data_3KYF # _entry.id 3KYF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.388 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3KYF pdb_00003kyf 10.2210/pdb3kyf/pdb RCSB RCSB056603 ? ? WWPDB D_1000056603 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-04-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-03-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3KYF _pdbx_database_status.recvd_initial_deposition_date 2009-12-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 3KYG _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ryu, K.S.' 1 'Ko, J.' 2 'Kim, H.' 3 'Choi, B.S.' 4 # _citation.id primary _citation.title 'Structure of PP4397 Reveals the Molecular Basis for Different c-di-GMP Binding Modes by Pilz Domain Proteins.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 398 _citation.page_first 97 _citation.page_last 110 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20226196 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.03.007 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Ko, J.' 1 ? primary 'Ryu, K.S.' 2 ? primary 'Kim, H.' 3 ? primary 'Shin, J.S.' 4 ? primary 'Lee, J.O.' 5 ? primary 'Cheong, C.' 6 ? primary 'Choi, B.S.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative uncharacterized protein' 26529.023 1 ? ? 'UNP residues 8-238' ? 2 non-polymer syn "GUANOSINE-5'-MONOPHOSPHATE" 363.221 4 ? ? ? ? 3 water nat water 18.015 171 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PP4397 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQPPKVLSTPLEIAANLRQLQESHDPLIITFHDRSHRFQSYVVHVDRESNTLALDEMIPRDGEKFIENGEHFRVEGFHDG VRIAWECDHALKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGAHLKGNGAMRGKLLDISATGCKLRF EGNVEDRLQLGQVYERFKAGNPLGLVDTMVELRHLHYEERINTTFAGVRFHNLSGQAQRKIESFVYQLQRE ; _entity_poly.pdbx_seq_one_letter_code_can ;PQPPKVLSTPLEIAANLRQLQESHDPLIITFHDRSHRFQSYVVHVDRESNTLALDEMIPRDGEKFIENGEHFRVEGFHDG VRIAWECDHALKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGAHLKGNGAMRGKLLDISATGCKLRF EGNVEDRLQLGQVYERFKAGNPLGLVDTMVELRHLHYEERINTTFAGVRFHNLSGQAQRKIESFVYQLQRE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-MONOPHOSPHATE" 5GP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 PRO n 1 4 PRO n 1 5 LYS n 1 6 VAL n 1 7 LEU n 1 8 SER n 1 9 THR n 1 10 PRO n 1 11 LEU n 1 12 GLU n 1 13 ILE n 1 14 ALA n 1 15 ALA n 1 16 ASN n 1 17 LEU n 1 18 ARG n 1 19 GLN n 1 20 LEU n 1 21 GLN n 1 22 GLU n 1 23 SER n 1 24 HIS n 1 25 ASP n 1 26 PRO n 1 27 LEU n 1 28 ILE n 1 29 ILE n 1 30 THR n 1 31 PHE n 1 32 HIS n 1 33 ASP n 1 34 ARG n 1 35 SER n 1 36 HIS n 1 37 ARG n 1 38 PHE n 1 39 GLN n 1 40 SER n 1 41 TYR n 1 42 VAL n 1 43 VAL n 1 44 HIS n 1 45 VAL n 1 46 ASP n 1 47 ARG n 1 48 GLU n 1 49 SER n 1 50 ASN n 1 51 THR n 1 52 LEU n 1 53 ALA n 1 54 LEU n 1 55 ASP n 1 56 GLU n 1 57 MET n 1 58 ILE n 1 59 PRO n 1 60 ARG n 1 61 ASP n 1 62 GLY n 1 63 GLU n 1 64 LYS n 1 65 PHE n 1 66 ILE n 1 67 GLU n 1 68 ASN n 1 69 GLY n 1 70 GLU n 1 71 HIS n 1 72 PHE n 1 73 ARG n 1 74 VAL n 1 75 GLU n 1 76 GLY n 1 77 PHE n 1 78 HIS n 1 79 ASP n 1 80 GLY n 1 81 VAL n 1 82 ARG n 1 83 ILE n 1 84 ALA n 1 85 TRP n 1 86 GLU n 1 87 CYS n 1 88 ASP n 1 89 HIS n 1 90 ALA n 1 91 LEU n 1 92 LYS n 1 93 ILE n 1 94 SER n 1 95 GLU n 1 96 VAL n 1 97 ASP n 1 98 GLY n 1 99 HIS n 1 100 ARG n 1 101 CYS n 1 102 TYR n 1 103 SER n 1 104 GLY n 1 105 PRO n 1 106 LEU n 1 107 PRO n 1 108 GLN n 1 109 GLU n 1 110 VAL n 1 111 THR n 1 112 TYR n 1 113 HIS n 1 114 GLN n 1 115 ARG n 1 116 ARG n 1 117 ASN n 1 118 ALA n 1 119 PHE n 1 120 ARG n 1 121 ALA n 1 122 ALA n 1 123 LEU n 1 124 LYS n 1 125 LEU n 1 126 SER n 1 127 GLN n 1 128 LEU n 1 129 VAL n 1 130 ASP n 1 131 ILE n 1 132 ILE n 1 133 LEU n 1 134 ASP n 1 135 GLY n 1 136 ALA n 1 137 HIS n 1 138 LEU n 1 139 LYS n 1 140 GLY n 1 141 ASN n 1 142 GLY n 1 143 ALA n 1 144 MET n 1 145 ARG n 1 146 GLY n 1 147 LYS n 1 148 LEU n 1 149 LEU n 1 150 ASP n 1 151 ILE