HEADER ISOMERASE 30-NOV-09 3KW3 TITLE CRYSTAL STRUCTURE OF ALANINE RACEMASE FROM BARTONELLA HENSELAE WITH TITLE 2 COVALENTLY BOUND PYRIDOXAL PHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 5.1.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA HENSELAE; SOURCE 3 ORGANISM_COMMON: ROCHALIMAEA HENSELAE; SOURCE 4 ORGANISM_TAXID: 38323; SOURCE 5 GENE: ALR, BH12810; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS NIAID, SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS KEYWDS 2 DISEASE, IODIDE SOAK, ALANINE RACEMASE, LLP, CAT-SCRATCH DISEASE, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 22-NOV-23 3KW3 1 REMARK REVDAT 5 06-SEP-23 3KW3 1 SEQADV LINK REVDAT 4 20-SEP-17 3KW3 1 REMARK REVDAT 3 20-JUL-11 3KW3 1 JRNL REVDAT 2 13-JUL-11 3KW3 1 VERSN JRNL REVDAT 1 22-DEC-09 3KW3 0 JRNL AUTH J.ABENDROTH,A.S.GARDBERG,J.I.ROBINSON,J.S.CHRISTENSEN, JRNL AUTH 2 B.L.STAKER,P.J.MYLER,L.J.STEWART,T.E.EDWARDS JRNL TITL SAD PHASING USING IODIDE IONS IN A HIGH-THROUGHPUT JRNL TITL 2 STRUCTURAL GENOMICS ENVIRONMENT. JRNL REF J.STRUCT.FUNCT.GENOM. V. 12 83 2011 JRNL REFN ISSN 1345-711X JRNL PMID 21359836 JRNL DOI 10.1007/S10969-011-9101-7 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 45875 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2318 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.04 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.2580 REMARK 3 BIN FREE R VALUE SET COUNT : 148 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5407 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 426 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.82000 REMARK 3 B22 (A**2) : -1.01000 REMARK 3 B33 (A**2) : 0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.88000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.904 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5574 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7598 ; 1.408 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 710 ; 6.391 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 220 ;37.335 ;24.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 914 ;15.135 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;16.392 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 876 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4166 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3526 ; 0.664 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5695 ; 1.167 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2048 ; 1.954 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1898 ; 3.061 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 372 REMARK 3 RESIDUE RANGE : A 