HEADER H3K4ME3 BINDING PROTEIN, TRANSFERASE 29-NOV-09 3KV6 TITLE STRUCTURE OF KIAA1718, HUMAN JUMONJI DEMETHYLASE, IN COMPLEX WITH TITLE 2 ALPHA-KETOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1D; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-488; COMPND 5 EC: 2.-.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: JHDM1D, KIAA1718; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PXC720 KEYWDS EPIGENETICS, HISTONE CODE, JUMONJI LYSINE DEMETHYLASE, METAL-BINDING, KEYWDS 2 ZINC-FINGER, H3K4ME3 BINDING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,A.K.UPADHYAY,H.H.QI,X.ZHANG,Y.SHI,X.CHENG REVDAT 4 06-SEP-23 3KV6 1 REMARK LINK REVDAT 3 13-JUL-11 3KV6 1 VERSN REVDAT 2 09-FEB-10 3KV6 1 JRNL REVDAT 1 22-DEC-09 3KV6 0 JRNL AUTH J.R.HORTON,A.K.UPADHYAY,H.H.QI,X.ZHANG,Y.SHI,X.CHENG JRNL TITL ENZYMATIC AND STRUCTURAL INSIGHTS FOR SUBSTRATE SPECIFICITY JRNL TITL 2 OF A FAMILY OF JUMONJI HISTONE LYSINE DEMETHYLASES. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 38 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20023638 JRNL DOI 10.1038/NSMB.1753 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 132891.340 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 66070 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3289 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.99 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5603 REMARK 3 BIN R VALUE (WORKING SET) : 0.3290 REMARK 3 BIN FREE R VALUE : 0.3710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 260 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7143 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.14000 REMARK 3 B22 (A**2) : -5.66000 REMARK 3 B33 (A**2) : 3.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 35.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.42 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.800 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.170 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.400 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.200 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : BULK SOLVENT MODELING REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 12.12 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KV6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056487. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70224 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.890 REMARK 200 RESOLUTION RANGE LOW (A) : 34.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2YU2 AND 1WEP REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-10% (V/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.2 M KSCN, AND 0.1 M BISTRIS PH 6.