HEADER TRANSFERASE 30-NOV-09 3KW2 TITLE CRYSTAL STRUCTURE OF PROBABLE RRNA-METHYLTRANSFERASE FROM TITLE 2 PORPHYROMONAS GINGIVALIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE R-RNA METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS ATCC 33277; SOURCE 3 ORGANISM_TAXID: 431947; SOURCE 4 STRAIN: ATCC 33277 /DSM 20709 /JCM 12257; SOURCE 5 GENE: PGN_0201; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX4(BC) KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 2 10-FEB-21 3KW2 1 AUTHOR JRNL REMARK SEQADV REVDAT 2 2 1 LINK REVDAT 1 19-JAN-10 3KW2 0 JRNL AUTH U.A.RAMAGOPAL,R.TORO,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PROBABLE RRNA-METHYLTRANSFERASE FROM JRNL TITL 2 PORPHYROMONAS GINGIVALIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1723 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2287 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2520 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2670 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.212 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.470 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3939 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5343 ; 1.491 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 486 ; 6.324 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;33.305 ;22.652 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 684 ;16.542 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;17.017 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 597 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2987 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2417 ; 0.974 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3913 ; 1.785 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1522 ; 2.571 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1430 ; 4.320 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS, U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 3KW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056518. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : 0.14600 REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.70 REMARK 200 R MERGE FOR SHELL (I) : 0.90000 REMARK 200 R SYM FOR SHELL (I) : 0.82000 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.5, 25% PEG 3350, REMARK 280 0.2M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.28250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.81700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.43000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.81700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.28250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.43000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 SER A 2 REMARK 465 ALA A 172 REMARK 465 GLU A 173 REMARK 465 ILE A 174 REMARK 465 THR A 175 REMARK 465 GLN A 176 REMARK 465 GLU A 248 REMARK 465 GLY A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 HIS A 255 REMARK 465 MSE B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 SER B 2 REMARK 465 ALA B 172 REMARK 465 GLU B 173 REMARK 465 ILE B 174 REMARK 465 THR B 175 REMARK 465 GLN B 176 REMARK 465 ILE B 246 REMARK 465 GLY B 247 REMARK 465 GLU B 248 REMARK 465 GLY B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 HIS B 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 171 NE CZ NH1 NH2 REMARK 470 LEU B 3 CG CD1 CD2 REMARK 470 TYR B 244 CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 245 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 4 C - N - CA ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO A 4 C - N - CD ANGL. DEV. = -13.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 4 147.46 -35.35 REMARK 500 ASP A 75 -176.76 72.74 REMARK 500 ASP A 75 -175.27 72.74 REMARK 500 VAL A 166 -53.11 -126.27 REMARK 500 VAL A 170 80.49 -66.71 REMARK 500 ARG A 178 -66.90 -93.04 REMARK 500 ASP A 200 171.70 63.28 REMARK 500 PRO B 72 24.13 -79.70 REMARK 500 ASP B 75 -171.17 63.71 REMARK 500 PHE B 184 -30.48 -132.64 REMARK 500 ASP B 200 169.87 71.