG23 H N N 571 VAL HXT H N N 572 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 FDG P "O5'" sing N N 232 FDG P OP1 doub N N 233 FDG P OP2 sing N N 234 FDG N1 C2 sing N N 235 FDG N1 C6 sing N N 236 FDG N1 HN1 sing N N 237 FDG C2 N2 sing N N 238 FDG C2 N3 doub N N 239 FDG N2 HN2 sing N N 240 FDG N2 HN2A sing N N 241 FDG N3 C4 sing N N 242 FDG C4 C5 doub N N 243 FDG C4 N9 sing N N 244 FDG C5 C6 sing N N 245 FDG C5 N7 sing N N 246 FDG C6 O6 doub N N 247 FDG N7 C8 sing N N 248 FDG N7 HN7 sing N N 249 FDG C8 O8 doub N N 250 FDG C8 N9 sing N N 251 FDG N9 "C1'" sing N N 252 FDG "C1'" "C2'" sing N N 253 FDG "C1'" "O4'" sing N N 254 FDG "C1'" "H1'" sing N N 255 FDG "C2'" "F2'" sing N N 256 FDG "C2'" "C3'" sing N N 257 FDG "C2'" "H2'" sing N N 258 FDG "C3'" "O3'" sing N N 259 FDG "C3'" "C4'" sing N N 260 FDG "C3'" "H3'" sing N N 261 FDG "O3'" "HO3'" sing N N 262 FDG "C4'" "O4'" sing N N 263 FDG "C4'" "C5'" sing N N 264 FDG "C4'" "H4'" sing N N 265 FDG "C5'" "O5'" sing N N 266 FDG "C5'" "H5'" sing N N 267 FDG "C5'" "H5'A" sing N N 268 FDG P OP3 sing N N 269 FDG OP3 HOP3 sing N N 270 FDG OP2 HOP2 sing N N 271 GLN N CA sing N N 272 GLN N H sing N N 273 GLN N H2 sing N N 274 GLN CA C sing N N 275 GLN CA CB sing N N 276 GLN CA HA sing N N 277 GLN C O doub N N 278 GLN C OXT sing N N 279 GLN CB CG sing N N 280 GLN CB HB2 sing N N 281 GLN CB HB3 sing N N 282 GLN CG CD sing N N 283 GLN CG HG2 sing N N 284 GLN CG HG3 sing N N 285 GLN CD OE1 doub N N 286 GLN CD NE2 sing N N 287 GLN NE2 HE21 sing N N 288 GLN NE2 HE22 sing N N 289 GLN OXT HXT sing N N 290 GLU N CA sing N N 291 GLU N H sing N N 292 GLU N H2 sing N N 293 GLU CA C sing N N 294 GLU CA CB sing N N 295 GLU CA HA sing N N 296 GLU C O doub N N 297 GLU C OXT sing N N 298 GLU CB CG sing N N 299 GLU CB HB2 sing N N 300 GLU CB HB3 sing N N 301 GLU CG CD sing N N 302 GLU CG HG2 sing N N 303 GLU CG HG3 sing N N 304 GLU CD OE1 doub N N 305 GLU CD OE2 sing N N 306 GLU OE2 HE2 sing N N 307 GLU OXT HXT sing N N 308 GLY N CA sing N N 309 GLY N H sing N N 310 GLY N H2 sing N N 311 GLY CA C sing N N 312 GLY CA HA2 sing N N 313 GLY CA HA3 sing N N 314 GLY C O doub N N 315 GLY C OXT sing N N 316 GLY OXT HXT sing N N 317 HIS N CA sing N N 318 HIS N H sing N N 319 HIS N H2 sing N N 320 HIS CA C sing N N 321 HIS CA CB sing N N 322 HIS CA HA sing N N 323 HIS C O doub N N 324 HIS C OXT sing N N 325 HIS CB CG sing N N 326 HIS CB HB2 sing N N 327 HIS CB HB3 sing N N 328 HIS CG ND1 sing Y N 329 HIS CG CD2 doub Y N 330 HIS ND1 CE1 doub Y N 331 HIS ND1 HD1 sing N N 332 HIS CD2 NE2 sing Y N 333 HIS CD2 HD2 sing N N 334 HIS CE1 NE2 sing Y N 335 HIS CE1 HE1 sing N N 336 HIS NE2 HE2 sing N N 337 HIS OXT HXT sing N N 338 HOH O H1 sing N N 339 HOH O H2 sing N N 340 ILE N CA sing N N 341 ILE N H sing N N 342 ILE N H2 sing N N 343 