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.70000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.60000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.70000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.60000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 41620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 63.40000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 125.20000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 ALA A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ALA A 18 REMARK 465 ALA A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 SER A 22 REMARK 465 VAL A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 PRO A 26 REMARK 465 GLY A 27 REMARK 465 ARG A 28 REMARK 465 ALA A 29 REMARK 465 SER A 30 REMARK 465 ALA A 31 REMARK 465 PRO A 32 REMARK 465 GLY A 480 REMARK 465 LYS A 481 REMARK 465 PRO A 482 REMARK 465 VAL A 483 REMARK 465 LYS A 484 REMARK 465 SER A 485 REMARK 465 GLN A 486 REMARK 465 GLY A 487 REMARK 465 ILE A 488 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLY D 3 REMARK 465 ALA D 4 REMARK 465 ALA D 5 REMARK 465 ALA D 6 REMARK 465 ALA D 7 REMARK 465 VAL D 8 REMARK 465 ALA D 9 REMARK 465 ALA D 10 REMARK 465 GLY D 11 REMARK 465 ALA D 12 REMARK 465 ALA D 13 REMARK 465 ALA D 14 REMARK 465 GLY D 15 REMARK 465 ALA D 16 REMARK 465 ALA D 17 REMARK 465 ALA D 18 REMARK 465 ALA D 19 REMARK 465 ALA D 20 REMARK 465 VAL D 21 REMARK 465 SER D 22 REMARK 465 VAL D 23 REMARK 465 ALA D 24 REMARK 465 ALA D 25 REMARK 465 PRO D 26 REMARK 465 GLY D 27 REMARK 465 ARG D 28 REMARK 465 ALA D 29 REMARK 465 SER D 30 REMARK 465 ALA D 31 REMARK 465 GLY D 480 REMARK 465 LYS D 481 REMARK 465 PRO D 482 REMARK 465 VAL D 483 REMARK 465 LYS D 484 REMARK 465 SER D 485 REMARK 465 GLN D 486 REMARK 465 GLY D 487 REMARK 465 ILE D 488 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 ASP A 392 CG OD1 OD2 REMARK 470 LEU A 393 CG CD1 CD2 REMARK 470 PHE A 394 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 GLU A 416 CG CD OE1 OE2 REMARK 470 ARG A 418 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 PHE A 422 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN A 423 CG CD OE1 NE2 REMARK 470 LYS A 440 CG CD CE NZ REMARK 470 LYS A 445 CG CD CE NZ REMARK 470 PHE A 453 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 LYS A 466 CG CD CE NZ REMARK 470 GLU A 467 CG CD OE1 OE2 REMARK 470 ILE A 472 CG1 CG2 CD1 REMARK 470 ARG A 473 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 475 CG1 CG2 CD1 REMARK 470 GLU A 476 CG CD OE1 OE2 REMARK 470 GLU A 477 CG CD OE1 OE2 REMARK 470 GLU A 478 CG CD OE1 OE2 REMARK 470 ASN A 479 CG OD1 ND2 REMARK 470 LYS D 153 CG CD CE NZ REMARK 470 LYS D 389 CG CD CE NZ REMARK 470 LEU D 393 CG CD1 CD2 REMARK 470 PHE D 394 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 415 CG CD CE NZ REMARK 470 LYS D 433 CG CD CE NZ REMARK 470 LYS D 445 CG CD CE NZ REMARK 470 PHE D 453 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS D 466 CG CD CE NZ REMARK 470 ARG D 473 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 475 CG1 CG2 CD1 REMARK 470 GLU D 476 CG CD OE1 OE2 REMARK 470 GLU D 477 CG CD OE1 OE2 REMARK 470 GLU D 478 CG CD OE1 OE2 REMARK 470 ASN D 479 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D 