373 A 569 REMARK 3 ORIGIN FOR THE GROUP (A): 60.5882 50.4368 34.2100 REMARK 3 T TENSOR REMARK 3 T11: 0.0483 T22: 0.0587 REMARK 3 T33: 0.0833 T12: -0.0263 REMARK 3 T13: 0.0176 T23: 0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.2089 L22: 0.5683 REMARK 3 L33: 1.1781 L12: -0.1464 REMARK 3 L13: 0.6519 L23: -0.2975 REMARK 3 S TENSOR REMARK 3 S11: -0.0629 S12: 0.1010 S13: 0.1888 REMARK 3 S21: 0.0179 S22: -0.0742 S23: -0.0849 REMARK 3 S31: -0.1672 S32: 0.2235 S33: 0.1371 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 14 B 372 REMARK 3 RESIDUE RANGE : B 373 B 601 REMARK 3 ORIGIN FOR THE GROUP (A): 43.7773 30.1931 24.4218 REMARK 3 T TENSOR REMARK 3 T11: 0.0646 T22: 0.0135 REMARK 3 T33: 0.0662 T12: 0.0008 REMARK 3 T13: 0.0060 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 0.6745 L22: 0.6478 REMARK 3 L33: 1.4131 L12: 0.0831 REMARK 3 L13: 0.6250 L23: 0.1110 REMARK 3 S TENSOR REMARK 3 S11: 0.0522 S12: -0.0086 S13: -0.0700 REMARK 3 S21: -0.1067 S22: 0.0357 S23: 0.1005 REMARK 3 S31: 0.1355 S32: -0.0207 S33: -0.0880 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS; U VALUES: RESIDUAL ONLY REMARK 4 REMARK 4 3KW3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-09; 16-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : ALS; ROTATING ANODE REMARK 200 BEAMLINE : 5.0.3; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976484; 1.5418 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; RIGAKU SATURN REMARK 200 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45971 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD, MR REMARK 200 SOFTWARE USED: PHASER, SHELX, SHELXD REMARK 200 STARTING MODEL: 2DY3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NATIVE CRYSTAL GROWN IN 0.1 M HEPES PH REMARK 280 8.0, 33% PEG 3350 AT 42.3 MG/ML, CRYSTAL TRACKING ID 203636D11; REMARK 280 CRYSTAL USED FOR COMBINED PHASER MR/IODOSAD GROWN IN 0.1 M HEPES REMARK 280 PH 8.5, 0.2 M MGCL2, 25% PEG 3350 AND SOAKED FOR 1 HOUR IN 0.1 M REMARK 280 HEPES PH 8.0, 1.0 M KI, 35% PEG 3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.39700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.15800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.39700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.15800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ALA A 5 REMARK 465 LYS A 6 REMARK 465 ASP A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 ASN A 10 REMARK 465 PRO A 11 REMARK 465 LEU A 12 REMARK 465 ASP A 261 REMARK 465 ALA A 262 REMARK 465 GLY A 263 REMARK 465 ILE A 264 REMARK 465 PRO A 265 REMARK 465 VAL A 266 REMARK 465 GLY A 267 REMARK 465 TYR A 268 REMARK 465 ARG A 269 