HEADER TRANSFERASE 01-DEC-09 3KWP TITLE CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE FROM LACTOBACILLUS TITLE 2 BREVIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREDICTED METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS BREVIS ATCC 367; SOURCE 3 ORGANISM_TAXID: 387344; SOURCE 4 STRAIN: ATCC 367 / JCM 1170; SOURCE 5 GENE: LVIS_0608; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)DERIVATIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET DERIVATIVE KEYWDS PUTATIVE METHYLTRANSFERASE, LACTOBACILLUS BREVIS, MCSG, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR KEYWDS 3 STRUCTURAL GENOMICS, METHYLTRANSFERASE, S-ADENOSYL-L-METHIONINE, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,X.XU,H.CUI,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 27-NOV-24 3KWP 1 REMARK LINK REVDAT 3 01-NOV-17 3KWP 1 REMARK REVDAT 2 13-JUL-11 3KWP 1 VERSN REVDAT 1 15-DEC-09 3KWP 0 JRNL AUTH C.CHANG,X.XU,H.CUI,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE FROM JRNL TITL 2 LACTOBACILLUS BREVIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 12577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 614 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1740 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 39.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.23000 REMARK 3 B22 (A**2) : -5.29000 REMARK 3 B33 (A**2) : 7.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.227 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1807 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2462 ; 1.606 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 6.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;38.889 ;24.125 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 288 ;17.134 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 280 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1386 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1153 ; 0.735 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1853 ; 1.313 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 654 ; 2.257 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 609 ; 3.535 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2732 38.5098 32.4615 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.0681 REMARK 3 T33: 0.1899 T12: -0.0087 REMARK 3 T13: 0.0269 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 3.0507 L22: 3.4844 REMARK 3 L33: 1.7978 L12: -0.8639 REMARK 3 L13: 0.6663 L23: -1.2512 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: -0.1500 S13: -0.2510 REMARK 3 S21: 0.1288 S22: 0.1530 S23: 0.6080 REMARK 3 S31: 0.0334 S32: 0.0709 S33: -0.1671 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5799 25.8484 14.4111 REMARK 3 T TENSOR REMARK 3 T11: 0.2324 T22: 0.1843 REMARK 3 T33: 0.0945 T12: -0.0018 REMARK 3 T13: 0.0204 T23: -0.0470 REMARK 3 L TENSOR REMARK 3 L11: 3.6460 L22: 5.6990 REMARK 3 L33: 1.8828 L12: -1.0029 REMARK 3 L13: 0.4603 L23: 0.9426 REMARK 3 S TENSOR REMARK 3 S11: 0.0535 S12: 0.4193 S13: -0.5079 REMARK 3 S21: -0.6116 S22: -0.0460 S23: 0.3447 REMARK 3 S31: -0.0313 S32: 0.1386 S33: -0.0075 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KWP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056541. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUL-09; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 19-BM; 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97942; 0.97972 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12839 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2M MGCL2, 25% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 32.13750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.60300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.13750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.60300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER WITH VECTOR (X,Y,Z) AND (-X,-Y+1,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 79.20600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 GLU A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 ARG A 5 REMARK 465 SER A 6 REMARK 465 PHE A 7 REMARK 465 GLN A 8 REMARK 465 THR A 9 REMARK 465 GLU A 10 REMARK 465 THR A 239 REMARK 465 ALA A 240 REMARK 465 ALA A 241 REMARK 465 THR A 242 REMARK 465 THR A 243 REMARK 465 ALA A 244 REMARK 465 VAL A 245 REMARK 465 ASP A 246 REMARK 465 LEU A 247 REMARK 465 SER A 248 REMARK 465 GLU A 249 REMARK 465 PRO A 250 REMARK 465 ILE A 251 REMARK 465 ASP A 252 REMARK 465 VAL A 253 REMARK 465 GLN A 254 REMARK 465 VAL A 255 REMARK 465 ASP A 256 REMARK 465 ARG A 257 REMARK 465 LEU A 258 REMARK 465 ILE A 259 REMARK 465 ALA A 260 REMARK 465 ALA A 261 REMARK 465 GLY A 262 REMARK 465 GLU A 263 REMARK 465 LYS A 264 REMARK 465 PRO A 265 REMARK 465 ASN A 266 REMARK 465 ASP A 267 REMARK 465 ALA A 268 REMARK 465 ILE A 269 REMARK 465 LYS A 270 REMARK 465 GLU A 271 REMARK 465 VAL A 272 REMARK 465 ALA A 273 REMARK 465 LYS A 274 REMARK 465 LEU A 275 REMARK 465 ARG A 276 REMARK 465 GLY A 277 REMARK 465 ALA A 278 REMARK 465 LYS A 279 REMARK 465 LYS A 280 REMARK 465 GLN A 281 REMARK 465 GLU A 282 REMARK 465 ILE A 283 REMARK 465 TYR A 284 REMARK 465 ARG A 285 REMARK 465 GLN A 286 REMARK 465 TYR A 287 REMARK 465 HIS A 288 REMARK 465 HIS A 289 REMARK 465 LEU A 290 REMARK 465 ASP A 291 REMARK 465 GLU A 292 REMARK 465 GLU A 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 148 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 149 CG CD CE NZ REMARK 470 PRO A 150 CG CD REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 THR A 238 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 346 O HOH A 356 4556 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 200 0.57 81.09 REMARK 500 THR A 222 104.98 -42.28 REMARK 500 ALA A 236 75.85 -156.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC64793 RELATED DB: TARGETDB DBREF 3KWP A 1 293 UNP Q03SR9 Q03SR9_LACBA 1 293 SEQADV 3KWP GLN A -2 UNP Q03SR9 EXPRESSION TAG SEQADV 3KWP GLY A -1 UNP Q03SR9 EXPRESSION TAG SEQADV 3KWP HIS A 0 UNP Q03SR9 EXPRESSION TAG SEQRES 1 A 296 GLN GLY HIS MSE GLU GLN GLN ARG SER PHE GLN THR GLU SEQRES 2 A 296 THR GLY GLY HIS LEU TYR LEU VAL PRO THR PRO ILE GLY SEQRES 3 A 296 ASN LEU ASP ASP MSE THR PHE ARG ALA VAL LYS THR LEU SEQRES 4 A 296 THR ALA VAL ASP LEU ILE ALA ALA GLU ASP THR ARG ASN SEQRES 5 A 296 THR GLN LYS LEU LEU ASN HIS PHE GLU ILE THR THR LYS SEQRES 6 A 296 GLN ILE SER PHE HIS GLU HIS ASN THR GLN GLU ARG ILE SEQRES 7 A 296 PRO GLN LEU ILE ALA LYS LEU LYS GLN GLY MSE GLN ILE SEQRES 8 A 296 ALA GLN VAL SER ASP ALA GLY MSE PRO SER ILE SER ASP SEQRES 9 A 296 PRO GLY HIS GLU LEU VAL ASN ALA CYS ILE