ILE CA C sing N N 344 ILE CA CB sing N N 345 ILE CA HA sing N N 346 ILE C O doub N N 347 ILE C OXT sing N N 348 ILE CB CG1 sing N N 349 ILE CB CG2 sing N N 350 ILE CB HB sing N N 351 ILE CG1 CD1 sing N N 352 ILE CG1 HG12 sing N N 353 ILE CG1 HG13 sing N N 354 ILE CG2 HG21 sing N N 355 ILE CG2 HG22 sing N N 356 ILE CG2 HG23 sing N N 357 ILE CD1 HD11 sing N N 358 ILE CD1 HD12 sing N N 359 ILE CD1 HD13 sing N N 360 ILE OXT HXT sing N N 361 LEU N CA sing N N 362 LEU N H sing N N 363 LEU N H2 sing N N 364 LEU CA C sing N N 365 LEU CA CB sing N N 366 LEU CA HA sing N N 367 LEU C O doub N N 368 LEU C OXT sing N N 369 LEU CB CG sing N N 370 LEU CB HB2 sing N N 371 LEU CB HB3 sing N N 372 LEU CG CD1 sing N N 373 LEU CG CD2 sing N N 374 LEU CG HG sing N N 375 LEU CD1 HD11 sing N N 376 LEU CD1 HD12 sing N N 377 LEU CD1 HD13 sing N N 378 LEU CD2 HD21 sing N N 379 LEU CD2 HD22 sing N N 380 LEU CD2 HD23 sing N N 381 LEU OXT HXT sing N N 382 LYS N CA sing N N 383 LYS N H sing N N 384 LYS N H2 sing N N 385 LYS CA C sing N N 386 LYS CA CB sing N N 387 LYS CA HA sing N N 388 LYS C O doub N N 389 LYS C OXT sing N N 390 LYS CB CG sing N N 391 LYS CB HB2 sing N N 392 LYS CB HB3 sing N N 393 LYS CG CD sing N N 394 LYS CG HG2 sing N N 395 LYS CG HG3 sing N N 396 LYS CD CE sing N N 397 LYS CD HD2 sing N N 398 LYS CD HD3 sing N N 399 LYS CE NZ sing N N 400 LYS CE HE2 sing N N 401 LYS CE HE3 sing N N 402 LYS NZ HZ1 sing N N 403 LYS NZ HZ2 sing N N 404 LYS NZ HZ3 sing N N 405 LYS OXT HXT sing N N 406 MET N CA sing N N 407 MET N H sing N N 408 MET N H2 sing N N 409 MET CA C sing N N 410 MET CA CB sing N N 411 MET CA HA sing N N 412 MET C O doub N N 413 MET C OXT sing N N 414 MET CB CG sing N N 415 MET CB HB2 sing N N 416 MET CB HB3 sing N N 417 MET CG SD sing N N 418 MET CG HG2 sing N N 419 MET CG HG3 sing N N 420 MET SD CE sing N N 421 MET CE HE1 sing N N 422 MET CE HE2 sing N N 423 MET CE HE3 sing N N 424 MET OXT HXT sing N N 425 PHE N CA sing N N 426 PHE N H sing N N 427 PHE N H2 sing N N 428 PHE CA C sing N N 429 PHE CA CB sing N N 430 PHE CA HA sing N N 431 PHE C O doub N N 432 PHE C OXT sing N N 433 PHE CB CG sing N N 434 PHE CB HB2 sing N N 435 PHE CB HB3 sing N N 436 PHE CG CD1 doub Y N 437 PHE CG CD2 sing Y N 438 PHE CD1 CE1 sing Y N 439 PHE CD1 HD1 sing N N 440 PHE CD2 CE2 doub Y N 441 PHE CD2 HD2 sing N N 442 PHE CE1 CZ doub Y N 443 PHE CE1 HE1 sing N N 444 PHE CE2 CZ sing Y N 445 PHE CE2 HE2 sing N N 446 PHE CZ HZ sing N N 447 PHE OXT HXT sing N N 448 PRO N CA sing N N 449 PRO N CD sing N N 450 PRO N H sing N N 451 PRO CA C sing N N 452 PRO CA CB sing N N 453 PRO CA HA sing N N 454 PRO C O doub N N 455 PRO C OXT sing N N 456 PRO CB CG sing N N 457 PRO CB HB2 sing N N 458 PRO CB HB3 sing N N 459 PRO CG CD sing N N 460 PRO CG HG2 sing N N 461 PRO CG HG3 