n 1 152 SER n 1 153 ALA n 1 154 THR n 1 155 GLY n 1 156 CYS n 1 157 LYS n 1 158 LEU n 1 159 ARG n 1 160 PHE n 1 161 GLU n 1 162 GLY n 1 163 ASN n 1 164 VAL n 1 165 GLU n 1 166 ASP n 1 167 ARG n 1 168 LEU n 1 169 GLN n 1 170 LEU n 1 171 GLY n 1 172 GLN n 1 173 VAL n 1 174 TYR n 1 175 GLU n 1 176 ARG n 1 177 PHE n 1 178 LYS n 1 179 ALA n 1 180 GLY n 1 181 ASN n 1 182 PRO n 1 183 LEU n 1 184 GLY n 1 185 LEU n 1 186 VAL n 1 187 ASP n 1 188 THR n 1 189 MET n 1 190 VAL n 1 191 GLU n 1 192 LEU n 1 193 ARG n 1 194 HIS n 1 195 LEU n 1 196 HIS n 1 197 TYR n 1 198 GLU n 1 199 GLU n 1 200 ARG n 1 201 ILE n 1 202 ASN n 1 203 THR n 1 204 THR n 1 205 PHE n 1 206 ALA n 1 207 GLY n 1 208 VAL n 1 209 ARG n 1 210 PHE n 1 211 HIS n 1 212 ASN n 1 213 LEU n 1 214 SER n 1 215 GLY n 1 216 GLN n 1 217 ALA n 1 218 GLN n 1 219 ARG n 1 220 LYS n 1 221 ILE n 1 222 GLU n 1 223 SER n 1 224 PHE n 1 225 VAL n 1 226 TYR n 1 227 GLN n 1 228 LEU n 1 229 GLN n 1 230 ARG n 1 231 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene PP4397 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain KT2440 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Pseudomonas putida' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 160488 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5GP non-polymer . "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 8 8 PRO PRO A . n A 1 2 GLN 2 9 9 GLN GLN A . n A 1 3 PRO 3 10 10 PRO PRO A . n A 1 4 PRO 4 11 11 PRO PRO A . n A 1 5 LYS 5 12 12 LYS LYS A . n A 1 6 VAL 6 13 13 VAL VAL A . n A 1 7 LEU 7 14 14 LEU LEU A . n A 1 8 SER 8 15 15 SER SER A . n A 1 9 THR 9 16 16 THR THR A . n A 1 10 PRO 10 17 17 PRO PRO A . n A 1 11 LEU 11 18 18 LEU LEU A . n A 1 12 GLU 12 19 19 GLU GLU A . n A 1 13 ILE 13 20 20 ILE ILE A . n A 1 14 ALA 14 21 21 ALA ALA A . n A 1 15 ALA 15 22 22 ALA ALA A . n A 1 16 ASN 16 23 23 ASN ASN A . n A 1 17 LEU 17 24 24 LEU LEU A . n A 1 18 ARG 18 25 25 ARG ARG A . n A 1 19 GLN 19 26 26 GLN GLN A . n A 1 20 LEU 20 27 27 LEU LEU A . n A 1 21 GLN 21 28 28 GLN GLN A . n A 1 22 GLU 22 29 29 GLU GLU A . n A 1 23 SER 23 30 30 SER SER A . n A 1 24 HIS 24 31 31 HIS HIS A . n A 1 25 ASP 25 32 32 ASP ASP A . n A 1 26 PRO 26 33 33 PRO PRO A . n A 1 27 LEU 27 34 34 LEU LEU A . n A 1 28 ILE 28 35 35 ILE ILE A . n A 1 29 ILE 29 36 36 ILE ILE A . n A 1 30 THR 30 37 37 THR THR A . n A 1 31 PHE 31 38 38 PHE PHE A . n A 1 32 HIS 32 39 39 HIS HIS A . n A 1 33 ASP 33 40 40 ASP ASP A . n A 1 34 ARG 34 41 41 ARG ARG A . n A 1 35 SER 35 42 42 SER SER A . n A 1 36 HIS 36 43 43 HIS HIS A . n A 1 37 ARG 37 44 44 ARG ARG A . n A 1 38 PHE 38 45 45 PHE PHE A . n A 1 39 GLN 39 46 46 GLN GLN A . n A 1 40 SER 40 47 47 SER SER A . n A 1 41 TYR 41 48 48 TYR TYR A . n A 1 42 VAL 42 49 49 VAL VAL A . n A 1 43 VAL 43 50 50 VAL VAL A . n A 1 44 HIS 44 51 51 HIS HIS A . n A 1 45 VAL 45 52 52 VAL VAL A . n A 1 46 ASP 46 53 53 ASP ASP A . n A 1 47 ARG 47 54 54 ARG ARG A . n A 1 48 GLU 48 55 55 GLU GLU A . n A 1 49 SER 49 56 56 SER SER A . n A 1 50 ASN 50 57 57 ASN ASN A . n A 1 51 THR 51 58 58 THR THR A . n A 1 52 LEU 52 59 59 LEU LEU A . n A 1 53 ALA 53 60 60 ALA ALA A . n A 1 54 LEU 54 61 61 LEU LEU A . n A 1 55 ASP 55 62 62 ASP ASP A . n A 1 56 GLU 56 63 63 GLU GLU A . n A 1 57 MET 57 64 64 MET MET A . n A 1 58 ILE 58 65 65 ILE ILE A . n A 1 59 PRO 59 66 66 PRO PRO A . n A 1 60 ARG 60 67 67 ARG ARG A . n A 1 61 ASP 61 68 68 ASP ASP A . n A 1 62 GLY 62 69 69 GLY GLY A . n A 1 63 GLU 63 70 70 GLU GLU A . n A 1 64 LYS 64 71 71 LYS LYS A . n A 1 65 PHE 65 72 72 PHE PHE A . n A 1 66 ILE 66 73 73 ILE ILE A . n A 1 67 GLU 67 74 74 GLU GLU A . n A 1 68 ASN 68 75 75 ASN ASN A . n A 1 69 GLY 69 76 76 GLY GLY A . n A 1 70 GLU 70 77 77 GLU GLU A . n A 1 71 HIS 71 78 78 HIS HIS A . n A 1 72 PHE 72 79 79 PHE PHE A . n A 1 73 ARG 73 80 80 ARG ARG A . n A 1 74 VAL 74 81 81 VAL VAL A . n A 1 75 GLU 75 82 82 GLU GLU A . n A 