ASP ALA HIS SEQRES 10 A 296 ILE PRO VAL VAL PRO LEU PRO GLY ALA ASN ALA GLY LEU SEQRES 11 A 296 THR ALA LEU ILE ALA SER GLY LEU ALA PRO GLN PRO PHE SEQRES 12 A 296 TYR PHE TYR GLY PHE LEU ASP ARG LYS PRO LYS ASP ARG SEQRES 13 A 296 LYS ALA GLU ILE ALA GLY LEU ALA GLN ARG PRO GLU THR SEQRES 14 A 296 LEU ILE PHE TYR GLU ALA PRO HIS ARG LEU LYS LYS THR SEQRES 15 A 296 LEU GLN ASN LEU ALA ALA GLY PHE GLY ASP GLU ARG PRO SEQRES 16 A 296 ALA VAL LEU CYS ARG GLU LEU THR LYS ARG TYR GLU GLU SEQRES 17 A 296 PHE LEU ARG GLY SER LEU ALA GLU LEU ALA ASN TRP ALA SEQRES 18 A 296 ALA THR ASP THR VAL ARG GLY GLU PHE VAL VAL LEU VAL SEQRES 19 A 296 GLY GLY ASN PRO ALA PRO THR THR ALA ALA THR THR ALA SEQRES 20 A 296 VAL ASP LEU SER GLU PRO ILE ASP VAL GLN VAL ASP ARG SEQRES 21 A 296 LEU ILE ALA ALA GLY GLU LYS PRO ASN ASP ALA ILE LYS SEQRES 22 A 296 GLU VAL ALA LYS LEU ARG GLY ALA LYS LYS GLN GLU ILE SEQRES 23 A 296 TYR ARG GLN TYR HIS HIS LEU ASP GLU GLU MODRES 3KWP MSE A 28 MET SELENOMETHIONINE MODRES 3KWP MSE A 86 MET SELENOMETHIONINE MODRES 3KWP MSE A 96 MET SELENOMETHIONINE HET MSE A 28 8 HET MSE A 86 8 HET MSE A 96 8 HET TRS A 301 8 HETNAM MSE SELENOMETHIONINE HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETSYN TRS TRIS BUFFER FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 TRS C4 H12 N O3 1+ FORMUL 3 HOH *80(H2 O) HELIX 1 1 ASN A 24 MSE A 28 5 5 HELIX 2 2 THR A 29 VAL A 39 1 11 HELIX 3 3 ASP A 46 PHE A 57 1 12 HELIX 4 4 ASN A 70 GLN A 84 1 15 HELIX 5 5 SER A 100 ALA A 113 1 14 HELIX 6 6 ASN A 124 GLY A 134 1 11 HELIX 7 7 LYS A 149 GLY A 159 1 11 HELIX 8 8 ALA A 172 HIS A 174 5 3 HELIX 9 9 ARG A 175 GLY A 188 1 14 HELIX 10 10 LEU A 211 ASP A 221 1 11 SHEET 1 A 5 LYS A 62 SER A 65 0 SHEET 2 A 5 LEU A 41 ALA A 44 1 N ILE A 42 O ILE A 64 SHEET 3 A 5 GLN A 87 VAL A 91 1 O ALA A 89 N ALA A 43 SHEET 4 A 5 HIS A 14 LEU A 17 1 N TYR A 16 O ILE A 88 SHEET 5 A 5 VAL A 117 PRO A 119 1 O VAL A 118 N LEU A 15 SHEET 1 B 5 PHE A 140 PHE A 145 0 SHEET 2 B 5 THR A 166 GLU A 171 1 O ILE A 168 N TYR A 143 SHEET 3 B 5 PHE A 227 VAL A 231 -1 O VAL A 229 N PHE A 169 SHEET 4 B 5 PRO A 192 ARG A 197 -1 N VAL A 194 O LEU A 230 SHEET 5 B 5 GLU A 205 SER A 210 -1 O GLU A 205 N ARG A 197 LINK C MSE A 28 N THR A 29 1555 1555 1.34 LINK C MSE A 86 N GLN A 87 1555 1555 1.33 LINK C MSE A 96 N PRO A 97 1555 1555 1.36 CISPEP 1 GLN A 138 PRO A 139 0 -8.96 SITE 1 AC1 5 GLN A 181 ALA A 185 ASP A 189 HOH A 347 SITE 2 AC1 5 HOH A 362 CRYST1 64.275 79.206 54.132 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015558 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018473 0.00000 CONECT 126 127 CONECT 127 126 128 130 CONECT 128 127 129 134 CONECT 129 128 CONECT 130 127 131 CONECT 131 130 132 CONECT 132 131 133 CONECT 133 132 CONECT 134 128 CONECT 607 608 CONECT 608 607 609 611 CONECT 609 608 610 615 CONECT 610 609 CONECT 611 608 612 CONECT 612 611 613 CONECT 613 612 614 CONECT 614 613 CONECT 615 609 CONECT 676 677 CONECT 677 676 678 680 CONECT 678 677 679 684 CONECT 679 678 CONECT 680 677 681 CONECT 681 680 682 CONECT 682 681 683 CONECT 683 682 CONECT 684 678 CONECT 1762 1763 1764 1765 1766 CONECT 1763 1762 1767 CONECT 1764 1762 1768 CONECT 1765 1762 1769 CONECT 1766 1762 CONECT 1767 1763 CONECT 1768 1764 CONECT 1769 1765 MASTER 433 0 4 10 10 0 2 6 1828 1 35 23 END