REMARK 465 GLU A 270 REMARK 465 SER A 271 REMARK 465 PHE A 272 REMARK 465 MET A 273 REMARK 465 THR A 274 REMARK 465 ARG A 275 REMARK 465 ARG A 276 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 LYS B 3 REMARK 465 SER B 4 REMARK 465 ALA B 5 REMARK 465 LYS B 6 REMARK 465 ASP B 7 REMARK 465 THR B 8 REMARK 465 ALA B 9 REMARK 465 ASN B 10 REMARK 465 PRO B 11 REMARK 465 LEU B 12 REMARK 465 PHE B 13 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 80 CG CD OE1 NE2 REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 LYS A 100 CG CD CE NZ REMARK 470 GLN A 107 CG CD OE1 NE2 REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 PHE A 259 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE A 260 CG1 CG2 CD1 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 328 CG CD CE NZ REMARK 470 LYS A 365 CG CD CE NZ REMARK 470 GLN B 64 CG CD OE1 NE2 REMARK 470 GLU B 76 CG CD OE1 OE2 REMARK 470 GLU B 87 CG CD OE1 OE2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 GLN B 155 CG CD OE1 NE2 REMARK 470 LYS B 159 CG CD CE NZ REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 LYS B 189 CG CD CE NZ REMARK 470 ARG B 196 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 LYS B 328 CG CD CE NZ REMARK 470 LYS B 365 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 371 O HOH A 548 2.12 REMARK 500 OD2 ASP A 141 O HOH A 425 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 86 -173.25 -67.52 REMARK 500 ASN A 143 -18.03 154.01 REMARK 500 ARG A 146 -74.92 -123.80 REMARK 500 PHE A 208 -37.63 -137.16 REMARK 500 PHE A 222 -128.75 45.88 REMARK 500 LEU A 224 124.64 -171.48 REMARK 500 ASN A 297 19.08 57.83 REMARK 500 LYS A 298 -43.84 -141.99 REMARK 500 ALA B 38 136.70 -38.44 REMARK 500 ASN B 88 47.70 -81.15 REMARK 500 ASN B 143 24.12 -153.69 REMARK 500 HIS B 184 135.66 -35.89 REMARK 500 CYS B 204 147.24 -174.48 REMARK 500 PHE B 208 -42.62 -140.87 REMARK 500 PHE B 222 -125.13 45.85 REMARK 500 SER B 284 45.06 -78.07 REMARK 500 LYS B 298 -44.88 -144.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BAHEA.00339.A RELATED DB: TARGETDB DBREF 3KW3 A 1 372 UNP Q6G2F2 Q6G2F2_BARHE 1 372 DBREF 3KW3 B 1 372 UNP Q6G2F2 Q6G2F2_BARHE 1 372 SEQADV 3KW3 GLY A -3 UNP Q6G2F2 EXPRESSION TAG SEQADV 3KW3 PRO A -2 UNP Q6G2F2 EXPRESSION TAG SEQADV 3KW3 GLY A -1 UNP Q6G2F2 EXPRESSION TAG SEQADV 3KW3 SER A 0 UNP Q6G2F2 EXPRESSION TAG SEQADV 3KW3 GLY B -3 UNP Q6G2F2 EXPRESSION TAG SEQADV 3KW3 PRO B -2 UNP Q6G2F2 EXPRESSION TAG SEQADV 3KW3 GLY B -1 UNP Q6G2F2 EXPRESSION TAG SEQADV 3KW3 SER B 0 UNP Q6G2F2 EXPRESSION TAG SEQRES 1 A 376 GLY PRO GLY SER MET ASN LYS SER ALA LYS ASP THR ALA SEQRES 2 A 376 ASN PRO LEU PHE