1 76 GLY 76 83 83 GLY GLY A . n A 1 77 PHE 77 84 84 PHE PHE A . n A 1 78 HIS 78 85 85 HIS HIS A . n A 1 79 ASP 79 86 86 ASP ASP A . n A 1 80 GLY 80 87 87 GLY GLY A . n A 1 81 VAL 81 88 88 VAL VAL A . n A 1 82 ARG 82 89 89 ARG ARG A . n A 1 83 ILE 83 90 90 ILE ILE A . n A 1 84 ALA 84 91 91 ALA ALA A . n A 1 85 TRP 85 92 92 TRP TRP A . n A 1 86 GLU 86 93 93 GLU GLU A . n A 1 87 CYS 87 94 94 CYS CYS A . n A 1 88 ASP 88 95 95 ASP ASP A . n A 1 89 HIS 89 96 96 HIS HIS A . n A 1 90 ALA 90 97 97 ALA ALA A . n A 1 91 LEU 91 98 98 LEU LEU A . n A 1 92 LYS 92 99 99 LYS LYS A . n A 1 93 ILE 93 100 100 ILE ILE A . n A 1 94 SER 94 101 101 SER SER A . n A 1 95 GLU 95 102 102 GLU GLU A . n A 1 96 VAL 96 103 103 VAL VAL A . n A 1 97 ASP 97 104 104 ASP ASP A . n A 1 98 GLY 98 105 105 GLY GLY A . n A 1 99 HIS 99 106 106 HIS HIS A . n A 1 100 ARG 100 107 107 ARG ARG A . n A 1 101 CYS 101 108 108 CYS CYS A . n A 1 102 TYR 102 109 109 TYR TYR A . n A 1 103 SER 103 110 110 SER SER A . n A 1 104 GLY 104 111 111 GLY GLY A . n A 1 105 PRO 105 112 112 PRO PRO A . n A 1 106 LEU 106 113 113 LEU LEU A . n A 1 107 PRO 107 114 114 PRO PRO A . n A 1 108 GLN 108 115 115 GLN GLN A . n A 1 109 GLU 109 116 116 GLU GLU A . n A 1 110 VAL 110 117 117 VAL VAL A . n A 1 111 THR 111 118 118 THR THR A . n A 1 112 TYR 112 119 119 TYR TYR A . n A 1 113 HIS 113 120 120 HIS HIS A . n A 1 114 GLN 114 121 121 GLN GLN A . n A 1 115 ARG 115 122 122 ARG ARG A . n A 1 116 ARG 116 123 123 ARG ARG A . n A 1 117 ASN 117 124 124 ASN ASN A . n A 1 118 ALA 118 125 125 ALA ALA A . n A 1 119 PHE 119 126 126 PHE PHE A . n A 1 120 ARG 120 127 127 ARG ARG A . n A 1 121 ALA 121 128 128 ALA ALA A . n A 1 122 ALA 122 129 129 ALA ALA A . n A 1 123 LEU 123 130 130 LEU LEU A . n A 1 124 LYS 124 131 131 LYS LYS A . n A 1 125 LEU 125 132 132 LEU LEU A . n A 1 126 SER 126 133 133 SER SER A . n A 1 127 GLN 127 134 134 GLN GLN A . n A 1 128 LEU 128 135 135 LEU LEU A . n A 1 129 VAL 129 136 136 VAL VAL A . n A 1 130 ASP 130 137 137 ASP ASP A . n A 1 131 ILE 131 138 138 ILE ILE A . n A 1 132 ILE 132 139 139 ILE ILE A . n A 1 133 LEU 133 140 140 LEU LEU A . n A 1 134 ASP 134 141 141 ASP ASP A . n A 1 135 GLY 135 142 142 GLY GLY A . n A 1 136 ALA 136 143 143 ALA ALA A . n A 1 137 HIS 137 144 144 HIS HIS A . n A 1 138 LEU 138 145 145 LEU LEU A . n A 1 139 LYS 139 146 146 LYS LYS A . n A 1 140 GLY 140 147 147 GLY GLY A . n A 1 141 ASN 141 148 148 ASN ASN A . n A 1 142 GLY 142 149 149 GLY GLY A . n A 1 143 ALA 143 150 150 ALA ALA A . n A 1 144 MET 144 151 151 MET MET A . n A 1 145 ARG 145 152 152 ARG ARG A . n A 1 146 GLY 146 153 153 GLY GLY A . n A 1 147 LYS 147 154 154 LYS LYS A . n A 1 148 LEU 148 155 155 LEU LEU A . n A 1 149 LEU 149 156 156 LEU LEU A . n A 1 150 ASP 150 157 157 ASP ASP A . n A 1 151 ILE 151 158 158 ILE ILE A . n A 1 152 SER 152 159 159 SER SER A . n A 1 153 ALA 153 160 160 ALA ALA A . n A 1 154 THR 154 161 161 THR THR A . n A 1 155 GLY 155 162 162 GLY GLY A . n A 1 156 CYS 156 163 163 CYS CYS A . n A 1 157 LYS 157 164 164 LYS LYS A . n A 1 158 LEU 158 165 165 LEU LEU A . n A 1 159 ARG 159 166 166 ARG ARG A . n A 1 160 PHE 160 167 167 PHE PHE A . n A 1 161 GLU 161 168 168 GLU GLU A . n A 1 162 GLY 162 169 169 GLY GLY A . n A 1 163 ASN 163 170 170 ASN ASN A . n A 1 164 VAL 164 171 171 VAL VAL A . n A 1 165 GLU 165 172 172 GLU GLU A . n A 1 166 ASP 166 173 173 ASP ASP A . n A 1 167 ARG 167 174 174 ARG ARG A . n A 1 168 LEU 168 175 175 LEU LEU A . n A 1 169 GLN 169 176 176 GLN GLN A . n A 1 170 LEU 170 177 177 LEU LEU A . n A 1 171 GLY 171 178 178 GLY GLY A . n A 1 172 GLN 172 179 179 GLN GLN A . n A 1 173 VAL 173 180 180 VAL VAL A . n A 1 174 TYR 174 181 181 TYR TYR A . n A 1 175 GLU 175 182 182 GLU GLU A . n A 1 176 ARG 176 183 183 ARG ARG A . n A 1 177 PHE 177 184 184 PHE PHE A . n A 1 178 LYS 178 185 185 LYS LYS A . n A 1 179 ALA 179 186 186 ALA