HEADER TRANSPORT PROTEIN 03-DEC-09 3KXR TITLE STRUCTURE OF THE CYSTATHIONINE BETA-SYNTHASE PAIR DOMAIN OF THE TITLE 2 PUTATIVE MG2+ TRANSPORTER SO5017 FROM SHEWANELLA ONEIDENSIS MR-1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAGNESIUM TRANSPORTER, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS MR-1; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 GENE: SO_1565; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIPL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS CYSTATHIONINE BETA-SYNTHASE, MG2+ TRANSPORTER, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, MCSG, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Z.FRATCZAK,M.D.ZIMMERMAN,M.CHRUSZCZ,M.CYMBOROWSKI,O.KAGAN, AUTHOR 2 A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (MCSG) REVDAT 4 06-NOV-24 3KXR 1 REMARK REVDAT 3 13-APR-22 3KXR 1 AUTHOR JRNL REMARK LINK REVDAT 2 13-JUL-11 3KXR 1 VERSN REVDAT 1 15-DEC-09 3KXR 0 JRNL AUTH Z.FRATCZAK,M.D.ZIMMERMAN,M.CHRUSZCZ,M.CYMBOROWSKI,O.KAGAN, JRNL AUTH 2 A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,W.MINOR JRNL TITL STRUCTURE OF THE CYSTATHIONINE BETA-SYNTHASE PAIR DOMAIN OF JRNL TITL 2 THE PUTATIVE MG2+ TRANSPORTER SO5017 FROM SHEWANELLA JRNL TITL 3 ONEIDENSIS MR-1. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 10835 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 517 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 61.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.86000 REMARK 3 B22 (A**2) : -1.86000 REMARK 3 B33 (A**2) : 2.80000 REMARK 3 B12 (A**2) : -0.93000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.253 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.206 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.798 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1388 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 926 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1882 ; 1.453 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2251 ; 0.906 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 170 ; 5.789 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 73 ;33.858 ;24.384 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 238 ;16.647 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;21.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 214 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1559 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 283 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 854 ; 0.695 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 341 ; 0.127 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1372 ; 1.414 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 534 ; 2.603 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 510 ; 4.147 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5133 14.6918 35.6545 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.1239 REMARK 3 T33: 0.1778 T12: 0.0215 REMARK 3 T13: 0.0273 T23: -0.0794 REMARK 3 L TENSOR REMARK 3 L11: 6.7321 L22: 1.7970 REMARK 3 L33: 0.7723 L12: -0.8743 REMARK 3 L13: 1.8538 L23: 0.0422 REMARK 3 S TENSOR REMARK 3 S11: 0.0687 S12: 0.0031 S13: -0.4893 REMARK 3 S21: -0.1602 S22: 0.0519 S23: 0.1087 REMARK 3 S31: 0.0340 S32: 0.0781 S33: -0.1206 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 27.0446 7.6532 34.6479 REMARK 3 T TENSOR REMARK 3 T11: 0.0542 T22: 0.0955 REMARK 3 T33: 0.0323 T12: 0.0164 REMARK 3 T13: -0.0069 T23: -0.0262 REMARK 3 L TENSOR REMARK 3 L11: 3.2752 L22: 1.9356 REMARK 3 L33: 1.3782 L12: -1.2651 REMARK 3 L13: 0.4730 L23: 0.1916 REMARK 3 S TENSOR REMARK 3 S11: 0.1167 S12: 0.0626 S13: 0.1573 REMARK 3 S21: -0.0628 S22: -0.0698 S23: 0.0338 REMARK 3 S31: 0.1180 S32: 0.1366 S33: -0.0468 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9081 21.6665 32.9689 REMARK 3 T TENSOR REMARK 3 T11: 0.0426 T22: 0.0679 REMARK 3 T33: 0.1911 T12: 0.0224 REMARK 3 T13: 0.0017 T23: -0.0622 REMARK 3 L TENSOR REMARK 3 L11: 3.2395 L22: 3.4853 REMARK 3 L33: 5.6192 L12: 0.1389 REMARK 3 L13: 0.1813 L23: 0.5564 REMARK 3 S TENSOR REMARK 3 S11: 0.0257 S12: -0.1975 S13: 0.5638 REMARK 3 S21: -0.0680 S22: 0.0535 S23: 0.0699 REMARK 3 S31: -0.3401 S32: 0.1240 S33: -0.0792 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 4 REMARK 4 3KXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056579. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10867 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : 0.09300 REMARK 200 FOR THE DATA SET : 57.0710 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 18.30 REMARK 200 R MERGE FOR SHELL (I) : 0.87800 REMARK 200 R SYM FOR SHELL (I) : 0.87800 REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, SHELXD, DM, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350 25%,DI-NA-TARTRATE REMARK 280 0.2M,TRIS0.1M PH8.