PRO ALA THR ALA ILE ALA THR ILE ASP SEQRES 3 A 376 VAL ARG ALA ILE VAL ALA ASN TYR ARG THR LEU ALA GLN SEQRES 4 A 376 HIS VAL ALA PRO THR GLU CYS SER ALA VAL VAL LLP ALA SEQRES 5 A 376 ASN ALA TYR GLY LEU GLY ALA HIS LYS ILE ALA PRO ALA SEQRES 6 A 376 LEU TYR GLN ALA GLY CYS ARG THR PHE PHE VAL ALA GLN SEQRES 7 A 376 ILE GLU GLU ALA LEU GLN LEU LYS ALA VAL LEU PRO GLU SEQRES 8 A 376 ASN VAL MET ILE ALA LEU LEU ASN GLY PHE PRO HIS LYS SEQRES 9 A 376 ALA GLU GLU PHE VAL ALA GLN SER GLY ILE ILE PRO LEU SEQRES 10 A 376 LEU ASN SER TRP SER THR ILE GLU ASP TRP GLN THR LEU SEQRES 11 A 376 CYS GLN LYS LYS ASN LYS LYS PHE PRO ALA ILE ILE GLN SEQRES 12 A 376 VAL ASP THR ASN MET SER ARG LEU GLY LEU ASP LYS LYS SEQRES 13 A 376 GLU LEU GLN LYS LEU ILE LYS ASN PRO THR ILE PHE GLU SEQRES 14 A 376 LYS ALA GLU ILE LYS TYR ILE LEU SER HIS LEU ALA ASN SEQRES 15 A 376 GLY GLU ASP ALA SER HIS SER SER ASN ASN LYS GLN LEU SEQRES 16 A 376 ALA ALA PHE LYS ARG VAL LEU ALA GLN LEU PRO THR CYS SEQRES 17 A 376 LYS VAL SER PHE ALA ASN SER GLY GLY ILE PHE LEU GLY SEQRES 18 A 376 SER ASP PHE TYR PHE ASP LEU VAL ARG PRO GLY ILE ALA SEQRES 19 A 376 LEU TYR GLY VAL ASP PRO HIS GLY LYS HIS PRO THR PRO SEQRES 20 A 376 LEU LYS ALA VAL VAL LYS VAL GLU ALA GLN VAL LEU GLN SEQRES 21 A 376 SER ARG PHE ILE ASP ALA GLY ILE PRO VAL GLY TYR ARG SEQRES 22 A 376 GLU SER PHE MET THR ARG ARG PRO SER THR LEU ALA THR SEQRES 23 A 376 ILE SER ILE GLY TYR ALA ASP GLY TRP PRO ARG ILE LEU SEQRES 24 A 376 SER ASN LYS GLY THR VAL TYR PHE ASN GLY HIS LYS LEU SEQRES 25 A 376 PRO ILE VAL GLY HIS ILE SER MET ASP SER ILE ILE VAL SEQRES 26 A 376 ASP ALA THR ASP LEU ASP LYS LYS PRO GLN ARG GLY ASP SEQRES 27 A 376 TRP VAL GLU LEU ILE GLY PRO HIS GLN PRO LEU GLU LYS SEQRES 28 A 376 VAL SER THR ASP THR ASN THR ILE PRO HIS GLU ILE LEU SEQRES 29 A 376 THR SER LEU GLY LYS ARG TYR LYS ARG ILE TYR ILE SEQRES 1 B 376 GLY PRO GLY SER MET ASN LYS SER ALA LYS ASP THR ALA SEQRES 2 B 376 ASN PRO LEU PHE PRO ALA THR ALA ILE ALA THR ILE ASP SEQRES 3 B 376 VAL ARG ALA ILE VAL ALA ASN TYR ARG THR LEU ALA GLN SEQRES 4 B 376 HIS VAL ALA PRO THR GLU CYS SER ALA VAL VAL LLP ALA SEQRES 5 B 376 ASN ALA TYR GLY LEU GLY ALA HIS LYS ILE ALA PRO ALA SEQRES 6 B 376 LEU TYR GLN ALA GLY CYS ARG THR PHE PHE VAL ALA GLN SEQRES 7 B 376 ILE GLU GLU ALA LEU GLN LEU LYS ALA VAL LEU PRO GLU SEQRES 8 B 376 ASN VAL MET ILE ALA LEU LEU ASN GLY PHE PRO HIS LYS SEQRES 9 B 376 ALA GLU GLU PHE VAL ALA GLN SER GLY ILE ILE PRO LEU SEQRES 10 B 376 LEU ASN SER TRP SER THR ILE GLU ASP TRP GLN THR LEU SEQRES 11 B 376 CYS GLN LYS LYS ASN LYS LYS PHE PRO ALA ILE ILE GLN SEQRES 12 B 376 VAL ASP THR ASN MET