397 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 40 163.57 57.04 REMARK 500 ARG A 43 57.09 38.19 REMARK 500 ASN A 99 -168.06 -111.18 REMARK 500 TRP A 100 -14.22 -176.60 REMARK 500 TYR A 105 4.24 -62.32 REMARK 500 LYS A 113 112.72 85.27 REMARK 500 TYR A 185 -70.08 -83.09 REMARK 500 PRO A 220 5.78 -69.63 REMARK 500 VAL A 241 159.80 -48.97 REMARK 500 SER A 249 126.36 -30.11 REMARK 500 ASP A 284 134.99 -38.44 REMARK 500 GLU A 298 116.32 -165.72 REMARK 500 SER A 318 7.51 -69.64 REMARK 500 ASN A 374 51.79 -141.63 REMARK 500 PRO A 391 159.22 -43.90 REMARK 500 LEU A 393 -6.06 -57.90 REMARK 500 LYS A 395 -164.26 -109.30 REMARK 500 PRO A 397 -71.69 -15.71 REMARK 500 LYS A 444 126.99 -39.62 REMARK 500 VAL A 448 -19.38 -42.21 REMARK 500 ASN A 458 -10.93 -148.80 REMARK 500 CYS D 40 175.62 60.44 REMARK 500 ARG D 43 71.09 51.66 REMARK 500 ILE D 57 -66.13 -98.90 REMARK 500 ASP D 78 -70.81 -80.24 REMARK 500 SER D 92 154.73 -48.44 REMARK 500 ARG D 98 -3.53 -144.61 REMARK 500 TYR D 105 4.65 -63.09 REMARK 500 SER D 112 -74.89 -39.20 REMARK 500 LEU D 146 92.08 -67.74 REMARK 500 PHE D 156 79.17 -166.22 REMARK 500 ASP D 157 22.29 -140.03 REMARK 500 PRO D 163 -2.82 -59.58 REMARK 500 PRO D 175 8.35 -62.66 REMARK 500 VAL D 266 32.45 -146.46 REMARK 500 ASP D 361 117.07 -32.03 REMARK 500 ASN D 374 40.53 -144.02 REMARK 500 LEU D 393 -8.39 56.08 REMARK 500 PRO D 397 -75.98 -29.27 REMARK 500 ASP D 420 33.86 -95.96 REMARK 500 VAL D 448 -30.47 -33.67 REMARK 500 ILE D 455 114.65 -38.62 REMARK 500 VAL D 459 -161.92 -110.97 REMARK 500 ARG D 460 93.05 -160.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 490 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 40 SG REMARK 620 2 CYS A 42 SG 103.5 REMARK 620 3 HIS A 63 ND1 113.0 105.2 REMARK 620 4 CYS A 66 SG 103.2 108.1 122.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 489 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 55 SG REMARK 620 2 CYS A 58 SG 102.1 REMARK 620 3 CYS A 82 SG 106.1 123.4 REMARK 620 4 CYS A 85 SG 115.3 116.0 94.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 A 491 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 282 NE2 REMARK 620 2 ASP A 284 OD2 126.7 REMARK 620 3 HIS A 354 NE2 102.7 88.4 REMARK 620 4 AKG A 702 O2 82.2 118.9 142.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 490 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 40 SG REMARK 620 2 CYS D 42 SG 102.9 REMARK 620 3 HIS D 63 ND1 104.8 104.7 REMARK 620 4 CYS D 66 SG 104.3 112.6 125.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 489 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 55 SG REMARK 620 2 CYS D 58 SG 100.1 REMARK 620 3 CYS D 82 SG 111.7 112.0 REMARK 620 4 CYS D 85 SG 112.5 109.5 110.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE2 D 491 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 282 NE2 REMARK 620 2 ASP D 284 OD1 123.5 REMARK 620 3 HIS D 354 NE2 99.1 81.7 REMARK 620 4 AKG D 701 O2 105.1 100.0 149.3 REMARK 620 5 AKG D 701 O5 75.2 161.3 98.1 70.