ALA A . n A 1 180 GLY 180 187 187 GLY GLY A . n A 1 181 ASN 181 188 188 ASN ASN A . n A 1 182 PRO 182 189 189 PRO PRO A . n A 1 183 LEU 183 190 190 LEU LEU A . n A 1 184 GLY 184 191 191 GLY GLY A . n A 1 185 LEU 185 192 192 LEU LEU A . n A 1 186 VAL 186 193 193 VAL VAL A . n A 1 187 ASP 187 194 194 ASP ASP A . n A 1 188 THR 188 195 195 THR THR A . n A 1 189 MET 189 196 196 MET MET A . n A 1 190 VAL 190 197 197 VAL VAL A . n A 1 191 GLU 191 198 198 GLU GLU A . n A 1 192 LEU 192 199 199 LEU LEU A . n A 1 193 ARG 193 200 200 ARG ARG A . n A 1 194 HIS 194 201 201 HIS HIS A . n A 1 195 LEU 195 202 202 LEU LEU A . n A 1 196 HIS 196 203 203 HIS HIS A . n A 1 197 TYR 197 204 204 TYR TYR A . n A 1 198 GLU 198 205 205 GLU GLU A . n A 1 199 GLU 199 206 206 GLU GLU A . n A 1 200 ARG 200 207 207 ARG ARG A . n A 1 201 ILE 201 208 208 ILE ILE A . n A 1 202 ASN 202 209 209 ASN ASN A . n A 1 203 THR 203 210 210 THR THR A . n A 1 204 THR 204 211 211 THR THR A . n A 1 205 PHE 205 212 212 PHE PHE A . n A 1 206 ALA 206 213 213 ALA ALA A . n A 1 207 GLY 207 214 214 GLY GLY A . n A 1 208 VAL 208 215 215 VAL VAL A . n A 1 209 ARG 209 216 216 ARG ARG A . n A 1 210 PHE 210 217 217 PHE PHE A . n A 1 211 HIS 211 218 218 HIS HIS A . n A 1 212 ASN 212 219 219 ASN ASN A . n A 1 213 LEU 213 220 220 LEU LEU A . n A 1 214 SER 214 221 221 SER SER A . n A 1 215 GLY 215 222 222 GLY GLY A . n A 1 216 GLN 216 223 223 GLN GLN A . n A 1 217 ALA 217 224 224 ALA ALA A . n A 1 218 GLN 218 225 225 GLN GLN A . n A 1 219 ARG 219 226 226 ARG ARG A . n A 1 220 LYS 220 227 227 LYS LYS A . n A 1 221 ILE 221 228 228 ILE ILE A . n A 1 222 GLU 222 229 229 GLU GLU A . n A 1 223 SER 223 230 230 SER SER A . n A 1 224 PHE 224 231 231 PHE PHE A . n A 1 225 VAL 225 232 232 VAL VAL A . n A 1 226 TYR 226 233 233 TYR TYR A . n A 1 227 GLN 227 234 234 GLN GLN A . n A 1 228 LEU 228 235 235 LEU LEU A . n A 1 229 GLN 229 236 236 GLN GLN A . n A 1 230 ARG 230 237 237 ARG ARG A . n A 1 231 GLU 231 238 238 GLU GLU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5GP 1 501 501 5GP 5GP A . C 2 5GP 1 502 502 5GP 5GP A . D 2 5GP 1 503 503 5GP 5GP A . E 2 5GP 1 504 504 5GP 5GP A . F 3 HOH 1 1 1 HOH HOH A . F 3 HOH 2 2 2 HOH HOH A . F 3 HOH 3 3 3 HOH HOH A . F 3 HOH 4 4 4 HOH HOH A . F 3 HOH 5 5 5 HOH HOH A . F 3 HOH 6 6 6 HOH HOH A . F 3 HOH 7 7 7 HOH HOH A . F 3 HOH 8 239 8 HOH HOH A . F 3 HOH 9 240 9 HOH HOH A . F 3 HOH 10 241 10 HOH HOH A . F 3 HOH 11 242 11 HOH HOH A . F 3 HOH 12 243 12 HOH HOH A . F 3 HOH 13 244 13 HOH HOH A . F 3 HOH 14 245 14 HOH HOH A . F 3 HOH 15 246 15 HOH HOH A . F 3 HOH 16 247 16 HOH HOH A . F 3 HOH 17 248 17 HOH HOH A . F 3 HOH 18 249 18 HOH HOH A . F 3 HOH 19 250 19 HOH HOH A . F 3 HOH 20 251 20 HOH HOH A . F 3 HOH 21 252 21 HOH HOH A . F 3 HOH 22 253 22 HOH HOH A . F 3 HOH 23 254 23 HOH HOH A . F 3 HOH 24 255 24 HOH HOH A . F 3 HOH 25 256 25 HOH HOH A . F 3 HOH 26 257 26 HOH HOH A . F 3 HOH 27 258 27 HOH HOH A . F 3 HOH 28 259 28 HOH HOH A . F 3 HOH 29 260 29 HOH HOH A . F 3 HOH 30 261 30 HOH HOH A . F 3 HOH 31 262 31 HOH HOH A . F 3 HOH 32 263 32 HOH HOH A . F 3 HOH 33 264 33 HOH HOH A . F 3 HOH 34 265 34 HOH HOH A . F 3 HOH 35 266 35 HOH HOH A . F 3 HOH 36 267 36 HOH HOH A . F 3 HOH 37 268 37 HOH HOH A . F 3 HOH 38 269 38 HOH HOH A . F 3 HOH 39 270 39 HOH HOH A . F 3 HOH 40 271 40 HOH HOH A . F 3 HOH 41 272 41 HOH HOH A . F 3 HOH 42 273 42 HOH HOH A . F 3 HOH 43 274 43 HOH HOH A . F 3 HOH 44 275 44 HOH HOH A . F 3 HOH 45 276 45 HOH HOH A . F 3 HOH 46 277 46 HOH HOH A . F 3 HOH 47 278 47 HOH HOH A . F 3 HOH 48 279 48 HOH HOH A . F 3 HOH 49 280 49 HOH HOH A . F 3 HOH 50 281 50 HOH HOH A . F 3 HOH 51 282 51 HOH HOH A . F 3 HOH 52 283 52 HOH HOH A . F 3 HOH 53 284 53 HOH HOH A . F 3 HOH 54 285 54 HOH HOH A . F 3 HOH 55 286 55 HOH HOH A . F 3 HOH 56 287 56 HOH HOH A . F 3 HOH 57 288 57 HOH HOH A . F 3 HOH 58 289 58 HOH HOH A . F 3 