SER ARG LEU GLY LEU ASP LYS LYS SEQRES 13 B 376 GLU LEU GLN LYS LEU ILE LYS ASN PRO THR ILE PHE GLU SEQRES 14 B 376 LYS ALA GLU ILE LYS TYR ILE LEU SER HIS LEU ALA ASN SEQRES 15 B 376 GLY GLU ASP ALA SER HIS SER SER ASN ASN LYS GLN LEU SEQRES 16 B 376 ALA ALA PHE LYS ARG VAL LEU ALA GLN LEU PRO THR CYS SEQRES 17 B 376 LYS VAL SER PHE ALA ASN SER GLY GLY ILE PHE LEU GLY SEQRES 18 B 376 SER ASP PHE TYR PHE ASP LEU VAL ARG PRO GLY ILE ALA SEQRES 19 B 376 LEU TYR GLY VAL ASP PRO HIS GLY LYS HIS PRO THR PRO SEQRES 20 B 376 LEU LYS ALA VAL VAL LYS VAL GLU ALA GLN VAL LEU GLN SEQRES 21 B 376 SER ARG PHE ILE ASP ALA GLY ILE PRO VAL GLY TYR ARG SEQRES 22 B 376 GLU SER PHE MET THR ARG ARG PRO SER THR LEU ALA THR SEQRES 23 B 376 ILE SER ILE GLY TYR ALA ASP GLY TRP PRO ARG ILE LEU SEQRES 24 B 376 SER ASN LYS GLY THR VAL TYR PHE ASN GLY HIS LYS LEU SEQRES 25 B 376 PRO ILE VAL GLY HIS ILE SER MET ASP SER ILE ILE VAL SEQRES 26 B 376 ASP ALA THR ASP LEU ASP LYS LYS PRO GLN ARG GLY ASP SEQRES 27 B 376 TRP VAL GLU LEU ILE GLY PRO HIS GLN PRO LEU GLU LYS SEQRES 28 B 376 VAL SER THR ASP THR ASN THR ILE PRO HIS GLU ILE LEU SEQRES 29 B 376 THR SER LEU GLY LYS ARG TYR LYS ARG ILE TYR ILE MODRES 3KW3 LLP A 47 LYS MODRES 3KW3 LLP B 47 LYS HET LLP A 47 24 HET LLP B 47 24 HETNAM LLP (2S)-2-AMINO-6-[[3-HYDROXY-2-METHYL-5- HETNAM 2 LLP (PHOSPHONOOXYMETHYL)PYRIDIN-4- HETNAM 3 LLP YL]METHYLIDENEAMINO]HEXANOIC ACID HETSYN LLP N'-PYRIDOXYL-LYSINE-5'-MONOPHOSPHATE FORMUL 1 LLP 2(C14 H22 N3 O7 P) FORMUL 3 HOH *426(H2 O) HELIX 1 1 VAL A 23 ALA A 38 1 16 HELIX 2 2 VAL A 46 GLY A 52 1 7 HELIX 3 3 GLY A 54 ALA A 65 1 12 HELIX 4 4 GLN A 74 LEU A 85 1 12 HELIX 5 5 ALA A 101 SER A 108 1 8 HELIX 6 6 SER A 116 ASN A 131 1 16 HELIX 7 7 ASP A 150 ASN A 160 1 11 HELIX 8 8 THR A 162 ALA A 167 1 6 HELIX 9 9 SER A 185 ALA A 199 1 15 HELIX 10 10 ASN A 210 PHE A 215 1 6 HELIX 11 11 LEU A 216 TYR A 221 5 6 HELIX 12 12 GLY A 228 GLY A 233 5 6 HELIX 13 13 GLY A 286 GLY A 290 5 5 HELIX 14 14 PRO A 292 SER A 296 5 5 HELIX 15 15 PRO A 344 ASN A 353 1 10 HELIX 16 16 ILE A 355 SER A 362 1 8 HELIX 17 17 VAL B 23 ALA B 38 1 16 HELIX 18 18 VAL B 46 GLY B 52 1 7 HELIX 19 19 GLY B 54 ALA B 65 1 12 HELIX 20 20 GLN B 74 LEU B 85 1 12 HELIX 21 21 ALA B 101 SER B 108 1 8 HELIX 22 22 SER B 116 ASN B 131 1 16 HELIX 23 23 ASP B 150 ASN B 160 1 11 HELIX 24 24 THR B 162 ALA B 167 1 6 HELIX 25 25 SER B 185 GLN B 200 1 16 HELIX 26 26 ASN B 210 PHE B 215 1 6 HELIX 27 27 LEU B 216 TYR B 221 5 6 HELIX 28 28 GLY B 228 GLY B 233 5 6 HELIX 29 29 GLY B 267 SER B 271 5 5 HELIX 30 30 GLY B 286 GLY B 290 5 5 HELIX 31 31 PRO B 292 SER B 296 5 5 HELIX 32 32 PRO B 344 ASN B 353 