HEADER ISOMERASE 03-DEC-09 3KXQ TITLE CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM BARTONELLA TITLE 2 HENSELAE AT 1.6A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIOSEPHOSPHATE ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TIM, TRIOSE-PHOSPHATE ISOMERASE; COMPND 5 EC: 5.3.1.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA HENSELAE; SOURCE 3 ORGANISM_COMMON: ROCHALIMAEA HENSELAE; SOURCE 4 ORGANISM_TAXID: 38323; SOURCE 5 STRAIN: HOUSTON-1; SOURCE 6 GENE: TPIA, BH05680; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, NIH, NIAID, SBRI, UW, TRIOSEPHOSPHATE ISOMERASE, KEYWDS 2 GLUCONEOGENESIS, GLYCOLYSIS, PENTOSE SHUNT, STRUCTURAL GENOMICS, KEYWDS 3 SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 06-SEP-23 3KXQ 1 REMARK SEQADV REVDAT 2 13-JUL-11 3KXQ 1 VERSN REVDAT 1 22-DEC-09 3KXQ 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,T.E.EDWARDS,B.STAKER JRNL TITL CRYSTAL STRUCTURE OF TRIOSEPHOSPHATE ISOMERASE FROM JRNL TITL 2 BARTONELLA HENSELAE AT 1.6A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0104 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 67842 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3432 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4337 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.1750 REMARK 3 BIN FREE R VALUE SET COUNT : 254 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3525 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 591 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 20.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : 0.24000 REMARK 3 B33 (A**2) : 0.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.90000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.976 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3710 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2456 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5039 ; 1.519 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5993 ; 0.934 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 499 ; 5.366 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 154 ;32.029 ;23.442 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 593 ;11.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;14.104 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 578 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4220 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 770 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2382 ; 0.999 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 998 ; 0.295 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3778 ; 1.630 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1328 ; 2.373 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1245 ; 3.826 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 253 REMARK 3 RESIDUE RANGE : A 300 A 310 REMARK 3 RESIDUE RANGE : A 255 A 590 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9200 23.3630 36.8060 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.0178 REMARK 3 T33: 0.0613 T12: -0.0040 REMARK 3 T13: 0.0121 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.9475 L22: 0.5003 REMARK 3 L33: 0.2527 L12: 0.2737 REMARK 3 L13: 0.0502 L23: 0.1152 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: 0.0580 S13: -0.1516 REMARK 3 S21: -0.0067 S22: 0.0194 S23: -0.0197 REMARK 3 S31: -0.0032 S32: -0.0148 S33: -0.0092 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 253 REMARK 3 RESIDUE RANGE : B 301 B 310 REMARK 3 RESIDUE RANGE : B 255 B 592 REMARK 3 ORIGIN FOR THE GROUP (A): 17.9990 51.8870 50.5800 REMARK 3 T TENSOR REMARK 3 T11: 0.0318 T22: 0.0072 REMARK 3 T33: 0.0201 T12: -0.0091 REMARK 3 T13: 0.0221 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 0.3707 L22: 0.5124 REMARK 3 L33: 0.9262 L12: 0.0339 REMARK 3 L13: -0.2460 L23: 0.1954 REMARK 3 S TENSOR REMARK 3 S11: 0.0342 S12: -0.0137 S13: 0.0093 REMARK 3 S21: -0.0061 S22: 0.0201 S23: 0.0034 REMARK 3 S31: -0.1223 S32: 0.0182 S33: -0.0543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3KXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056578. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979464 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; SINGLE REMARK 200 CRYSTAL (SI111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67886 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.33300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1B9B MODIFIED WITH CCP4 PROGRAM CHAINSAW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: JCSG+ SCREEN #12: 20% PEG 3350, 200MM REMARK 280 NA NITRATE, BAHEA.01246.A AT 21.8MG/ML, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 70.52500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 PRO A 3 REMARK 465 ASN A 4 REMARK 465 SER A 34 REMARK 465 ASP A 35 REMARK 465 LEU A 36 REMARK 465 GLY A 37 REMARK 465 ALA A 173 REMARK 465 VAL A 174 REMARK 465 GLY A 175 REMARK 465 THR A 176 REMARK 465 GLY A 177 REMARK 465 ASN A 178 REMARK 465 THR A 179 REMARK 465 ALA A 180 REMARK 465 LEU A 254 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 PRO B 3 REMARK 465 ASN B 4 REMARK 465 SER B 34 REMARK 465 ASP B 35 REMARK 465 LEU B 36 REMARK 465 GLY B 37 REMARK 465 ARG B 38 REMARK 465 LEU B 39 REMARK 465 VAL B 174 REMARK 465 GLY B 175 REMARK 465 THR B 176 REMARK 465 GLY B 177 REMARK 465 ASN B 178 REMARK 465 THR B 179 REMARK 465 LEU B 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 39 CG CD1 CD2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 136 CG CD OE1 OE2 REMARK 470 LYS A 139 CG CD CE NZ REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 216 CG CD CE NZ REMARK 470 ARG A 252 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LEU B 58 CG CD1 CD2 REMARK 470 GLU B 61 CG CD OE1 OE2 REMARK 470 GLU B 136 CG CD OE1 OE2 REMARK 470 LYS B 139 CG CD CE NZ REMARK 470 ARG B 252 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 283 O HOH B 299 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -141.41 54.34 REMARK 500 ASN A 69 156.37 178.43 REMARK 500 LYS B 14 -138.78 55.68 REMARK 500 ASN B 69 159.85 178.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NO3 B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BAHEA.01246.A RELATED DB: TARGETDB DBREF 3KXQ A 1 254 UNP Q8L1Z5 TPIS_BARHE 1 254 DBREF 3KXQ B 1 254 UNP Q8L1Z5 TPIS_BARHE 1 254 SEQADV 3KXQ MET A -20 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ ALA A -19 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS A -18 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS A -17 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS A -16 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS A -15 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS A -14 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS A -13 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ MET A -12 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLY A -11 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ THR A -10 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ LEU A -9 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLU A -8 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ ALA A -7 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLN A -6 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ THR A -5 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLN A -4 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLY A -3 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ PRO A -2 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLY A -1 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ SER A 0 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ MET B -20 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ ALA B -19 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS B -18 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS B -17 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS B -16 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS B -15 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS B -14 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ HIS B -13 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ MET B -12 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLY B -11 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ THR B -10 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ LEU B -9 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLU B -8 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ ALA B -7 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLN B -6 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ THR B -5 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLN B -4 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLY B -3 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ PRO B -2 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ GLY B -1 UNP Q8L1Z5 EXPRESSION TAG SEQADV 3KXQ SER B 0 UNP Q8L1Z5 EXPRESSION TAG SEQRES 1 A 275 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 275 ALA GLN THR GLN GLY PRO GLY SER MET SER PRO ASN ILE SEQRES 3 A 275 ARG PRO PHE ILE ALA GLY ASN TRP LYS MET ASN GLY THR SEQRES 4 A 275 GLY GLU SER LEU GLY GLU LEU ARG ALA ILE ALA ALA GLY SEQRES 5 A 275 ILE SER SER ASP LEU GLY ARG LEU PHE GLU ALA LEU ILE SEQRES 6 A 275 CYS VAL PRO ALA THR LEU LEU SER ARG ALA PHE ASP ILE SEQRES 7 A 275 LEU GLY GLY GLU ASN ILE LEU LEU GLY GLY GLN ASN CYS SEQRES 8 A 275 HIS PHE ASP ASP TYR GLY PRO TYR THR GLY ASP ILE SER SEQRES 9 A 275 ALA PHE MET LEU LYS GLU ALA GLY ALA SER HIS VAL ILE SEQRES 10 A 275 ILE GLY HIS SER GLU ARG ARG THR VAL TYR GLN GLU SER SEQRES 11 A 275 ASP ALA ILE VAL ARG ALA LYS VAL GLN ALA ALA TRP ARG SEQRES 12 A 275 ALA GLY LEU VAL ALA LEU ILE CYS VAL GLY GLU THR LEU SEQRES 13 A 275 GLU GLU ARG LYS SER ASN LYS VAL LEU ASP VAL LEU THR SEQRES 14 A 275 ARG GLN LEU GLU GLY SER LEU PRO ASP GLY ALA THR ALA SEQRES 15 A 275 GLU ASN ILE ILE ILE ALA TYR GLU PRO VAL TRP ALA VAL SEQRES 16 A 275 GLY THR GLY ASN THR ALA THR SER ALA ASP VAL ALA GLU SEQRES 17 A 275 VAL HIS ALA PHE ILE HIS HIS LYS MET HIS SER ARG PHE SEQRES 18 A 275 GLY ASP GLU GLY ALA LYS ILE ARG LEU LEU TYR GLY GLY SEQRES 19 A 275 SER VAL LYS PRO SER ASN ALA PHE GLU LEU LEU SER THR SEQRES 20 A 275 ALA HIS VAL ASN GLY ALA LEU ILE GLY GLY ALA SER LEU SEQRES 21 A 275 LYS ALA ILE ASP PHE LEU THR ILE CYS ASP VAL TYR ARG SEQRES 22 A 275 LYS LEU SEQRES 1 B 275 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 275 ALA GLN THR GLN GLY PRO GLY SER MET SER PRO ASN ILE SEQRES 3 B 275 ARG PRO PHE ILE ALA GLY ASN TRP LYS MET ASN GLY THR SEQRES 4 B 275 GLY GLU SER LEU GLY GLU LEU ARG ALA ILE ALA ALA GLY SEQRES 5 B 275 ILE SER SER ASP LEU GLY ARG LEU PHE GLU ALA LEU ILE SEQRES 6 B 275 CYS VAL PRO ALA THR LEU LEU SER ARG ALA PHE ASP ILE SEQRES 7 B 275 LEU GLY GLY GLU ASN ILE LEU LEU GLY GLY GLN ASN CYS SEQRES 8 B 275 HIS PHE ASP ASP TYR GLY PRO TYR THR GLY ASP ILE SER SEQRES 9 B 275 ALA PHE MET LEU LYS GLU ALA GLY ALA SER HIS VAL ILE SEQRES 10 B 275 ILE GLY HIS