HEADER TRANSCRIPTION 28-NOV-09 3KV1 TITLE CRYSTAL STRUCTURE OF PUTATIVE SUGAR-BINDING DOMAIN OF TRANSCRIPTIONAL TITLE 2 REPRESSOR FROM VIBRIO FISCHERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REPRESSOR; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUGAR-BINDING DOMAIN RESIDUES 63-326; COMPND 5 EC: 2.7.1.69; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO FISCHERI; SOURCE 3 ORGANISM_TAXID: 312309; SOURCE 4 STRAIN: ES114; SOURCE 5 GENE: LSRR, VF_A0400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS ALPHA-BETA STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MARSHALL,J.BEARDEN,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 3 27-NOV-24 3KV1 1 REMARK SEQADV LINK REVDAT 2 13-JUL-11 3KV1 1 VERSN REVDAT 1 22-DEC-09 3KV1 0 JRNL AUTH Y.KIM,N.MARSHALL,J.BEARDEN,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE SUGAR-BINDING DOMAIN OF JRNL TITL 2 TRANSCRIPTIONAL REPRESSOR FROM VIBRIO FISCHERI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 27162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.360 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.4082 - 3.6585 0.98 2656 211 0.1673 0.1868 REMARK 3 2 3.6585 - 2.9056 1.00 2665 211 0.1557 0.1961 REMARK 3 3 2.9056 - 2.5388 0.99 2606 208 0.1601 0.1924 REMARK 3 4 2.5388 - 2.3069 0.99 2590 206 0.1575 0.2053 REMARK 3 5 2.3069 - 2.1417 0.98 2584 206 0.1586 0.2022 REMARK 3 6 2.1417 - 2.0155 0.99 2582 205 0.1465 0.1924 REMARK 3 7 2.0155 - 1.9146 0.97 2546 201 0.1577 0.2077 REMARK 3 8 1.9146 - 1.8313 0.95 2457 196 0.1742 0.2213 REMARK 3 9 1.8313 - 1.7608 0.93 2455 195 0.2060 0.2630 REMARK 3 10 1.7608 - 1.7001 0.78 2022 160 0.2503 0.2761 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 59.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.75 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.16200 REMARK 3 B22 (A**2) : -0.04530 REMARK 3 B33 (A**2) : 5.20730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -6.31450 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2205 REMARK 3 ANGLE : 1.381 2998 REMARK 3 CHIRALITY : 0.095 333 REMARK 3 PLANARITY : 0.006 410 REMARK 3 DIHEDRAL : 18.344 842 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 6:18) REMARK 3 ORIGIN FOR THE GROUP (A): 45.3089 23.0309 -11.6187 REMARK 3 T TENSOR REMARK 3 T11: 0.2779 T22: 0.4358 REMARK 3 T33: 0.2694 T12: -0.0011 REMARK 3 T13: -0.0636 T23: -0.0580 REMARK 3 L TENSOR REMARK 3 L11: 4.1438 L22: 2.7241 REMARK 3 L33: 1.6475 L12: 0.5191 REMARK 3 L13: 1.6313 L23: 1.8104 REMARK 3 S TENSOR REMARK 3 S11: 0.1461 S12: 1.5067 S13: -0.5321 REMARK 3 S21: -0.7197 S22: 0.0436 S23: 0.0768 REMARK 3 S31: -0.0365 S32: 0.3036 S33: -0.1216 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 19:87) REMARK 3 ORIGIN FOR THE GROUP (A): 51.3615 20.5376 6.8092 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1673 REMARK 3 T33: 0.1593 T12: 0.0031 REMARK 3 T13: 0.0188 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.0138 L22: 0.8264 REMARK 3 L33: 0.8160 L12: 0.3919 REMARK 3 L13: 0.6283 L23: 0.0380 REMARK 3 S TENSOR REMARK 3 S11: 0.0629 S12: 0.0897 