1 10 HELIX 33 33 ILE B 355 SER B 362 1 8 SHEET 1 A 4 ILE A 319 ASP A 322 0 SHEET 2 A 4 THR A 279 ILE A 283 -1 N ALA A 281 O VAL A 321 SHEET 3 A 4 VAL A 248 PHE A 259 -1 N LEU A 255 O THR A 282 SHEET 4 A 4 TRP A 335 ILE A 339 -1 O LEU A 338 N VAL A 250 SHEET 1 B 5 ILE A 319 ASP A 322 0 SHEET 2 B 5 THR A 279 ILE A 283 -1 N ALA A 281 O VAL A 321 SHEET 3 B 5 VAL A 248 PHE A 259 -1 N LEU A 255 O THR A 282 SHEET 4 B 5 ALA A 17 ASP A 22 -1 N ILE A 18 O GLU A 251 SHEET 5 B 5 LYS A 368 ILE A 372 1 O ILE A 370 N ILE A 21 SHEET 1 C 2 GLU A 41 CYS A 42 0 SHEET 2 C 2 LEU A 224 VAL A 225 1 O VAL A 225 N GLU A 41 SHEET 1 D 7 ALA A 44 VAL A 45 0 SHEET 2 D 7 THR A 69 VAL A 72 1 O THR A 69 N ALA A 44 SHEET 3 D 7 MET A 90 LEU A 93 1 O MET A 90 N PHE A 70 SHEET 4 D 7 ILE A 111 LEU A 114 1 O ILE A 111 N ILE A 91 SHEET 5 D 7 PRO A 135 GLN A 139 1 O ILE A 137 N LEU A 114 SHEET 6 D 7 GLU A 168 LEU A 173 1 O LEU A 173 N ILE A 138 SHEET 7 D 7 VAL A 206 SER A 207 1 O SER A 207 N ILE A 172 SHEET 1 E 2 THR A 300 PHE A 303 0 SHEET 2 E 2 HIS A 306 PRO A 309 -1 O LEU A 308 N VAL A 301 SHEET 1 F 4 ILE B 319 ASP B 322 0 SHEET 2 F 4 SER B 278 ILE B 283 -1 N ILE B 283 O ILE B 319 SHEET 3 F 4 VAL B 248 ILE B 260 -1 N LEU B 255 O THR B 282 SHEET 4 F 4 TRP B 335 ILE B 339 -1 O LEU B 338 N VAL B 250 SHEET 1 G 5 ILE B 319 ASP B 322 0 SHEET 2 G 5 SER B 278 ILE B 283 -1 N ILE B 283 O ILE B 319 SHEET 3 G 5 VAL B 248 ILE B 260 -1 N LEU B 255 O THR B 282 SHEET 4 G 5 ALA B 17 ASP B 22 -1 N THR B 20 O LYS B 249 SHEET 5 G 5 LYS B 368 ILE B 372 1 O ILE B 370 N ILE B 21 SHEET 1 H 2 GLU B 41 CYS B 42 0 SHEET 2 H 2 LEU B 224 VAL B 225 1 O VAL B 225 N GLU B 41 SHEET 1 I 7 ALA B 44 VAL B 45 0 SHEET 2 I 7 THR B 69 VAL B 72 1 O PHE B 71 N ALA B 44 SHEET 3 I 7 MET B 90 LEU B 93 1 O ALA B 92 N PHE B 70 SHEET 4 I 7 ILE B 111 LEU B 114 1 O ILE B 111 N LEU B 93 SHEET 5 I 7 PRO B 135 GLN B 139 1 O ILE B 137 N LEU B 114 SHEET 6 I 7 GLU B 168 LEU B 173 1 O LEU B 173 N ILE B 138 SHEET 7 I 7 VAL B 206 SER B 207 1 O SER B 207 N ILE B 172 SHEET 1 J 2 PRO B 265 VAL B 266 0 SHEET 2 J 2 PHE B 272 MET B 273 -1 O PHE B 272 N VAL B 266 SHEET 1 K 2 THR B 300 PHE B 303 0 SHEET 2 K 2 HIS B 306 PRO B 309 -1 O LEU B 308 N VAL B 301 LINK C LLP A 47 N ALA A 48 1555 1555 1.34 LINK C LLP B 47 N ALA B 48 1555 1555 1.32 CISPEP 1 ALA A 38 PRO A 39 0 5.51 CISPEP 2 HIS A 240 PRO A 241 0 0.73 CISPEP 3 ALA B 38 PRO B 39 0 4.01 CISPEP 4 HIS B 240 PRO B 241 0 10.96 CRYST1 136.794 54.316 107.476 90.00 112.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007310 0.000000 0.003011 0.00000 SCALE2 0.000000 0.018411 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010063 0.00000