HEADER OXIDOREDUCTASE 28-NOV-09 3KUX TITLE STRUCTURE OF THE YPO2259 PUTATIVE OXIDOREDUCTASE FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: MVIM4, Y2101, YPO2259, YP_2055; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL KEYWDS OXIDOREDUCTASE FAMILY, CSGID, STRUCTURAL GENOMICS, CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.M.ANDERSON,Z.WAWRZAK,E.GORDON,K.KWON,A.EDWARDS,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 01-NOV-17 3KUX 1 REMARK REVDAT 3 14-DEC-11 3KUX 1 JRNL REVDAT 2 13-JUL-11 3KUX 1 VERSN REVDAT 1 22-DEC-09 3KUX 0 JRNL AUTH S.M.ANDERSON,Z.WAWRZAK,E.GORDON,K.KWON,A.EDWARDS, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL STRUCTURE OF THE YPO2259 PUTATIVE OXIDOREDUCTASE FROM JRNL TITL 2 YERSINIA PESTIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 13251 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 655 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 903 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3090 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2700 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.23000 REMARK 3 B33 (A**2) : 0.35000 REMARK 3 B12 (A**2) : -0.12000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.730 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.320 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 25.893 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.899 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2776 ; 0.004 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3787 ; 0.796 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 349 ; 4.941 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;33.965 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 438 ;14.272 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;11.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 423 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2127 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1742 ; 1.344 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2806 ; 2.503 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1034 ; 3.910 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 980 ; 6.026 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): -7.9290 32.0170 -12.8230 REMARK 3 T TENSOR REMARK 3 T11: 0.2717 T22: 0.1351 REMARK 3 T33: 0.3822 T12: -0.0182 REMARK 3 T13: -0.2826 T23: 0.0023 REMARK 3 L TENSOR REMARK 3 L11: 4.5705 L22: 6.7646 REMARK 3 L33: 2.1942 L12: -2.0549 REMARK 3 L13: -1.5138 L23: -1.5527 REMARK 3 S TENSOR REMARK 3 S11: 0.4125 S12: -0.3539 S13: -1.2161 REMARK 3 S21: -0.6561 S22: 0.4336 S23: 1.3649 REMARK 3 S31: 0.1578 S32: 0.0197 S33: -0.8460 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 99 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7400 24.6780 -13.1130 REMARK 3 T TENSOR REMARK 3 T11: 0.3794 T22: 0.1477 REMARK 3 T33: 0.5562 T12: 0.0986 REMARK 3 T13: -0.4798 T23: -0.0444 REMARK 3 L TENSOR REMARK 3 L11: 7.3177 L22: 7.1543 REMARK 3 L33: 1.2944 L12: -2.8838 REMARK 3 L13: -0.2597 L23: -0.5531 REMARK 3 S TENSOR REMARK 3 S11: 0.9525 S12: 0.1256 S13: -1.7359 REMARK 3 S21: -0.7758 S22: -0.0316 S23: 1.2443 REMARK 3 S31: 0.5836 S32: 0.2595 S33: -0.9210 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 100 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7790 44.1020 -6.5560 REMARK 3 T TENSOR REMARK 3 T11: 0.3182 T22: 0.3651 REMARK 3 T33: 0.0837 T12: 0.0479 REMARK 3 T13: -0.0146 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.8232 L22: 1.8208 REMARK 3 L33: 1.2764 L12: -0.3361 REMARK 3 L13: 0.7675 L23: 0.8784 REMARK 3 S TENSOR REMARK 3 S11: 0.1927 S12: 0.2642 S13: -0.1199 REMARK 3 S21: -0.2466 S22: -0.0782 S23: -0.0389 REMARK 3 S31: -0.0937 S32: 0.2516 S33: -0.1145 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3760 31.4030 12.6010 REMARK 3 T TENSOR REMARK 3 T11: 0.6387 T22: 0.4072 REMARK 3 T33: 0.7031 T12: -0.1160 REMARK 3 T13: 0.0140 T23: -0.1596 REMARK 3 L TENSOR REMARK 3 L11: 2.8249 L22: -5.6549 REMARK 3 L33: 6.1932 L12: -0.7063 