S13: -0.1120 REMARK 3 S21: -0.0190 S22: -0.0344 S23: 0.0340 REMARK 3 S31: 0.1564 S32: 0.0280 S33: -0.0160 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 88:106) REMARK 3 ORIGIN FOR THE GROUP (A): 52.4416 27.0782 19.2329 REMARK 3 T TENSOR REMARK 3 T11: 0.2793 T22: 0.2307 REMARK 3 T33: 0.1344 T12: -0.0387 REMARK 3 T13: 0.0617 T23: -0.0106 REMARK 3 L TENSOR REMARK 3 L11: 1.4680 L22: 2.5252 REMARK 3 L33: 0.0814 L12: -0.5835 REMARK 3 L13: -0.1306 L23: 0.4690 REMARK 3 S TENSOR REMARK 3 S11: -0.0633 S12: -0.7496 S13: 0.0198 REMARK 3 S21: 0.9102 S22: -0.0430 S23: 0.0815 REMARK 3 S31: 0.1288 S32: 0.1533 S33: 0.0865 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 107:155) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2969 37.2515 13.9938 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.1668 REMARK 3 T33: 0.2107 T12: -0.0236 REMARK 3 T13: -0.0412 T23: 0.0408 REMARK 3 L TENSOR REMARK 3 L11: 1.1130 L22: 0.3686 REMARK 3 L33: 1.7302 L12: 0.3590 REMARK 3 L13: 0.5400 L23: 0.0835 REMARK 3 S TENSOR REMARK 3 S11: -0.1544 S12: 0.1203 S13: 0.2633 REMARK 3 S21: 0.0669 S22: -0.0210 S23: -0.0229 REMARK 3 S31: -0.1895 S32: 0.1879 S33: 0.1664 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 156:192) REMARK 3 ORIGIN FOR THE GROUP (A): 41.4901 43.0257 10.8897 REMARK 3 T TENSOR REMARK 3 T11: 0.2350 T22: 0.2359 REMARK 3 T33: 0.3451 T12: 0.0055 REMARK 3 T13: -0.0361 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 0.6350 L22: 0.3575 REMARK 3 L33: 0.9487 L12: -0.1934 REMARK 3 L13: 0.4823 L23: 0.3032 REMARK 3 S TENSOR REMARK 3 S11: -0.0575 S12: -0.1870 S13: -0.0737 REMARK 3 S21: 0.0791 S22: -0.0654 S23: 0.2268 REMARK 3 S31: -0.1761 S32: -0.1672 S33: 0.0609 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 193:200) REMARK 3 ORIGIN FOR THE GROUP (A): 45.6133 45.0482 -1.9790 REMARK 3 T TENSOR REMARK 3 T11: 0.4263 T22: 0.3149 REMARK 3 T33: 0.4267 T12: -0.0426 REMARK 3 T13: -0.0928 T23: 0.0496 REMARK 3 L TENSOR REMARK 3 L11: 2.8847 L22: 1.3584 REMARK 3 L33: 3.9828 L12: -1.3710 REMARK 3 L13: -1.1939 L23: -0.7818 REMARK 3 S TENSOR REMARK 3 S11: 0.3146 S12: 0.0527 S13: 0.6857 REMARK 3 S21: 0.3826 S22: 0.2683 S23: -0.7076 REMARK 3 S31: -0.8252 S32: 0.2855 S33: -0.1182 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 201:262) REMARK 3 ORIGIN FOR THE GROUP (A): 45.9642 33.7978 0.3886 REMARK 3 T TENSOR REMARK 3 T11: 0.1696 T22: 0.1983 REMARK 3 T33: 0.2361 T12: -0.0070 REMARK 3 T13: -0.0269 T23: 0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.8610 L22: 0.8853 REMARK 3 L33: 1.3561 L12: 0.0769 REMARK 3 L13: 0.9715 L23: 0.0891 REMARK 3 S TENSOR REMARK 3 S11: -0.0274 S12: 0.0593 S13: 0.1097 REMARK 3 S21: -0.0021 S22: -0.0885 S23: 0.2359 REMARK 3 S31: -0.0722 S32: -0.1111 S33: 0.0795 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056482. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28012 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 23.