HOH 59 290 59 HOH HOH A . F 3 HOH 60 291 60 HOH HOH A . F 3 HOH 61 292 61 HOH HOH A . F 3 HOH 62 293 62 HOH HOH A . F 3 HOH 63 294 63 HOH HOH A . F 3 HOH 64 295 64 HOH HOH A . F 3 HOH 65 296 65 HOH HOH A . F 3 HOH 66 297 66 HOH HOH A . F 3 HOH 67 298 67 HOH HOH A . F 3 HOH 68 299 68 HOH HOH A . F 3 HOH 69 300 69 HOH HOH A . F 3 HOH 70 301 70 HOH HOH A . F 3 HOH 71 302 71 HOH HOH A . F 3 HOH 72 303 72 HOH HOH A . F 3 HOH 73 304 73 HOH HOH A . F 3 HOH 74 305 74 HOH HOH A . F 3 HOH 75 306 75 HOH HOH A . F 3 HOH 76 307 76 HOH HOH A . F 3 HOH 77 308 77 HOH HOH A . F 3 HOH 78 309 78 HOH HOH A . F 3 HOH 79 310 79 HOH HOH A . F 3 HOH 80 311 80 HOH HOH A . F 3 HOH 81 312 81 HOH HOH A . F 3 HOH 82 313 82 HOH HOH A . F 3 HOH 83 314 83 HOH HOH A . F 3 HOH 84 315 84 HOH HOH A . F 3 HOH 85 316 85 HOH HOH A . F 3 HOH 86 317 86 HOH HOH A . F 3 HOH 87 318 87 HOH HOH A . F 3 HOH 88 319 88 HOH HOH A . F 3 HOH 89 320 89 HOH HOH A . F 3 HOH 90 321 90 HOH HOH A . F 3 HOH 91 322 91 HOH HOH A . F 3 HOH 92 323 92 HOH HOH A . F 3 HOH 93 324 93 HOH HOH A . F 3 HOH 94 325 94 HOH HOH A . F 3 HOH 95 326 95 HOH HOH A . F 3 HOH 96 327 96 HOH HOH A . F 3 HOH 97 328 97 HOH HOH A . F 3 HOH 98 329 98 HOH HOH A . F 3 HOH 99 330 99 HOH HOH A . F 3 HOH 100 331 100 HOH HOH A . F 3 HOH 101 332 101 HOH HOH A . F 3 HOH 102 333 102 HOH HOH A . F 3 HOH 103 334 103 HOH HOH A . F 3 HOH 104 335 104 HOH HOH A . F 3 HOH 105 336 105 HOH HOH A . F 3 HOH 106 337 106 HOH HOH A . F 3 HOH 107 338 107 HOH HOH A . F 3 HOH 108 339 108 HOH HOH A . F 3 HOH 109 340 109 HOH HOH A . F 3 HOH 110 341 110 HOH HOH A . F 3 HOH 111 342 111 HOH HOH A . F 3 HOH 112 343 112 HOH HOH A . F 3 HOH 113 344 113 HOH HOH A . F 3 HOH 114 345 114 HOH HOH A . F 3 HOH 115 346 115 HOH HOH A . F 3 HOH 116 347 116 HOH HOH A . F 3 HOH 117 348 117 HOH HOH A . F 3 HOH 118 349 118 HOH HOH A . F 3 HOH 119 350 119 HOH HOH A . F 3 HOH 120 351 120 HOH HOH A . F 3 HOH 121 352 121 HOH HOH A . F 3 HOH 122 353 122 HOH HOH A . F 3 HOH 123 354 123 HOH HOH A . F 3 HOH 124 355 124 HOH HOH A . F 3 HOH 125 356 125 HOH HOH A . F 3 HOH 126 357 126 HOH HOH A . F 3 HOH 127 358 127 HOH HOH A . F 3 HOH 128 359 128 HOH HOH A . F 3 HOH 129 360 129 HOH HOH A . F 3 HOH 130 361 130 HOH HOH A . F 3 HOH 131 362 131 HOH HOH A . F 3 HOH 132 363 132 HOH HOH A . F 3 HOH 133 364 133 HOH HOH A . F 3 HOH 134 365 134 HOH HOH A . F 3 HOH 135 366 135 HOH HOH A . F 3 HOH 136 367 136 HOH HOH A . F 3 HOH 137 368 137 HOH HOH A . F 3 HOH 138 369 138 HOH HOH A . F 3 HOH 139 370 139 HOH HOH A . F 3 HOH 140 371 140 HOH HOH A . F 3 HOH 141 372 141 HOH HOH A . F 3 HOH 142 373 142 HOH HOH A . F 3 HOH 143 374 143 HOH HOH A . F 3 HOH 144 375 144 HOH HOH A . F 3 HOH 145 376 145 HOH HOH A . F 3 HOH 146 377 146 HOH HOH A . F 3 HOH 147 378 147 HOH HOH A . F 3 HOH 148 379 148 HOH HOH A . F 3 HOH 149 380 149 HOH HOH A . F 3 HOH 150 381 150 HOH HOH A . F 3 HOH 151 382 151 HOH HOH A . F 3 HOH 152 383 152 HOH HOH A . F 3 HOH 153 384 153 HOH HOH A . F 3 HOH 154 385 154 HOH HOH A . F 3 HOH 155 386 155 HOH HOH A . F 3 HOH 156 387 156 HOH HOH A . F 3 HOH 157 388 157 HOH HOH A . F 3 HOH 158 389 158 HOH HOH A . F 3 HOH 159 390 159 HOH HOH A . F 3 HOH 160 391 160 HOH HOH A . F 3 HOH 161 392 161 HOH HOH A . F 3 HOH 162 393 162 HOH HOH A . F 3 HOH 163 394 163 HOH HOH A . F 3 HOH 164 395 164 HOH HOH A . F 3 HOH 165 396 165 HOH HOH A . F 3 HOH 166 397 166 HOH HOH A . F 3 HOH 167 398 167 HOH HOH A . F 3 HOH 168 399 168 HOH HOH A . F 3 HOH 169 400 169 HOH HOH A . F 3 HOH 170 401 170 HOH HOH A . F 3 HOH 171 402 171 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASES phasing . ? 2 CNS refinement 1.2 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 3KYF _cell.length_a 112.700 _cell.length_b 41.304 _cell.length_c 61.590 _cell.angle_alpha 90.00 _cell.angle_beta 92.21 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3KYF _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3KYF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.70 _exptl_crystal.density_percent_sol 54.