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 A 491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY A 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 489 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 490 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE2 D 491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OXY D 492 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG D 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KV5 RELATED DB: PDB REMARK 900 STRUCTURE OF KIAA1718, HUMAN JUMONJI DEMETHYLASE, IN COMPLEX WITH N- REMARK 900 OXALYLGLYCINE REMARK 900 RELATED ID: 3KV4 RELATED DB: PDB REMARK 900 STRUCTURE OF PHF8 IN COMPLEX WITH HISTONE H3 REMARK 900 RELATED ID: 3KV9 RELATED DB: PDB REMARK 900 RELATED ID: 3KVA RELATED DB: PDB REMARK 900 RELATED ID: 3KVB RELATED DB: PDB DBREF 3KV6 A 1 488 UNP Q6ZMT4 JHD1D_HUMAN 1 488 DBREF 3KV6 D 1 488 UNP Q6ZMT4 JHD1D_HUMAN 1 488 SEQRES 1 A 488 MET ALA GLY ALA ALA ALA ALA VAL ALA ALA GLY ALA ALA SEQRES 2 A 488 ALA GLY ALA ALA ALA ALA ALA VAL SER VAL ALA ALA PRO SEQRES 3 A 488 GLY ARG ALA SER ALA PRO PRO PRO PRO PRO PRO VAL TYR SEQRES 4 A 488 CYS VAL CYS ARG GLN PRO TYR ASP VAL ASN ARG PHE MET SEQRES 5 A 488 ILE GLU CYS ASP ILE CYS LYS ASP TRP PHE HIS GLY SER SEQRES 6 A 488 CYS VAL GLY VAL GLU GLU HIS HIS ALA VAL ASP ILE ASP SEQRES 7 A 488 LEU TYR HIS CYS PRO ASN CYS ALA VAL LEU HIS GLY SER SEQRES 8 A 488 SER LEU MET LYS LYS ARG ARG ASN TRP HIS ARG HIS ASP SEQRES 9 A 488 TYR THR GLU ILE ASP ASP GLY SER LYS PRO VAL GLN ALA SEQRES 10 A 488 GLY THR ARG THR PHE ILE LYS GLU LEU ARG SER ARG VAL SEQRES 11 A 488 PHE PRO SER ALA ASP GLU ILE ILE ILE LYS MET HIS GLY SEQRES 12 A 488 SER GLN LEU THR GLN ARG TYR LEU GLU LYS HIS GLY PHE SEQRES 13 A 488 ASP VAL PRO ILE MET VAL PRO LYS LEU ASP ASP LEU GLY SEQRES 14 A 488 LEU ARG LEU PRO SER PRO THR PHE SER VAL MET ASP VAL SEQRES 15 A 488 GLU ARG TYR VAL GLY GLY ASP LYS VAL ILE ASP VAL ILE SEQRES 16 A 488 ASP VAL ALA ARG GLN ALA ASP SER LYS MET THR LEU HIS SEQRES 17 A 488 ASN TYR VAL LYS TYR PHE MET ASN PRO ASN ARG PRO LYS SEQRES 18 A 488 VAL LEU ASN VAL ILE SER LEU GLU PHE SER ASP THR LYS SEQRES 19 A 488 MET SER GLU LEU VAL GLU VAL PRO ASP ILE ALA LYS LYS SEQRES 20 A 488 LEU SER TRP VAL GLU ASN TYR TRP PRO ASP ASP SER VAL SEQRES 21 A 488 PHE PRO LYS PRO PHE VAL GLN LYS TYR CYS LEU MET GLY SEQRES 22 A 488 VAL GLN ASP SER TYR THR ASP PHE HIS ILE ASP PHE GLY SEQRES 23 A 488 GLY THR SER VAL TRP TYR HIS VAL LEU TRP GLY GLU LYS SEQRES 24 A 488 ILE PHE TYR LEU ILE LYS PRO THR ASP GLU ASN LEU ALA SEQRES 25 A 488 ARG TYR GLU SER TRP SER SER SER VAL THR GLN SER GLU SEQRES 26 A 488 VAL PHE PHE GLY ASP LYS VAL ASP LYS CYS TYR LYS CYS SEQRES 27 A 488 VAL VAL LYS GLN GLY HIS THR LEU PHE VAL PRO THR GLY SEQRES 28 A 488 TRP ILE HIS ALA VAL LEU THR SER GLN ASP CYS MET ALA SEQRES 29 A 488 PHE GLY GLY ASN PHE LEU HIS ASN LEU ASN ILE GLY MET SEQRES 30 A 488 GLN LEU ARG CYS TYR GLU MET GLU LYS ARG LEU LYS