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ASSIGNMENT OF BOUND LIGAND "ADN" IS PURELY BASED ON DENSITY REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADN B 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11285C RELATED DB: TARGETDB DBREF 3KW2 A 2 248 UNP B2RH75 B2RH75_PORG3 2 248 DBREF 3KW2 B 2 248 UNP B2RH75 B2RH75_PORG3 2 248 SEQADV 3KW2 MSE A -1 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 SER A 0 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 LEU A 1 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 GLY A 249 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS A 250 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS A 251 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS A 252 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS A 253 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS A 254 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS A 255 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 MSE B -1 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 SER B 0 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 LEU B 1 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 GLY B 249 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS B 250 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS B 251 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS B 252 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS B 253 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS B 254 UNP B2RH75 EXPRESSION TAG SEQADV 3KW2 HIS B 255 UNP B2RH75 EXPRESSION TAG SEQRES 1 A 257 MSE SER LEU SER LEU PRO LEU PHE TYR ALA PRO ASP ILE SEQRES 2 A 257 GLU GLN SER ASP ARG LEU PRO ASP ASP GLU ALA GLY HIS SEQRES 3 A 257 ILE LEU ARG VAL LEU ARG MSE GLN ALA GLY ASP ARG LEU SEQRES 4 A 257 ARG LEU THR ASP GLY ARG GLY SER PHE PHE ASP ALA VAL SEQRES 5 A 257 ILE GLU THR ALA ASP ARG LYS SER CYS TYR VAL SER VAL SEQRES 6 A 257 CYS GLY GLN GLU SER TRP GLN LYS PRO TRP ARG ASP ARG SEQRES 7 A 257 ILE THR ILE ALA ILE ALA PRO THR LYS GLN SER GLU ARG SEQRES 8 A 257 MSE GLU TRP MSE LEU GLU LYS LEU VAL GLU ILE GLY VAL SEQRES 9 A 257 ASP GLU VAL VAL PHE ILE GLU SER GLU HIS SER GLU ARG SEQRES 10 A 257 ARG ARG ILE LYS ALA GLU ARG LEU GLU ARG ILE ALA ILE SEQRES 11 A 257 SER ALA MSE LYS GLN SER LEU LYS ALA SER PHE PRO VAL SEQRES 12 A 257 ILE ARG VAL ASN ILE PRO ILE GLN THR VAL ILE ALA ASP SEQRES 13 A 257 THR PRO LYS ALA ALA VAL ARG LEU ILE ALA TYR VAL ASP SEQRES 14 A 257 GLU ALA VAL ARG ALA GLU ILE THR GLN GLY ARG GLY TYR SEQRES 15 A 257 PRO SER ASP PHE TYR HIS VAL GLY GLN ASP VAL LEU ILE SEQRES 16 A 257 LEU ILE GLY PRO GLU GLY ASP PHE SER PRO SER GLU VAL SEQRES 17 A 257 GLU SER ALA LEU LEU ALA GLY PHE ALA PRO VAL SER LEU SEQRES 18 A 257 GLY GLU SER ARG LEU ARG THR GLU THR ALA GLY LEU VAL SEQRES 19 A 257 ALA CYS GLN TRP ILE HIS THR LEU GLN ALA CYS TYR ARG SEQRES 20 A 257 ILE GLY GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 257 MSE SER LEU SER LEU PRO LEU PHE TYR ALA PRO ASP ILE SEQRES 2 B 257 GLU GLN SER ASP ARG LEU PRO ASP ASP GLU ALA GLY HIS SEQRES 3 B 257 ILE LEU ARG VAL LEU ARG MSE GLN ALA GLY ASP ARG LEU SEQRES 4 B 257 ARG LEU THR ASP GLY ARG GLY SER PHE PHE ASP ALA VAL SEQRES 5 B 257 ILE GLU THR ALA ASP ARG LYS SER CYS TYR VAL SER VAL SEQRES 6 B 257 CYS GLY GLN GLU SER TRP GLN LYS PRO TRP ARG ASP ARG SEQRES 7 B 257 ILE THR ILE ALA ILE ALA PRO THR LYS GLN SER GLU ARG SEQRES 8 B 257 MSE GLU TRP MSE LEU GLU LYS LEU VAL GLU ILE GLY VAL SEQRES 9 B 257 ASP GLU VAL VAL PHE ILE GLU SER GLU HIS SER GLU ARG SEQRES 10 B 257 ARG ARG ILE LYS ALA GLU ARG LEU GLU ARG ILE ALA ILE SEQRES 11 B 257 SER ALA MSE LYS GLN SER LEU LYS ALA SER PHE PRO VAL SEQRES 12 B 257 ILE ARG VAL ASN ILE PRO ILE GLN THR VAL ILE ALA ASP SEQRES 13 B 257 THR PRO LYS ALA ALA VAL ARG LEU ILE ALA TYR VAL ASP SEQRES 14 B 257 GLU ALA VAL ARG ALA GLU ILE THR GLN GLY ARG GLY TYR SEQRES 15 