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl, pH 8.5, 25% PEG 3350, 0.2M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 200 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PAL/PLS BEAMLINE 4A' _diffrn_source.pdbx_synchrotron_site PAL/PLS _diffrn_source.pdbx_synchrotron_beamline 4A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 3KYF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.10 _reflns.number_obs 15600 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 12.4 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 3KYF _refine.ls_number_reflns_obs 15505 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 200903.88 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33.01 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 92.2 _refine.ls_R_factor_obs 0.194 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.194 _refine.ls_R_factor_R_free 0.244 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 1573 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 34.3 _refine.aniso_B[1][1] -4.75 _refine.aniso_B[2][2] 2.98 _refine.aniso_B[3][3] 1.77 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 7.15 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.4 _refine.solvent_model_param_bsol 70.5705 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'BULK SOLVENT MODEL USED' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3KYF _refine_analyze.Luzzati_coordinate_error_obs 0.24 _refine_analyze.Luzzati_sigma_a_obs 0.28 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.32 _refine_analyze.Luzzati_sigma_a_free 0.35 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1869 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 92 _refine_hist.number_atoms_solvent 171 _refine_hist.number_atoms_total 2132 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 33.01 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 24.8 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.82 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 2.16 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 3.16 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 3.50 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 5.08 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1771 _refine_ls_shell.R_factor_R_work 0.256 _refine_ls_shell.percent_reflns_obs 72.6 _refine_ls_shell.R_factor_R_free 0.297 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 11.6 _refine_ls_shell.number_reflns_R_free 233 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 ks_5gp.param ks_5gp.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' 5 dna-rna.param dna-rna.top # _database_PDB_matrix.entry_id 3KYF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3KYF _struct.title 'Crystal structure of P4397 complexed with c-di-GMP' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3KYF _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.text 'c-di-GMP, PilZ domain, PP4397, VCA0042, UNKNOWN FUNCTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q88EQ6_PSEPK _struct_ref.pdbx_db_accession Q88EQ6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PQPPKVLSTPLEIAANLRQLQESHDPLIITFHDRSHRFQSYVVHVDRESNTLALDEMIPRDGEKFIENGEHFRVEGFHDG VRIAWECDHALKISEVDGHRCYSGPLPQEVTYHQRRNAFRAALKLSQLVDIILDGAHLKGNGAMRGKLLDISATGCKLRF EGNVEDRLQLGQVYERFKAGNPLGLVDTMVELRHLHYEERINTTFAGVRFHNLSGQAQRKIESFVYQLQRE ; _struct_ref.pdbx_align_begin 8 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3KYF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 231 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q88EQ6 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 238 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 8 _struct_ref_seq.pdbx_auth_seq_align_end 238 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 2820 ? 