REMARK 3 L13: 0.6192 L23: -5.1799 REMARK 3 S TENSOR REMARK 3 S11: 0.0411 S12: 0.8805 S13: -1.2205 REMARK 3 S21: -1.3121 S22: -0.0061 S23: 0.9086 REMARK 3 S31: 1.3806 S32: -0.4029 S33: -0.0350 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 307 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2010 48.4120 3.1610 REMARK 3 T TENSOR REMARK 3 T11: 0.2803 T22: 0.3054 REMARK 3 T33: 0.1016 T12: 0.0103 REMARK 3 T13: -0.0035 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 0.9014 L22: 0.4090 REMARK 3 L33: 1.1242 L12: -0.0202 REMARK 3 L13: 0.7209 L23: 0.4820 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: 0.0179 S13: -0.0616 REMARK 3 S21: -0.1069 S22: 0.0427 S23: -0.0221 REMARK 3 S31: -0.0800 S32: -0.0986 S33: -0.0817 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 349 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8680 38.4300 -4.5940 REMARK 3 T TENSOR REMARK 3 T11: 0.2468 T22: 0.3765 REMARK 3 T33: 0.0691 T12: 0.0433 REMARK 3 T13: 0.0477 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 5.9625 L22: 0.7857 REMARK 3 L33: 9.8472 L12: -0.1805 REMARK 3 L13: 7.7409 L23: 0.1161 REMARK 3 S TENSOR REMARK 3 S11: 0.1600 S12: 0.7997 S13: -0.1480 REMARK 3 S21: -0.0800 S22: 0.0225 S23: -0.1686 REMARK 3 S31: 0.0183 S32: 0.9028 S33: -0.1826 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3KUX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056478. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) DIAMOND LAUE REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BERYLLIUM LENS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13282 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% TACSIMATE, 10MM MAGNESIUM REMARK 280 CHLORIDE, 100MM HEPES, 300MM NDSB-195, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 115.00667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 57.50333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.25500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.75167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 143.75833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 115.00667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 57.50333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 28.75167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 86.25500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 143.75833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 48.77500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 84.48078 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 28.75167 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -48.77500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 84.48078 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -28.75167 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 167 REMARK 465 GLY A 168 REMARK 465 ALA A 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 19 -66.94 -109.42 REMARK 500 LEU A 32 88.85 -69.58 REMARK 500 ILE A 50 68.19 -118.99 REMARK 500 PRO A 51 61.42 -65.04 REMARK 500 ALA A 87 4.87 -68.32 REMARK 500 GLN A 161 -75.61 -76.08 REMARK 500 GLU A 165 -124.32 57.39 REMARK 500 ARG A 275 73.46 -104.78 REMARK 500 HIS A 283 -63.00 -99.86 REMARK 500 ASN A 298 62.27 -152.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 350 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: IDP02458 RELATED DB: TARGETDB DBREF 3KUX A 1 349 UNP Q7CIK0 Q7CIK0_YERPE 1 349 SEQADV 3KUX SER A -2 UNP Q7CIK0 EXPRESSION TAG SEQADV 3KUX ASN A -1 UNP Q7CIK0 EXPRESSION TAG SEQADV 3KUX ALA A 0 UNP Q7CIK0 EXPRESSION TAG SEQRES 1 A 352 SER ASN ALA MSE ALA ASP LYS ILE LYS VAL GLY LEU LEU SEQRES 2 A 352 GLY TYR GLY TYR ALA SER LYS THR PHE HIS ALA PRO LEU SEQRES 3 A 352 ILE MSE GLY THR PRO GLY LEU GLU LEU ALA GLY VAL SER SEQRES 4 A 352 SER SER ASP ALA SER LYS VAL HIS ALA ASP TRP PRO ALA SEQRES 5 A 352 ILE PRO VAL VAL SER ASP PRO GLN MSE LEU PHE ASN ASP SEQRES 6 A 352 PRO SER ILE ASP LEU ILE VAL ILE PRO THR PRO ASN ASP SEQRES 7 A 352 THR HIS PHE PRO LEU ALA GLN SER ALA LEU ALA ALA GLY SEQRES 