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.64800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXS, MLPHARE, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CHES PH 9.5, 30% (V/V) PEG-400, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.69100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.73700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.69100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.73700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 117.76129 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 46.09371 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 265 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 PHE A 1 REMARK 465 HIS A 2 REMARK 465 PRO A 3 REMARK 465 VAL A 4 REMARK 465 TYR A 5 REMARK 465 ARG A 90 REMARK 465 SER A 91 REMARK 465 GLY A 92 REMARK 465 ASP A 93 REMARK 465 GLU A 263 REMARK 465 GLU A 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN A 96 CB ASN A 96 CG -0.160 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 96 N - CA - CB ANGL. DEV. = -13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 71 42.05 -93.43 REMARK 500 SER A 160 -18.20 -47.84 REMARK 500 ASP A 200 107.06 -53.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 271 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 283 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 284 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 285 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC38671.1 RELATED DB: TARGETDB DBREF 3KV1 A 1 264 UNP Q5E0H6 Q5E0H6_VIBF1 63 326 SEQADV 3KV1 SER A -2 UNP Q5E0H6 EXPRESSION TAG SEQADV 3KV1 ASN A -1 UNP Q5E0H6 EXPRESSION TAG SEQADV 3KV1 ALA A 0 UNP Q5E0H6 EXPRESSION TAG SEQRES 1 A 267 SER ASN ALA PHE HIS PRO VAL TYR SER VAL GLN LEU GLU SEQRES 2 A 267 GLN LYS LEU VAL GLU LYS PHE ASN LEU LYS ARG ALA LEU SEQRES 3 A 267 ILE SER LEU ASP GLN PRO ASN THR ASN GLU GLN ARG LYS SEQRES 4 A 267 GLN VAL ALA ALA LEU VAL SER SER TYR LEU ASN ASN ASN SEQRES 5 A 267 LEU GLN GLU GLY MSE ALA VAL ALA VAL GLY GLN GLY GLN SEQRES 6 A 267 ASN VAL ALA ALA VAL ALA ASP HIS ALA GLY ILE VAL THR SEQRES 7 A 267 GLN ARG ASN ALA ARG PHE VAL SER ALA ILE GLY GLY THR SEQRES 8 A 267 HIS ARG SER GLY ASP ILE ILE ASN ALA ASP HIS ILE CYS SEQRES 9 A 267 ARG ARG LEU ALA LYS LYS TYR GLY GLY SER SER GLU THR SEQRES 10 A 267 LEU TYR ALA PRO ALA TYR VAL ASN ASP PRO SER LEU ARG SEQRES 11 A 267 SER ALA PHE MSE GLU HIS ALA THR ILE LYS GLU THR LEU SEQRES 12 A 267 SER GLN ALA ARG LYS ALA GLU PHE ALA LEU VAL GLY ILE SEQRES 13 A 267 GLY ASP MSE ASP GLU ASN SER HIS MSE VAL LYS LEU GLY SEQRES 14 A 267 PHE PHE THR PRO LYS GLU PHE VAL GLU ALA ARG LEU ASN SEQRES 15 A 267 ASP GLY ILE VAL GLY ASP ILE GLY GLY PHE ASP PHE PHE SEQRES 16 A 267 LYS LEU ASP GLY THR ASP ALA ASP THR LEU MSE ARG GLY SEQRES 17 A 267 ARG VAL ILE GLY LEU GLU MSE GLU ASP LEU ARG GLN ILE SEQRES 18 A 267 PRO ASN VAL VAL ALA MSE ALA SER GLU SER ARG LYS ALA SEQRES 19 A 267 LEU SER ILE MSE GLY ALA LEU ARG THR GLY VAL ILE ASP SEQRES 20 A 267 VAL LEU ALA THR SER VAL SER CYS ALA MSE ALA LEU LEU SEQRES 21 A 267 ASN LEU ALA GLU ASN GLU GLU MODRES 3KV1 MSE A 54 MET SELENOMETHIONINE MODRES 3KV1 MSE A 131 MET SELENOMETHIONINE MODRES 3KV1 MSE A 156 