2 MORE -1 ? 2 'SSA (A^2)' 24460 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F 2 1,2 A,B,C,D,E,F # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 9 ? SER A 23 ? THR A 16 SER A 30 1 ? 15 HELX_P HELX_P2 2 PRO A 59 ? ASP A 61 ? PRO A 66 ASP A 68 5 ? 3 HELX_P HELX_P3 3 GLY A 62 ? ASN A 68 ? GLY A 69 ASN A 75 1 ? 7 HELX_P HELX_P4 4 LYS A 124 ? LEU A 128 ? LYS A 131 LEU A 135 5 ? 5 HELX_P HELX_P5 5 VAL A 164 ? LEU A 168 ? VAL A 171 LEU A 175 5 ? 5 HELX_P HELX_P6 6 GLU A 199 ? ILE A 201 ? GLU A 206 ILE A 208 5 ? 3 HELX_P HELX_P7 7 SER A 214 ? GLU A 231 ? SER A 221 GLU A 238 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? B 5GP . P ? ? ? 1_555 C 5GP . "O3'" ? ? A 5GP 501 A 5GP 502 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale one ? B 5GP . "O3'" ? ? ? 1_555 C 5GP . P ? ? A 5GP 501 A 5GP 502 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale3 covale one ? D 5GP . P ? ? ? 1_555 E 5GP . "O3'" ? ? A 5GP 503 A 5GP 504 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale4 covale one ? D 5GP . "O3'" ? ? ? 1_555 E 5GP . P ? ? A 5GP 503 A 5GP 504 1_555 ? ? ? ? ? ? ? 1.600 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 58 A . ? ILE 65 A PRO 59 A ? PRO 66 A 1 0.10 2 ASN 181 A . ? ASN 188 A PRO 182 A ? PRO 189 A 1 0.14 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 4 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel C 5 6 ? anti-parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 5 ? LEU A 7 ? LYS A 12 LEU A 14 A 2 VAL A 110 ? HIS A 113 ? VAL A 117 HIS A 120 A 3 VAL A 81 ? CYS A 87 ? VAL A 88 CYS A 94 A 4 PHE A 72 ? HIS A 78 ? PHE A 79 HIS A 85 A 5 LEU A 27 ? PHE A 31 ? LEU A 34 PHE A 38 A 6 ARG A 37 ? SER A 40 ? ARG A 44 SER A 47 B 1 VAL A 42 ? ASP A 46 ? VAL A 49 ASP A 53 B 2 THR A 51 ? ASP A 55 ? THR A 58 ASP A 62 B 3 HIS A 99 ? GLY A 104 ? HIS A 106 GLY A 111 B 4 LYS A 92 ? VAL A 96 ? LYS A 99 VAL A 103 C 1 ALA A 121 ? ALA A 122 ? ALA A 128 ALA A 129 C 2 MET A 144 ? ILE A 151 ? MET A 151 ILE A 158 C 3 GLY A 155 ? GLU A 161 ? GLY A 162 GLU A 168 C 4 THR A 203 ? HIS A 211 ? THR A 210 HIS A 218 C 5 LEU A 185 ? GLU A 198 ? LEU A 192 GLU A 205 C 6 VAL A 173 ? ALA A 179 ? VAL A 180 ALA A 186 C 7 ASP A 130 ? LEU A 133 ? ASP A 137 LEU A 140 C 8 MET A 144 ? ILE A 151 ? MET A 151 ILE A 158 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 5 ? N LYS A 12 O TYR A 112 ? O TYR A 119 A 2 3 O THR A 111 ? O THR A 118 N ALA A 84 ? N ALA A 91 A 3 4 O ILE A 83 ? O ILE A 90 N GLY A 76 ? N GLY A 83 A 4 5 O GLU A 75 ? O GLU A 82 N ILE A 28 ? N ILE A 35 A 5 6 N ILE A 29 ? N ILE A 36 O PHE A 38 ? O PHE A 45 B 1 2 N VAL A 43 ? N VAL A 50 O ALA A 53 ? O ALA A 60 B 2 3 N LEU A 54 ? N LEU A 61 O TYR A 102 ? O TYR A 109 B 3 4 O HIS A 99 ? O HIS A 106 N VAL A 96 ? N VAL A 103 C 1 2 N ALA A 121 ? N ALA A 128 O ILE A 151 ? O ILE A 158 C 2 3 N LEU A 149 ? N LEU A 156 O LYS A 157 ? O LYS A 164 C 3 4 N LEU A 158 ? N LEU A 165 O ALA A 206 ? O ALA A 213 C 4 5 O GLY A 207 ? O GLY A 214 N ARG A 193 ? N ARG A 200 C 5 6 O VAL A 190 ? O VAL A 197 N TYR A 174 ? N TYR A 181 C 6 7 O LYS A 178 ? O LYS A 185 N ILE A 132 ? N ILE A 139 C 7 8 N LEU A 133 ? N LEU A 140 O MET A 144 ? O MET A 151 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 5GP 501 ? 10 'BINDING SITE FOR RESIDUE 5GP A 501' AC2 Software A 5GP 502 ? 10 'BINDING SITE FOR RESIDUE 5GP A 502' AC3 Software A 5GP 503 ? 16 'BINDING SITE FOR RESIDUE 5GP A 503' AC4 Software A 5GP 504 ? 10 'BINDING SITE FOR RESIDUE 5GP A 504' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 10 ARG A 116 ? ARG A 123 . ? 1_555 ? 2 AC1 10 ARG A 120 ? ARG A 127 . ? 1_555 ? 3 AC1 10 HIS A 194 ? HIS A 201 . ? 1_555 ? 4 AC1 10 HOH F . ? HOH A 271 . ? 1_555 ? 5 AC1 10 HOH F . ? HOH A 274 . ? 1_555 ? 6 AC1 10 HOH F . ? HOH A 288 . ? 1_555 ? 7 AC1 10 HOH F . ? HOH A 325 . ? 1_555 ? 8 AC1 10 5GP C . ? 5GP A 502 . ? 