8 A 352 LYS HIS VAL VAL VAL ASP LYS PRO PHE THR VAL THR LEU SEQRES 9 A 352 SER GLN ALA ASN ALA LEU LYS GLU HIS ALA ASP ASP ALA SEQRES 10 A 352 GLY LEU LEU LEU SER VAL PHE HIS ASN ARG ARG TRP ASP SEQRES 11 A 352 SER ASP PHE LEU THR LEU LYS THR LEU LEU ALA GLU GLY SEQRES 12 A 352 SER LEU GLY ASN VAL VAL TYR PHE GLU SER HIS PHE ASP SEQRES 13 A 352 ARG TYR ARG PRO GLU ILE ARG GLN ARG TRP ARG GLU GLN SEQRES 14 A 352 ALA GLY ALA GLY GLY GLY ILE TRP TYR ASP LEU GLY PRO SEQRES 15 A 352 HIS LEU LEU ASP GLN ALA LEU GLN LEU PHE GLY LEU PRO SEQRES 16 A 352 GLU THR LEU ASN VAL ASP LEU GLY MSE LEU ARG PRO GLY SEQRES 17 A 352 SER GLN SER VAL ASP TYR PHE HIS ALA VAL LEU SER TYR SEQRES 18 A 352 PRO GLY GLN ARG VAL VAL LEU HIS SER THR VAL LEU ALA SEQRES 19 A 352 ALA ALA GLU THR ALA ARG TYR ILE VAL HIS GLY THR GLN SEQRES 20 A 352 GLY SER TYR ILE LYS PHE GLY VAL ASP PRO GLN GLU ASP SEQRES 21 A 352 ARG LEU LYS ALA GLY GLU ARG LEU PRO GLN ALA ASP TRP SEQRES 22 A 352 GLY TYR ASP MSE ARG ASP GLY ILE VAL THR LEU SER HIS SEQRES 23 A 352 ASP ASN VAL LEU THR GLU LYS PRO LEU LEU THR LEU PRO SEQRES 24 A 352 GLY ASN TYR PRO ALA TYR TYR ALA GLY ILE ARG ASP ALA SEQRES 25 A 352 ILE TRP GLY THR ALA PRO ASN PRO VAL PRO ALA THR GLU SEQRES 26 A 352 ALA ILE LYS VAL MSE GLU LEU ILE GLU LEU GLY ILE ALA SEQRES 27 A 352 SER ASP GLN GLN LYS LYS ALA LEU PRO ILE ILE ALA LYS SEQRES 28 A 352 ASN MODRES 3KUX MSE A 1 MET SELENOMETHIONINE MODRES 3KUX MSE A 25 MET SELENOMETHIONINE MODRES 3KUX MSE A 58 MET SELENOMETHIONINE MODRES 3KUX MSE A 201 MET SELENOMETHIONINE MODRES 3KUX MSE A 274 MET SELENOMETHIONINE MODRES 3KUX MSE A 327 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 25 8 HET MSE A 58 8 HET MSE A 201 8 HET MSE A 274 13 HET MSE A 327 8 HET CL A 350 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 2 CL CL 1- FORMUL 3 HOH *44(H2 O) HELIX 1 1 GLY A 13 PHE A 19 1 7 HELIX 2 2 PHE A 19 GLY A 26 1 8 HELIX 3 3 ASP A 39 ALA A 45 1 7 HELIX 4 4 ASP A 55 ASP A 62 1 8 HELIX 5 5 THR A 76 ALA A 87 1 12 HELIX 6 6 THR A 100 ALA A 114 1 15 HELIX 7 7 HIS A 122 TRP A 126 5 5 HELIX 8 8 ASP A 127 GLY A 140 1 14 HELIX 9 9 GLY A 172 GLY A 190 1 19 HELIX 10 10 PRO A 254 ALA A 261 1 8 HELIX 11 11 TYR A 299 TRP A 311 1 13 HELIX 12 12 PRO A 319 LYS A 340 1 22 SHEET 1 A 6 VAL A 52 VAL A 53 0 SHEET 2 A 6 LEU A 30 SER A 36 1 N VAL A 35 O VAL A 53 SHEET 3 A 6 ILE A 5 LEU A 10 1 N VAL A 7 O GLU A 31 SHEET 4 A 6 LEU A 67 ILE A 70 1 O LEU A 67 N GLY A 8 SHEET 5 A 6 HIS A 90 VAL A 93 1 O VAL A 92 N ILE A 70 SHEET 6 A 6 LEU A 118 VAL A 120 1 O SER A 119 N VAL A 93 SHEET 1 B 9 LEU A 287 LEU A 292 0 SHEET 2 B 9 GLY A 277 SER A 282 -1 N VAL A 279 O LYS A 290 SHEET 3 B 9 GLY A 245 LYS A 249 -1 N SER A 246 O THR A 280 SHEET 4 B 9 TYR A 238 GLY A 242 -1 N GLY A 242 O GLY A 245 SHEET 5 B 9 VAL A 145 ASP A 153 -1 N VAL A 146 O HIS A 241 SHEET 6 B 9 GLN A 221 THR A 228 1 O VAL A 224 N PHE A 148 SHEET 7 B 9 TYR A 211 TYR A 218 -1 N ALA A 214 O LEU A 225 SHEET 8 B 9 THR A 194 GLY A 200 -1 N GLY A 200 O TYR A 211 SHEET 9 B 9 LEU A 343 PRO A 344 -1 O LEU A 343 N LEU A 195 LINK C MSE A 1 N ALA A 2 1555 1555 1.33 LINK C MSE A 25 N GLY A 26 1555 1555 1.33 LINK C MSE A 58 N LEU A 59 1555 1555 1.33 LINK C MSE A 201 N LEU A 202 1555 1555 1.33 LINK C MSE A 274 N ARG A 275 1555 1555 1.33 LINK C MSE A 327 N GLU A 328 1555 1555 1.33 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C ILE A 24 N MSE A 25 1555 1555 1.33 LINK C GLN A 57 N MSE A 58 1555 1555 1.33 LINK C GLY A 200 N MSE A 201 1555 1555 1.33 LINK C ASP A 273 N MSE A 274 1555 1555 1.33 LINK C VAL A 326 N MSE A 327 1555 1555 1.32 CISPEP 1 PRO A 48 ALA A 49 0 1.81 CISPEP 2 LYS A 95 PRO A 96 0 -2.23 CISPEP 3 TRP A 163 ARG A 164 0 4.29 CISPEP 4 GLY A 171 GLY A 172 0 -0.03 CISPEP 5 LEU A 265 PRO A 266 0 -0.82 SITE 1 AC1 2 MSE A 201 ARG A 222 CRYST1 97.550 97.550 172.510 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010251 0.005919 0.000000 0.00000 SCALE2 0.000000 0.011837 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005797 0.00000