THR SEQRES 31 A 488 PRO ASP LEU PHE LYS PHE PRO PHE PHE GLU ALA ILE CYS SEQRES 32 A 488 TRP PHE VAL ALA LYS ASN LEU LEU GLU THR LEU LYS GLU SEQRES 33 A 488 LEU ARG GLU ASP GLY PHE GLN PRO GLN THR TYR LEU VAL SEQRES 34 A 488 GLN GLY VAL LYS ALA LEU HIS THR ALA LEU LYS LEU TRP SEQRES 35 A 488 MET LYS LYS GLU LEU VAL SER GLU HIS ALA PHE GLU ILE SEQRES 36 A 488 PRO ASP ASN VAL ARG PRO GLY HIS LEU ILE LYS GLU LEU SEQRES 37 A 488 SER LYS VAL ILE ARG ALA ILE GLU GLU GLU ASN GLY LYS SEQRES 38 A 488 PRO VAL LYS SER GLN GLY ILE SEQRES 1 D 488 MET ALA GLY ALA ALA ALA ALA VAL ALA ALA GLY ALA ALA SEQRES 2 D 488 ALA GLY ALA ALA ALA ALA ALA VAL SER VAL ALA ALA PRO SEQRES 3 D 488 GLY ARG ALA SER ALA PRO PRO PRO PRO PRO PRO VAL TYR SEQRES 4 D 488 CYS VAL CYS ARG GLN PRO TYR ASP VAL ASN ARG PHE MET SEQRES 5 D 488 ILE GLU CYS ASP ILE CYS LYS ASP TRP PHE HIS GLY SER SEQRES 6 D 488 CYS VAL GLY VAL GLU GLU HIS HIS ALA VAL ASP ILE ASP SEQRES 7 D 488 LEU TYR HIS CYS PRO ASN CYS ALA VAL LEU HIS GLY SER SEQRES 8 D 488 SER LEU MET LYS LYS ARG ARG ASN TRP HIS ARG HIS ASP SEQRES 9 D 488 TYR THR GLU ILE ASP ASP GLY SER LYS PRO VAL GLN ALA SEQRES 10 D 488 GLY THR ARG THR PHE ILE LYS GLU LEU ARG SER ARG VAL SEQRES 11 D 488 PHE PRO SER ALA ASP GLU ILE ILE ILE LYS MET HIS GLY SEQRES 12 D 488 SER GLN LEU THR GLN ARG TYR LEU GLU LYS HIS GLY PHE SEQRES 13 D 488 ASP VAL PRO ILE MET VAL PRO LYS LEU ASP ASP LEU GLY SEQRES 14 D 488 LEU ARG LEU PRO SER PRO THR PHE SER VAL MET ASP VAL SEQRES 15 D 488 GLU ARG TYR VAL GLY GLY ASP LYS VAL ILE ASP VAL ILE SEQRES 16 D 488 ASP VAL ALA ARG GLN ALA ASP SER LYS MET THR LEU HIS SEQRES 17 D 488 ASN TYR VAL LYS TYR PHE MET ASN PRO ASN ARG PRO LYS SEQRES 18 D 488 VAL LEU ASN VAL ILE SER LEU GLU PHE SER ASP THR LYS SEQRES 19 D 488 MET SER GLU LEU VAL GLU VAL PRO ASP ILE ALA LYS LYS SEQRES 20 D 488 LEU SER TRP VAL GLU ASN TYR TRP PRO ASP ASP SER VAL SEQRES 21 D 488 PHE PRO LYS PRO PHE VAL GLN LYS TYR CYS LEU MET GLY SEQRES 22 D 488 VAL GLN ASP SER TYR THR ASP PHE HIS ILE ASP PHE GLY SEQRES 23 D 488 GLY THR SER VAL TRP TYR HIS VAL LEU TRP GLY GLU LYS SEQRES 24 D 488 ILE PHE TYR LEU ILE LYS PRO THR ASP GLU ASN LEU ALA SEQRES 25 D 488 ARG TYR GLU SER TRP SER SER SER VAL THR GLN SER GLU SEQRES 26 D 488 VAL PHE PHE GLY ASP LYS VAL ASP LYS CYS TYR LYS CYS SEQRES 27 D 488 VAL VAL LYS GLN GLY HIS THR LEU PHE VAL PRO THR GLY SEQRES 28 D 488 TRP ILE HIS ALA VAL LEU THR SER GLN ASP CYS MET ALA SEQRES 29 D 488 PHE GLY GLY ASN PHE LEU HIS ASN LEU ASN ILE GLY MET SEQRES 30 D 488 GLN LEU ARG CYS TYR GLU MET GLU LYS ARG LEU LYS THR SEQRES 31 D 488 PRO ASP LEU PHE LYS PHE PRO PHE PHE GLU ALA ILE CYS SEQRES 32 D 488 TRP PHE VAL ALA LYS ASN LEU LEU GLU THR LEU LYS GLU SEQRES 33 D 488 LEU ARG GLU ASP GLY PHE GLN PRO GLN THR TYR LEU VAL SEQRES 34 D 488 GLN GLY VAL LYS ALA LEU HIS THR ALA LEU LYS LEU TRP SEQRES 35 D 488 MET LYS LYS GLU LEU VAL SER GLU HIS ALA PHE GLU ILE SEQRES 36 D 488 PRO ASP ASN VAL ARG PRO GLY HIS LEU ILE LYS GLU LEU