sing N N 462 PRO CD HD2 sing N N 463 PRO CD HD3 sing N N 464 PRO OXT HXT sing N N 465 SER N CA sing N N 466 SER N H sing N N 467 SER N H2 sing N N 468 SER CA C sing N N 469 SER CA CB sing N N 470 SER CA HA sing N N 471 SER C O doub N N 472 SER C OXT sing N N 473 SER CB OG sing N N 474 SER CB HB2 sing N N 475 SER CB HB3 sing N N 476 SER OG HG sing N N 477 SER OXT HXT sing N N 478 THR N CA sing N N 479 THR N H sing N N 480 THR N H2 sing N N 481 THR CA C sing N N 482 THR CA CB sing N N 483 THR CA HA sing N N 484 THR C O doub N N 485 THR C OXT sing N N 486 THR CB OG1 sing N N 487 THR CB CG2 sing N N 488 THR CB HB sing N N 489 THR OG1 HG1 sing N N 490 THR CG2 HG21 sing N N 491 THR CG2 HG22 sing N N 492 THR CG2 HG23 sing N N 493 THR OXT HXT sing N N 494 TRP N CA sing N N 495 TRP N H sing N N 496 TRP N H2 sing N N 497 TRP CA C sing N N 498 TRP CA CB sing N N 499 TRP CA HA sing N N 500 TRP C O doub N N 501 TRP C OXT sing N N 502 TRP CB CG sing N N 503 TRP CB HB2 sing N N 504 TRP CB HB3 sing N N 505 TRP CG CD1 doub Y N 506 TRP CG CD2 sing Y N 507 TRP CD1 NE1 sing Y N 508 TRP CD1 HD1 sing N N 509 TRP CD2 CE2 doub Y N 510 TRP CD2 CE3 sing Y N 511 TRP NE1 CE2 sing Y N 512 TRP NE1 HE1 sing N N 513 TRP CE2 CZ2 sing Y N 514 TRP CE3 CZ3 doub Y N 515 TRP CE3 HE3 sing N N 516 TRP CZ2 CH2 doub Y N 517 TRP CZ2 HZ2 sing N N 518 TRP CZ3 CH2 sing Y N 519 TRP CZ3 HZ3 sing N N 520 TRP CH2 HH2 sing N N 521 TRP OXT HXT sing N N 522 TYR N CA sing N N 523 TYR N H sing N N 524 TYR N H2 sing N N 525 TYR CA C sing N N 526 TYR CA CB sing N N 527 TYR CA HA sing N N 528 TYR C O doub N N 529 TYR C OXT sing N N 530 TYR CB CG sing N N 531 TYR CB HB2 sing N N 532 TYR CB HB3 sing N N 533 TYR CG CD1 doub Y N 534 TYR CG CD2 sing Y N 535 TYR CD1 CE1 sing Y N 536 TYR CD1 HD1 sing N N 537 TYR CD2 CE2 doub Y N 538 TYR CD2 HD2 sing N N 539 TYR CE1 CZ doub Y N 540 TYR CE1 HE1 sing N N 541 TYR CE2 CZ sing Y N 542 TYR CE2 HE2 sing N N 543 TYR CZ OH sing N N 544 TYR OH HH sing N N 545 TYR OXT HXT sing N N 546 VAL N CA sing N N 547 VAL N H sing N N 548 VAL N H2 sing N N 549 VAL CA C sing N N 550 VAL CA CB sing N N 551 VAL CA HA sing N N 552 VAL C O doub N N 553 VAL C OXT sing N N 554 VAL CB CG1 sing N N 555 VAL CB CG2 sing N N 556 VAL CB HB sing N N 557 VAL CG1 HG11 sing N N 558 VAL CG1 HG12 sing N N 559 VAL CG1 HG13 sing N N 560 VAL CG2 HG21 sing N N 561 VAL CG2 HG22 sing N N 562 VAL CG2 HG23 sing N N 563 VAL OXT HXT sing N N 564 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 3KTU 'double helix' 3KTU 'b-form double helix' 3KTU 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 C DC 12 1_555 -1.835 0.107 -0.225 -13.844 3.003 1.497 1 B_DG2:DC29_C B 2 ? C 29 ? ? ? 1 B DT 3 1_555 C DA 11 1_555 -1.400 0.197 0.177 -10.989 -11.473 -0.697 2 B_DT3:DA28_C B 3 ? C 28 ? 