MET SELENOMETHIONINE MODRES 3KV1 MSE A 162 MET SELENOMETHIONINE MODRES 3KV1 MSE A 203 MET SELENOMETHIONINE MODRES 3KV1 MSE A 212 MET SELENOMETHIONINE MODRES 3KV1 MSE A 224 MET SELENOMETHIONINE MODRES 3KV1 MSE A 235 MET SELENOMETHIONINE MODRES 3KV1 MSE A 254 MET SELENOMETHIONINE HET MSE A 54 8 HET MSE A 131 8 HET MSE A 156 8 HET MSE A 162 16 HET MSE A 203 16 HET MSE A 212 8 HET MSE A 224 16 HET MSE A 235 16 HET MSE A 254 8 HET GOL A 271 6 HET GOL A 282 6 HET GOL A 283 6 HET GOL A 284 6 HET GOL A 285 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 HOH *166(H2 O) HELIX 1 1 SER A 6 ASN A 18 1 13 HELIX 2 2 ASN A 30 LEU A 50 1 21 HELIX 3 3 GLY A 61 HIS A 70 1 10 HELIX 4 4 ASN A 96 GLY A 109 1 14 HELIX 5 5 ASP A 123 GLU A 132 1 10 HELIX 6 6 HIS A 133 LYS A 145 1 13 HELIX 7 7 MSE A 156 SER A 160 1 5 HELIX 8 8 SER A 160 LEU A 165 1 6 HELIX 9 9 THR A 169 ASN A 179 1 11 HELIX 10 10 THR A 201 VAL A 207 5 7 HELIX 11 11 GLU A 211 GLN A 217 1 7 HELIX 12 12 GLU A 227 ARG A 229 5 3 HELIX 13 13 LYS A 230 THR A 240 1 11 HELIX 14 14 VAL A 250 ASN A 262 1 13 SHEET 1 A 7 ARG A 21 SER A 25 0 SHEET 2 A 7 VAL A 245 SER A 249 1 O LEU A 246 N LEU A 23 SHEET 3 A 7 ASN A 220 MSE A 224 1 N ALA A 223 O VAL A 245 SHEET 4 A 7 PHE A 148 ASP A 155 1 N ALA A 149 O VAL A 222 SHEET 5 A 7 ALA A 55 VAL A 58 1 N ALA A 57 O PHE A 148 SHEET 6 A 7 ARG A 80 SER A 83 1 O VAL A 82 N VAL A 56 SHEET 7 A 7 SER A 111 GLU A 113 1 O SER A 111 N PHE A 81 SHEET 1 B 6 ARG A 21 SER A 25 0 SHEET 2 B 6 VAL A 245 SER A 249 1 O LEU A 246 N LEU A 23 SHEET 3 B 6 ASN A 220 MSE A 224 1 N ALA A 223 O VAL A 245 SHEET 4 B 6 PHE A 148 ASP A 155 1 N ALA A 149 O VAL A 222 SHEET 5 B 6 ILE A 182 ILE A 186 -1 O ASP A 185 N GLY A 154 SHEET 6 B 6 ASP A 190 LYS A 193 -1 O PHE A 192 N VAL A 183 LINK C MSE A 54 N ALA A 55 1555 1555 1.31 LINK C MSE A 131 N AGLU A 132 1555 1555 1.33 LINK C MSE A 131 N BGLU A 132 1555 1555 1.33 LINK C MSE A 156 N AASP A 157 1555 1555 1.33 LINK C MSE A 156 N BASP A 157 1555 1555 1.33 LINK C AMSE A 162 N VAL A 163 1555 1555 1.33 LINK C BMSE A 162 N VAL A 163 1555 1555 1.33 LINK C AMSE A 203 N AARG A 204 1555 1555 1.33 LINK C BMSE A 203 N BARG A 204 1555 1555 1.33 LINK C MSE A 212 N GLU A 213 1555 1555 1.32 LINK C AMSE A 224 N ALA A 225 1555 1555 1.33 LINK C BMSE A 224 N ALA A 225 1555 1555 1.32 LINK C AMSE A 235 N GLY A 236 1555 1555 1.33 LINK C BMSE A 235 N GLY A 236 1555 1555 1.33 LINK C MSE A 254 N ALA A 255 1555 1555 1.34 SITE 1 AC1 10 GLN A 60 ILE A 94 GLY A 152 GLU A 158 SITE 2 AC1 10 ASN A 159 HIS A 161 ASP A 185 GLY A 188 SITE 3 AC1 10 HOH A 267 HOH A 280 SITE 1 AC2 4 ASN A 47 GLN A 51 THR A 75 HOH A 328 SITE 1 AC3 4 ASP A 195 THR A 197 ARG A 239 HOH A 408 SITE 1 AC4 6 ARG A 21 LEU A 41 SER A 44 TYR A 45 SITE 2 AC4 6 ASN A 48 ASN A 49 SITE 1 AC5 6 ARG A 177 LEU A 178 GLY A 181 ARG A 229 SITE 2 AC5 6 HOH A 355 HOH A 398 CRYST1 129.382 43.474 47.536 90.00 104.15 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007729 0.000000 0.001949 0.00000 SCALE2 0.000000 0.023002 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021695 0.00000