SEQRES 37 D 488 SER LYS VAL ILE ARG ALA ILE GLU GLU GLU ASN GLY LYS SEQRES 38 D 488 PRO VAL LYS SER GLN GLY ILE HET ZN A 489 1 HET ZN A 490 1 HET FE2 A 491 1 HET OXY A 492 2 HET AKG A 702 10 HET ZN D 489 1 HET ZN D 490 1 HET FE2 D 491 1 HET OXY D 492 2 HET AKG D 701 10 HETNAM ZN ZINC ION HETNAM FE2 FE (II) ION HETNAM OXY OXYGEN MOLECULE HETNAM AKG 2-OXOGLUTARIC ACID FORMUL 3 ZN 4(ZN 2+) FORMUL 5 FE2 2(FE 2+) FORMUL 6 OXY 2(O2) FORMUL 7 AKG 2(C5 H6 O5) FORMUL 13 HOH *165(H2 O) HELIX 1 1 GLY A 64 GLY A 68 1 5 HELIX 2 2 GLU A 70 ALA A 74 5 5 HELIX 3 3 CYS A 82 GLY A 90 1 9 HELIX 4 4 THR A 119 ARG A 129 1 11 HELIX 5 5 SER A 133 ILE A 137 5 5 HELIX 6 6 HIS A 142 LEU A 146 5 5 HELIX 7 7 THR A 147 GLY A 155 1 9 HELIX 8 8 SER A 178 GLY A 187 1 10 HELIX 9 9 LEU A 207 ASN A 216 1 10 HELIX 10 10 THR A 233 VAL A 239 5 7 HELIX 11 11 PRO A 242 SER A 249 1 8 HELIX 12 12 SER A 249 TRP A 255 1 7 HELIX 13 13 ASP A 284 THR A 288 5 5 HELIX 14 14 THR A 307 SER A 318 1 12 HELIX 15 15 THR A 322 VAL A 326 5 5 HELIX 16 16 PHE A 327 LYS A 331 5 5 HELIX 17 17 ASN A 374 LEU A 388 1 15 HELIX 18 18 PRO A 391 LYS A 395 5 5 HELIX 19 19 PHE A 398 GLU A 419 1 22 HELIX 20 20 GLN A 425 LYS A 444 1 20 HELIX 21 21 LEU A 447 ALA A 452 1 6 HELIX 22 22 ARG A 460 ASN A 479 1 20 HELIX 23 23 GLY D 64 GLY D 68 1 5 HELIX 24 24 GLU D 70 VAL D 75 1 6 HELIX 25 25 CYS D 82 GLY D 90 1 9 HELIX 26 26 THR D 119 ARG D 129 1 11 HELIX 27 27 SER D 133 ILE D 137 5 5 HELIX 28 28 HIS D 142 LEU D 146 5 5 HELIX 29 29 THR D 147 GLY D 155 1 9 HELIX 30 30 SER D 178 GLY D 187 1 10 HELIX 31 31 VAL D 197 GLN D 200 5 4 HELIX 32 32 LEU D 207 ASN D 216 1 10 HELIX 33 33 THR D 233 VAL D 239 5 7 HELIX 34 34 PRO D 242 SER D 249 1 8 HELIX 35 35 SER D 249 TRP D 255 1 7 HELIX 36 36 ASP D 284 THR D 288 5 5 HELIX 37 37 THR D 307 SER D 320 1 14 HELIX 38 38 THR D 322 VAL D 326 5 5 HELIX 39 39 PHE D 327 VAL D 332 5 6 HELIX 40 40 ASN D 374 LEU D 388 1 15 HELIX 41 41 PHE D 398 ASP D 420 1 23 HELIX 42 42 GLN D 425 TRP D 442 1 18 HELIX 43 43 GLU D 446 HIS D 451 5 6 HELIX 44 44 ARG D 460 ASN D 479 1 20 SHEET 1 A 2 MET A 52 GLU A 54 0 SHEET 2 A 2 TRP A 61 HIS A 63 -1 O PHE A 62 N ILE A 53 SHEET 1 B 2 ILE A 77 LEU A 79 0 SHEET 2 B 2 LEU A 93 MET A 94 -1 O LEU A 93 N LEU A 79 SHEET 1 C 6 ILE A 139 LYS A 140 0 SHEET 2 C 6 ILE A 160 VAL A 162 1 O MET A 161 N ILE A 139 SHEET 3 C 6 THR A 345 VAL A 348 -1 O THR A 345 N VAL A 162 SHEET 4 C 6 SER A 289 ILE A 304 -1 N TYR A 292 O LEU A 346 SHEET 5 C 6 ILE A 353 PHE A 369 -1 O PHE A 365 N HIS A 293 SHEET 6 C 6 TYR A 278 HIS A 282 -1 N HIS A 282 O HIS A 354 SHEET 1 D 7 ASP A 202 THR A 206 0 SHEET 2 D 7 VAL A 191 ASP A 196 -1 N ILE A 192 O MET A 205 SHEET 3 D 7 LEU A 223 GLU A 229 -1 O ASN A 224 N ILE A 195 SHEET 4 D 7 TYR A 269 GLY A 273 -1 O MET A 272 N VAL A 225 SHEET 5 D 7 ILE A 353 PHE A 369 -1 O ALA A 364 N LEU A 271 SHEET 6 D 7 SER A 289 ILE A 304 -1 N HIS A 293 O PHE A 365 SHEET 7 D 7 TYR A 336 LYS A 341 -1 O CYS A 338 N PHE A 301 SHEET 1 E 2 VAL D 38 TYR