20 1 1 B DA 4 1_555 C DT 10 1_555 -0.795 0.038 0.012 -13.644 -13.204 3.442 3 B_DA4:DT27_C B 4 ? C 27 ? 20 1 1 B DG 5 1_555 C DC 9 1_555 -0.547 -0.210 -0.236 0.493 -14.029 1.181 4 B_DG5:DC26_C B 5 ? C 26 ? 19 1 1 B DA 6 1_555 C DT 8 1_555 -0.418 0.275 0.147 -2.640 -8.278 -2.338 5 B_DA6:DT25_C B 6 ? C 25 ? 20 1 1 B DC 7 1_555 C DG 7 1_555 0.417 0.096 -0.119 11.364 -3.181 -4.873 6 B_DC7:DG24_C B 7 ? C 24 ? 19 1 1 B DT 9 1_555 C DA 5 1_555 -0.067 0.136 0.126 -13.878 -0.718 0.594 7 B_DT9:DA22_C B 9 ? C 22 ? 20 1 1 B DG 10 1_555 C DC 4 1_555 1.229 0.558 -0.151 2.219 -0.180 10.362 8 B_DG10:DC21_C B 10 ? C 21 ? ? 1 1 B DG 11 1_555 C DC 3 1_555 0.140 0.367 -0.143 0.710 -8.922 9.110 9 B_DG11:DC20_C B 11 ? C 20 ? ? 1 1 B DA 12 1_555 C DT 2 1_555 0.399 -0.244 0.299 0.864 -11.544 16.140 10 B_DA12:DT19_C B 12 ? C 19 ? 20 1 1 B DC 13 1_555 C DG 1 1_555 -1.982 0.667 -0.900 33.953 22.452 5.492 11 B_DC13:DG18_C B 13 ? C 18 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 C DC 12 1_555 B DT 3 1_555 C DA 11 1_555 -1.009 -0.347 3.424 -5.662 8.519 35.143 -1.799 0.781 3.369 13.752 9.141 36.556 1 BB_DG2DT3:DA28DC29_CC B 2 ? C 29 ? B 3 ? C 28 ? 1 B DT 3 1_555 C DA 11 1_555 B DA 4 1_555 C DT 10 1_555 -0.028 0.961 3.686 2.749 -6.881 46.163 1.846 0.289 3.509 -8.709 -3.480 46.722 2 BB_DT3DA4:DT27DA28_CC B 3 ? C 28 ? B 4 ? C 27 ? 1 B DA 4 1_555 C DT 10 1_555 B DG 5 1_555 C DC 9 1_555 -0.439 0.175 3.000 0.197 7.927 30.766 -1.025 0.836 2.950 14.638 -0.364 31.748 3 BB_DA4DG5:DC26DT27_CC B 4 ? C 27 ? B 5 ? C 26 ? 1 B DG 5 1_555 C DC 9 1_555 B DA 6 1_555 C DT 8 1_555 -0.602 0.135 3.306 -6.554 5.591 37.412 -0.514 0.072 3.345 8.578 10.055 38.357 4 BB_DG5DA6:DT25DC26_CC B 5 ? C 26 ? B 6 ? C 25 ? 1 B DA 6 1_555 C DT 8 1_555 B DC 7 1_555 C DG 7 1_555 0.095 -0.327 3.033 2.295 -1.115 35.949 -0.381 0.148 3.042 -1.804 -3.713 36.037 5 BB_DA6DC7:DG24DT25_CC B 6 ? C 25 ? B 7 ? C 24 ? 1 B DT 9 1_555 C DA 5 1_555 B DG 10 1_555 C DC 4 1_555 0.520 1.671 3.126 -1.449 -2.834 41.940 2.604 -0.865 2.993 -3.953 2.022 42.055 6 BB_DT9DG10:DC21DA22_CC B 9 ? C 22 ? B 10 ? C 21 ? 1 B DG 10 1_555 C DC 4 1_555 B DG 11 1_555 C DC 3 1_555 -0.465 0.445 3.289 -0.464 7.661 31.883 -0.561 0.743 3.310 13.699 0.830 32.770 7 BB_DG10DG11:DC20DC21_CC B 10 ? C 21 ? B 11 ? C 20 ? 1 B DG 11 1_555 C DC 3 1_555 B DA 12 1_555 C DT 2 1_555 0.232 -0.511 3.200 -4.860 2.508 39.530 -1.029 -0.884 3.114 3.686 7.143 39.892 8 BB_DG11DA12:DT19DC20_CC B 11 ? C 20 ? B 12 ? C 19 ? 1 B DA 12 1_555 C DT 2 1_555 B DC 13 1_555 C DG 1 1_555 0.529 -0.225 3.384 5.439 -18.423 30.301 2.491 -0.017 3.073 -31.574 -9.322 35.756 9 BB_DA12DC13:DG18DT19_CC B 12 ? C 19 ? B 13 ? C 18 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'CALCIUM ION' CA 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1EBM _pdbx_initial_refinement_model.details 'PDB ENTRY 1EBM' #