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 51.79800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 29.90559 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.76733 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 51.79800 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 29.90559 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.76733 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 51.79800 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 29.90559 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.76733 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 51.79800 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 29.90559 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.76733 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 51.79800 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 29.90559 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.76733 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 51.79800 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 29.90559 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.76733 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.81118 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 89.53467 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 59.81118 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 89.53467 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 59.81118 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 89.53467 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 59.81118 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 89.53467 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 59.81118 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 89.53467 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 59.81118 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 89.53467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -79.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 VAL A 6 REMARK 465 ALA A 178 REMARK 465 GLN A 179 REMARK 465 LEU A 180 REMARK 465 MSE A 181 REMARK 465 ALA A 182 REMARK 465 THR A 183 REMARK 465 ALA A 184 REMARK 465 GLY A 185 REMARK 465 MSE A 186 REMARK 465 ASP A 187 REMARK 465 GLU A 188 REMARK 465 SER A 189 REMARK 465 ASP A 190 REMARK 465 ASP A 191 REMARK 465 LEU A 192 REMARK 465 PHE A 193 REMARK 465 ALA A 194 REMARK 465 PRO A 195 REMARK 465 ILE A 196 REMARK 465 LEU A 197 REMARK 465 LYS A 198 REMARK 465 GLY A 199 REMARK 465 ALA A 200 REMARK 465 GLN A 201 REMARK 465 ARG A 202 REMARK 465 ARG A 203 REMARK 465 ALA A 204 REMARK 465 VAL A 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 7 CG OD1 OD2 REMARK 470 GLU A 27 CD OE1 OE2 REMARK 470 ARG A 40 NE CZ NH1 NH2 REMARK 470 ARG A 81 NE CZ NH1 NH2 REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 ARG A 127 NE CZ NH1 NH2 REMARK 470 ARG A 173 CZ NH1 NH2 REMARK 470 TYR A 176 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 89 22.91 -146.94 REMARK 500 HIS A 144 55.24 -95.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC65312.2 RELATED DB: TARGETDB DBREF 3KXR A 1 205 UNP Q8EGN5 Q8EGN5_SHEON 90 294 SEQRES 1 A 205 MSE PRO ASP ASN GLU VAL ASP LEU LEU PHE ALA GLN LEU SEQRES 2 A 205 SER PRO GLU ASP LEU ILE GLU TRP SER ASP TYR LEU PRO SEQRES 3 A 205 GLU SER PHE THR ASP ARG ALA LEU ALA GLN MSE GLY GLU SEQRES 4 A 205 ARG GLN ARG GLN ARG PHE GLU LEU TYR ASP GLN TYR SER SEQRES 5 A 205 GLU ASN GLU ILE GLY ARG TYR THR ASP HIS GLN MSE LEU SEQRES 6 A 205 VAL LEU SER ASP LYS ALA THR VAL ALA GLN ALA GLN ARG SEQRES 7 A 205 PHE PHE ARG ARG ILE GLU LEU ASP CYS ASN ASP ASN LEU SEQRES 8 A 205 PHE ILE VAL ASP GLU ALA ASP LYS TYR LEU GLY THR VAL SEQRES 9 A 205 ARG ARG TYR ASP ILE PHE LYS HIS GLU PRO HIS GLU PRO SEQRES 10 A 205 LEU ILE SER LEU LEU SER GLU ASP SER ARG ALA LEU THR SEQRES 11 A 205 ALA ASN THR THR LEU LEU ASP ALA ALA GLU ALA ILE GLU SEQRES 12 A 205 HIS SER ARG GLU ILE GLU LEU PRO VAL ILE ASP ASP ALA SEQRES 13 A 205 GLY GLU LEU ILE GLY ARG VAL THR LEU ARG ALA ALA THR SEQRES 14 A 205 ALA LEU VAL ARG GLU HIS TYR GLU ALA GLN LEU MSE ALA SEQRES 15 A 205 THR ALA GLY MSE ASP GLU SER ASP ASP LEU PHE ALA PRO SEQRES 16 A 205 ILE LEU LYS GLY ALA GLN ARG ARG ALA VAL MODRES 3KXR MSE A 37 MET SELENOMETHIONINE MODRES 3KXR MSE A 64 MET SELENOMETHIONINE HET MSE A 37 8 HET MSE A 64 8 HET CL A 206 1 HET CL A 207 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 2 CL 2(CL 1-) FORMUL 4 HOH *30(H2 O) HELIX 1 1 LEU A 9 LEU A 13 5 5 HELIX 2 2 SER A 14 TRP A 21 1 8 HELIX 3 3 PRO A 26 MSE A 37 1 12 HELIX 4 4 GLY A 38 TYR A 51 1 14 HELIX 5 5 GLU A 55 THR A 60 5 6 HELIX 6 6 THR A 72 ILE A 83 1 12 HELIX 7 7 ARG A 106 PHE A 110 1 5 HELIX 8 8 PRO A 117 LEU A 122 5 6 HELIX 9 9 THR A 134 HIS A 144 1 11 HELIX 10 10 LEU A 165 GLU A 177 1 13 SHEET 1 A 3 VAL A 66 SER A 68 0 SHEET 2 A 3 ASN A 90 VAL A 94 1 O PHE A 92 N LEU A 67 SHEET 3 A 3 TYR A 100 ARG A 105 -1 O LEU A 101 N ILE A 93 SHEET 1 B 3 LEU A 129 THR A 130 0 SHEET 2 B 3 GLU A 149 ILE A 153 1 O PRO A 151 N LEU A 129 SHEET 3 B 3 LEU A 159 THR A 164 -1 O GLY A 161 N VAL A 152 LINK C MSE A 37 N GLY A 38 1555 1555 1.33 LINK C MSE A 64 N LEU A 65 1555 1555 1.32 SITE 1 AC1 1 ARG A 78 SITE 1 AC2 3 TRP A 21 GLN A 75 ARG A 78 CRYST1 103.596 103.596 134.302 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009650 0.005570 0.000000 0.00000 SCALE2 0.000000 0.011150 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007450 0.00000