D 39 0 SHEET 2 E 2 GLN D 44 PRO D 45 -1 O GLN D 44 N TYR D 39 SHEET 1 F 2 MET D 52 GLU D 54 0 SHEET 2 F 2 TRP D 61 HIS D 63 -1 O PHE D 62 N ILE D 53 SHEET 1 G 2 ILE D 77 LEU D 79 0 SHEET 2 G 2 LEU D 93 MET D 94 -1 O LEU D 93 N ASP D 78 SHEET 1 H 6 ILE D 139 LYS D 140 0 SHEET 2 H 6 ILE D 160 VAL D 162 1 O MET D 161 N ILE D 139 SHEET 3 H 6 THR D 345 VAL D 348 -1 O THR D 345 N VAL D 162 SHEET 4 H 6 SER D 289 ILE D 304 -1 N TYR D 292 O LEU D 346 SHEET 5 H 6 ILE D 353 PHE D 369 -1 O PHE D 369 N SER D 289 SHEET 6 H 6 SER D 277 HIS D 282 -1 N THR D 279 O VAL D 356 SHEET 1 I 5 ASN D 224 GLU D 229 0 SHEET 2 I 5 TYR D 269 GLY D 273 -1 O MET D 272 N VAL D 225 SHEET 3 I 5 ILE D 353 PHE D 369 -1 O ALA D 364 N LEU D 271 SHEET 4 I 5 SER D 289 ILE D 304 -1 N SER D 289 O PHE D 369 SHEET 5 I 5 TYR D 336 LYS D 341 -1 O CYS D 338 N PHE D 301 SHEET 1 J 2 VAL D 191 ASP D 196 0 SHEET 2 J 2 ALA D 201 THR D 206 -1 O MET D 205 N ILE D 192 LINK SG CYS A 40 ZN ZN A 490 1555 1555 2.22 LINK SG CYS A 42 ZN ZN A 490 1555 1555 2.22 LINK SG CYS A 55 ZN ZN A 489 1555 1555 2.29 LINK SG CYS A 58 ZN ZN A 489 1555 1555 2.26 LINK ND1 HIS A 63 ZN ZN A 490 1555 1555 1.84 LINK SG CYS A 66 ZN ZN A 490 1555 1555 2.19 LINK SG CYS A 82 ZN ZN A 489 1555 1555 2.31 LINK SG CYS A 85 ZN ZN A 489 1555 1555 2.17 LINK NE2 HIS A 282 FE FE2 A 491 1555 1555 2.57 LINK OD2 ASP A 284 FE FE2 A 491 1555 1555 2.61 LINK NE2 HIS A 354 FE FE2 A 491 1555 1555 2.31 LINK FE FE2 A 491 O2 AKG A 702 1555 1555 2.26 LINK SG CYS D 40 ZN ZN D 490 1555 1555 2.12 LINK SG CYS D 42 ZN ZN D 490 1555 1555 2.12 LINK SG CYS D 55 ZN ZN D 489 1555 1555 2.24 LINK SG CYS D 58 ZN ZN D 489 1555 1555 2.16 LINK ND1 HIS D 63 ZN ZN D 490 1555 1555 2.01 LINK SG CYS D 66 ZN ZN D 490 1555 1555 2.18 LINK SG CYS D 82 ZN ZN D 489 1555 1555 2.36 LINK SG CYS D 85 ZN ZN D 489 1555 1555 2.08 LINK NE2 HIS D 282 FE FE2 D 491 1555 1555 2.28 LINK OD1 ASP D 284 FE FE2 D 491 1555 1555 2.69 LINK NE2 HIS D 354 FE FE2 D 491 1555 1555 2.21 LINK FE FE2 D 491 O2 AKG D 701 1555 1555 2.16 LINK FE FE2 D 491 O5 AKG D 701 1555 1555 2.68 SITE 1 AC1 4 CYS A 55 CYS A 58 CYS A 82 CYS A 85 SITE 1 AC2 4 CYS A 40 CYS A 42 HIS A 63 CYS A 66 SITE 1 AC3 5 HIS A 282 ASP A 284 TYR A 292 HIS A 354 SITE 2 AC3 5 AKG A 702 SITE 1 AC4 3 TYR A 292 ASN A 368 HOH A 549 SITE 1 AC5 10 ASN A 224 ILE A 226 THR A 279 HIS A 282 SITE 2 AC5 10 ASP A 284 TYR A 292 LYS A 299 VAL A 356 SITE 3 AC5 10 THR A 358 FE2 A 491 SITE 1 AC6 4 CYS D 55 CYS D 58 CYS D 82 CYS D 85 SITE 1 AC7 4 CYS D 40 CYS D 42 HIS D 63 CYS D 66 SITE 1 AC8 5 HIS D 282 ASP D 284 TYR D 292 HIS D 354 SITE 2 AC8 5 AKG D 701 SITE 1 AC9 2 ASN D 368 AKG D 701 SITE 1 BC1 9 ILE D 226 THR D 279 HIS D 282 ASP D 284 SITE 2 BC1 9 TYR D 292 LYS D 299 VAL D 356 FE2 D 491 SITE 3 BC1 9 OXY D 492 CRYST1 63.400 125.200 206.000 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015773 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007987 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004854 0.00000