SER GLU ARG ARG THR VAL TYR GLN GLU SER SEQRES 11 B 275 ASP ALA ILE VAL ARG ALA LYS VAL GLN ALA ALA TRP ARG SEQRES 12 B 275 ALA GLY LEU VAL ALA LEU ILE CYS VAL GLY GLU THR LEU SEQRES 13 B 275 GLU GLU ARG LYS SER ASN LYS VAL LEU ASP VAL LEU THR SEQRES 14 B 275 ARG GLN LEU GLU GLY SER LEU PRO ASP GLY ALA THR ALA SEQRES 15 B 275 GLU ASN ILE ILE ILE ALA TYR GLU PRO VAL TRP ALA VAL SEQRES 16 B 275 GLY THR GLY ASN THR ALA THR SER ALA ASP VAL ALA GLU SEQRES 17 B 275 VAL HIS ALA PHE ILE HIS HIS LYS MET HIS SER ARG PHE SEQRES 18 B 275 GLY ASP GLU GLY ALA LYS ILE ARG LEU LEU TYR GLY GLY SEQRES 19 B 275 SER VAL LYS PRO SER ASN ALA PHE GLU LEU LEU SER THR SEQRES 20 B 275 ALA HIS VAL ASN GLY ALA LEU ILE GLY GLY ALA SER LEU SEQRES 21 B 275 LYS ALA ILE ASP PHE LEU THR ILE CYS ASP VAL TYR ARG SEQRES 22 B 275 LYS LEU HET NO3 A 310 4 HET EDO A 300 4 HET EDO A 302 4 HET NO3 B 310 4 HET EDO B 301 4 HET EDO B 302 4 HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NO3 2(N O3 1-) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 9 HOH *591(H2 O) HELIX 1 1 THR A 18 GLU A 20 5 3 HELIX 2 2 SER A 21 SER A 33 1 13 HELIX 3 3 LEU A 50 GLY A 59 1 10 HELIX 4 4 SER A 83 GLY A 91 1 9 HELIX 5 5 HIS A 99 TYR A 106 1 8 HELIX 6 6 SER A 109 ALA A 123 1 15 HELIX 7 7 THR A 134 SER A 140 1 7 HELIX 8 8 LYS A 142 LEU A 155 1 14 HELIX 9 9 THR A 181 ALA A 205 1 25 HELIX 10 10 ASN A 219 SER A 225 1 7 HELIX 11 11 GLY A 235 LEU A 239 5 5 HELIX 12 12 LYS A 240 ASP A 249 1 10 HELIX 13 13 VAL A 250 LYS A 253 5 4 HELIX 14 14 THR B 18 GLU B 20 5 3 HELIX 15 15 SER B 21 SER B 33 1 13 HELIX 16 16 LEU B 50 GLY B 59 1 10 HELIX 17 17 SER B 83 GLY B 91 1 9 HELIX 18 18 HIS B 99 TYR B 106 1 8 HELIX 19 19 SER B 109 ALA B 123 1 15 HELIX 20 20 THR B 134 SER B 140 1 7 HELIX 21 21 LYS B 142 LEU B 155 1 14 HELIX 22 22 THR B 181 ALA B 205 1 25 HELIX 23 23 ASN B 219 SER B 225 1 7 HELIX 24 24 GLY B 235 LEU B 239 5 5 HELIX 25 25 LYS B 240 ASP B 249 1 10 HELIX 26 26 VAL B 250 LYS B 253 5 4 SHEET 1 A 9 PHE A 8 ASN A 12 0 SHEET 2 A 9 GLU A 41 CYS A 45 1 O CYS A 45 N GLY A 11 SHEET 3 A 9 LEU A 64 GLY A 67 1 O LEU A 64 N ALA A 42 SHEET 4 A 9 HIS A 94 ILE A 97 1 O HIS A 94 N GLY A 67 SHEET 5 A 9 VAL A 126 VAL A 131 1 O LEU A 128 N VAL A 95 SHEET 6 A 9 ILE A 164 TYR A 168 1 O ALA A 167 N ILE A 129 SHEET 7 A 9 LEU A 209 TYR A 211 1 O LEU A 210 N ILE A 166 SHEET 8 A 9 GLY A 231 ILE A 234 1 O GLY A 231 N TYR A 211 SHEET 9 A 9 PHE A 8 ASN A 12 1 N ALA A 10 O ILE A 234 SHEET 1 B 9 PHE B 8 ASN B 12 0 SHEET 2 B 9 GLU B 41 CYS B 45 1 O CYS B 45 N GLY B 11 SHEET 3 B 9 LEU B 64 GLY B 67 1 O LEU B 64 N ALA B 42 SHEET 4 B 9 HIS B 94 ILE B 97 1 O HIS B 94 N GLY B 67 SHEET 5 B 9 VAL B 126 VAL B 131 1 O LEU B 128 N VAL B 95 SHEET 6 B 9 ILE B 164 TYR B 168 1 O ALA B 167 N ILE B 129 SHEET 7 B 9 LEU B 209 TYR B 211 1 O LEU B 210 N ILE B 166 SHEET 8 B 9 GLY B 231 ILE B 234 1 O GLY B 231 N TYR B 211 SHEET 9 B 9 PHE B 8 ASN B 12 1 N ASN B 12 O ILE B 234 SITE 1 AC1 8 ASN A 12 LYS A 14 HIS A 99 LEU A 233 SITE 2 AC1 8 ILE A 234 GLY A 235 HOH A 334 HOH A 492 SITE 1 AC2 9 ASN B 12 LYS B 14 HIS B 99 LEU B 233 SITE 2 AC2 9 ILE B 234 GLY B 235 HOH B 256 HOH B 391 SITE 3 AC2 9 HOH B 457 SITE 1 AC3 3 ALA A 190 HIS A 193 HIS A 194 SITE 1 AC4 6 GLY A 80 ASP A 81 ARG A 102 GLY B 80 SITE 2 AC4 6 ASP B 81 ARG B 102 SITE 1 AC5 5 TRP A 13 LEU A 239 LYS A 240 HOH A 471 SITE 2 AC5 5 HOH A 483 SITE 1 AC6 5 TRP B 13 LEU B 239 HOH B 405 HOH B 421 SITE 2 AC6 5 HOH B 479 CRYST1 44.900 141.050 44.930 90.00 109.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022272 0.000000 0.007964 0.00000 SCALE2 0.000000 0.007090 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023637 0.00000