B 257 PRO SER ASP PHE TYR HIS VAL GLY GLN ASP VAL LEU ILE SEQRES 16 B 257 LEU ILE GLY PRO GLU GLY ASP PHE SER PRO SER GLU VAL SEQRES 17 B 257 GLU SER ALA LEU LEU ALA GLY PHE ALA PRO VAL SER LEU SEQRES 18 B 257 GLY GLU SER ARG LEU ARG THR GLU THR ALA GLY LEU VAL SEQRES 19 B 257 ALA CYS GLN TRP ILE HIS THR LEU GLN ALA CYS TYR ARG SEQRES 20 B 257 ILE GLY GLU GLY HIS HIS HIS HIS HIS HIS MODRES 3KW2 MSE A 31 MET SELENOMETHIONINE MODRES 3KW2 MSE A 90 MET SELENOMETHIONINE MODRES 3KW2 MSE A 93 MET SELENOMETHIONINE MODRES 3KW2 MSE A 131 MET SELENOMETHIONINE MODRES 3KW2 MSE B 31 MET SELENOMETHIONINE MODRES 3KW2 MSE B 90 MET SELENOMETHIONINE MODRES 3KW2 MSE B 93 MET SELENOMETHIONINE MODRES 3KW2 MSE B 131 MET SELENOMETHIONINE HET MSE A 31 8 HET MSE A 90 8 HET MSE A 93 8 HET MSE A 131 8 HET MSE B 31 8 HET MSE B 90 16 HET MSE B 93 8 HET MSE B 131 8 HET ADN A 300 19 HET ADN B 300 19 HETNAM MSE SELENOMETHIONINE HETNAM ADN ADENOSINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 ADN 2(C10 H13 N5 O4) FORMUL 5 HOH *136(H2 O) HELIX 1 1 PRO A 18 ARG A 27 1 10 HELIX 2 2 GLN A 86 GLY A 101 1 16 HELIX 3 3 LYS A 119 SER A 134 1 16 HELIX 4 4 ILE A 148 THR A 155 1 8 HELIX 5 5 TYR A 180 PHE A 184 5 5 HELIX 6 6 SER A 202 GLY A 213 1 12 HELIX 7 7 ARG A 225 TYR A 244 1 20 HELIX 8 8 PRO B 18 ARG B 27 1 10 HELIX 9 9 GLN B 86 GLY B 101 1 16 HELIX 10 10 LYS B 119 SER B 134 1 16 HELIX 11 11 ILE B 148 THR B 155 1 8 HELIX 12 12 TYR B 180 PHE B 184 5 5 HELIX 13 13 SER B 202 GLY B 213 1 12 HELIX 14 14 ARG B 225 TYR B 244 1 20 SHEET 1 A 4 LEU A 5 TYR A 7 0 SHEET 2 A 4 ARG A 36 THR A 40 1 O ARG A 38 N PHE A 6 SHEET 3 A 4 SER A 45 ALA A 54 -1 O ALA A 49 N LEU A 37 SHEET 4 A 4 CYS A 59 SER A 68 -1 O GLU A 67 N PHE A 46 SHEET 1 B 6 VAL A 141 PRO A 147 0 SHEET 2 B 6 GLU A 104 GLU A 109 1 N PHE A 107 O ARG A 143 SHEET 3 B 6 ILE A 77 ILE A 81 1 N ILE A 81 O VAL A 106 SHEET 4 B 6 VAL A 191 ILE A 195 1 O ILE A 193 N ALA A 80 SHEET 5 B 6 VAL A 160 ALA A 164 1 N LEU A 162 O LEU A 192 SHEET 6 B 6 ALA A 215 VAL A 217 1 O ALA A 215 N ILE A 163 SHEET 1 C 4 LEU B 5 TYR B 7 0 SHEET 2 C 4 ARG B 36 THR B 40 1 O ARG B 38 N PHE B 6 SHEET 3 C 4 SER B 45 ALA B 54 -1 O ALA B 49 N LEU B 37 SHEET 4 C 4 CYS B 59 SER B 68 -1 O TYR B 60 N GLU B 52 SHEET 1 D 6 VAL B 141 PRO B 147 0 SHEET 2 D 6 GLU B 104 GLU B 109 1 N PHE B 107 O ARG B 143 SHEET 3 D 6 ILE B 77 ILE B 81 1 N ILE B 81 O VAL B 106 SHEET 4 D 6 VAL B 191 ILE B 195 1 O ILE B 195 N ALA B 80 SHEET 5 D 6 VAL B 160 ALA B 164 1 N LEU B 162 O LEU B 194 SHEET 6 D 6 ALA B 215 VAL B 217 1 O ALA B 215 N ARG B 161 LINK C ARG A 30 N MSE A 31 1555 1555 1.33 LINK C MSE A 31 N GLN A 32 1555 1555 1.33 LINK C ARG A 89 N MSE A 90 1555 1555 1.34 LINK C MSE A 90 N GLU A 91 1555 1555 1.33 LINK C TRP A 92 N MSE A 93 1555 1555 1.33 LINK C MSE A 93 N LEU A 94 1555 1555 1.32 LINK C ALA A 130 N MSE A 131 1555 1555 1.33 LINK C MSE A 131 N LYS A 132 1555 1555 1.32 LINK C ARG B 30 N MSE B 31 1555 1555 1.33 LINK C MSE B 31 N GLN B 32 1555 1555 1.33 LINK C ARG B 89 N AMSE B 90 1555 1555 1.33 LINK C ARG B 89 N BMSE B 90 1555 1555 1.33 LINK C AMSE B 90 N GLU B 91 1555 1555 1.33 LINK C BMSE B 90 N GLU B 91 1555 1555 1.33 LINK C TRP B 92 N MSE B 93 1555 1555 1.33 LINK C MSE B 93 N LEU B 94 1555 1555 1.32 LINK C ALA B 130 N MSE B 131 1555 1555 1.33 LINK C MSE B 131 N LYS B 132 1555 1555 1.34 SITE 1 AC1 15 ALA A 164 TYR A 165 VAL A 166 ARG A 178 SITE 2 AC1 15 ILE A 195 GLY A 196 PRO A 197 ASP A 200 SITE 3 AC1 15 SER A 218 LEU A 219 GLY A 220 SER A 222 SITE 4 AC1 15 LEU A 224 THR A 226 ALA A 229 SITE 1 AC2 14 ALA B 164 TYR B 165 ARG B 178 ILE B 195 SITE 2 AC2 14 GLY B 196 PRO B 197 ASP B 200 VAL B 217 SITE 3 AC2 14 SER B 218 LEU B 219 GLY B 220 LEU B 224 SITE 4 AC2 14 THR B 226 ALA B 229 CRYST1 40.565 100.860 119.634 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024652 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009915 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008359 0.00000