1_555 ? 9 AC1 10 5GP D . ? 5GP A 503 . ? 1_555 ? 10 AC1 10 5GP E . ? 5GP A 504 . ? 1_555 ? 11 AC2 10 PHE A 77 ? PHE A 84 . ? 1_555 ? 12 AC2 10 GLY A 80 ? GLY A 87 . ? 1_555 ? 13 AC2 10 GLN A 114 ? GLN A 121 . ? 1_555 ? 14 AC2 10 ARG A 115 ? ARG A 122 . ? 1_555 ? 15 AC2 10 ARG A 116 ? ARG A 123 . ? 1_555 ? 16 AC2 10 HOH F . ? HOH A 300 . ? 1_555 ? 17 AC2 10 HOH F . ? HOH A 319 . ? 1_555 ? 18 AC2 10 HOH F . ? HOH A 322 . ? 2_555 ? 19 AC2 10 5GP B . ? 5GP A 501 . ? 1_555 ? 20 AC2 10 5GP E . ? 5GP A 504 . ? 1_555 ? 21 AC3 16 ARG A 120 ? ARG A 127 . ? 1_555 ? 22 AC3 16 ASP A 150 ? ASP A 157 . ? 1_555 ? 23 AC3 16 SER A 152 ? SER A 159 . ? 1_555 ? 24 AC3 16 THR A 154 ? THR A 161 . ? 1_555 ? 25 AC3 16 GLY A 155 ? GLY A 162 . ? 1_555 ? 26 AC3 16 CYS A 156 ? CYS A 163 . ? 1_555 ? 27 AC3 16 LYS A 157 ? LYS A 164 . ? 1_555 ? 28 AC3 16 ARG A 193 ? ARG A 200 . ? 1_555 ? 29 AC3 16 HIS A 194 ? HIS A 201 . ? 1_555 ? 30 AC3 16 GLY A 207 ? GLY A 214 . ? 1_555 ? 31 AC3 16 VAL A 208 ? VAL A 215 . ? 1_555 ? 32 AC3 16 ARG A 209 ? ARG A 216 . ? 1_555 ? 33 AC3 16 HOH F . ? HOH A 271 . ? 1_555 ? 34 AC3 16 HOH F . ? HOH A 394 . ? 1_555 ? 35 AC3 16 5GP B . ? 5GP A 501 . ? 1_555 ? 36 AC3 16 5GP E . ? 5GP A 504 . ? 1_555 ? 37 AC4 10 ARG A 115 ? ARG A 122 . ? 1_555 ? 38 AC4 10 ARG A 116 ? ARG A 123 . ? 1_555 ? 39 AC4 10 ASN A 117 ? ASN A 124 . ? 1_555 ? 40 AC4 10 ARG A 120 ? ARG A 127 . ? 1_555 ? 41 AC4 10 HOH F . ? HOH A 250 . ? 1_555 ? 42 AC4 10 HOH F . ? HOH A 272 . ? 1_555 ? 43 AC4 10 HOH F . ? HOH A 379 . ? 1_555 ? 44 AC4 10 5GP B . ? 5GP A 501 . ? 1_555 ? 45 AC4 10 5GP C . ? 5GP A 502 . ? 1_555 ? 46 AC4 10 5GP D . ? 5GP A 503 . ? 1_555 ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLN _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 9 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 64.90 _pdbx_validate_torsion.psi 109.72 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5GP P P N N 1 5GP O1P O N N 2 5GP O2P O N N 3 5GP O3P O N N 4 5GP "O5'" O N N 5 5GP "C5'" C N N 6 5GP "C4'" C N R 7 5GP "O4'" O N N 8 5GP "C3'" C N S 9 5GP "O3'" O N N 10 5GP "C2'" C N R 11 5GP "O2'" O N N 12 5GP "C1'" C N R 13 5GP N9 N Y N 14 5GP C8 C Y N 15 5GP N7 N Y N 16 5GP C5 C Y N 17 5GP C6 C N N 18 5GP O6 O N N 19 5GP N1 N N N 20 5GP C2 C N N 21 5GP N2 N N N 22 5GP N3 N N N 23 5GP C4 C Y N 24 5GP HOP2 H N N 25 5GP HOP3 H N N 26 5GP "H5'1" H N N 27 5GP "H5'2" H N N 28 5GP "H4'" H N N 29 5GP "H3'" H N N 30 5GP "HO3'" H N N 31 5GP "H2'" H N N 32 5GP "HO2'" H N N 33 5GP "H1'" H N N 34 5GP H8 H N N 35 5GP HN1 H N N 36 5GP HN21 H N N 37 5GP HN22 H N N 38 ALA N N N N 39 ALA CA C N S 40 ALA C C N N 41 ALA O O N N 42 ALA CB C N N 43 ALA OXT O N N 44 ALA H H N N 45 ALA H2 H N N 46 ALA HA H N N 47 ALA HB1 H N N 48 ALA HB2 H N N 49 ALA HB3 H N N 50 ALA HXT H N N 51 ARG N N N N 52 ARG CA C N S 53 ARG C C N N 54 ARG O O N N 55 ARG CB C N N 56 ARG CG C N N 57 ARG CD C N N 58 ARG NE N N N 59 ARG CZ C N N 60 ARG NH1 N N N 61 ARG NH2 N N N 62 ARG OXT O N N 63 ARG H H N N 64 ARG H2 H N N 65 ARG HA H N N 66 ARG HB2 H N N 67 ARG HB3 H N N 68 ARG HG2 H N N 69 ARG HG3 H N N 70 ARG HD2 H N N 71 ARG HD3 H N N 72 ARG HE H N N 73 ARG HH11 H N N 74 ARG HH12 H N N 75 ARG HH21 H N N 76 ARG HH22 H N N 77 ARG HXT H N N 78 ASN N N N N 79 ASN CA C N S 80 ASN C C N N 81 ASN O O N N 82 ASN CB C N N 83 ASN CG C N N 84 ASN OD1 O N N 85 ASN ND2 N N N 86 ASN OXT O N N 87 ASN H H N N 88 ASN H2 H N N 89 ASN HA H N N 90 ASN HB2 H N N 91 ASN HB3 H N N 92 ASN HD21 H N N 93 ASN HD22 H N N 94 ASN HXT H N N 95 ASP N N N N 96 ASP CA C N S 97 ASP C C N N 98 ASP O O N N 99 ASP CB C N N 100 ASP CG C N N 101 ASP OD1 O N N 102 ASP OD2 O N N 103 ASP OXT O N N 104 ASP H H N N 105 ASP H2 H N N 106 ASP HA H N N 107 ASP HB2 H N N 108 ASP HB3 H N N 109 ASP HD2 H N N 110 ASP HXT H N N 111 CYS N N N N 112 CYS CA C N R 113 CYS C C N N 114 CYS O O N N 115 CYS CB C N N 116 CYS SG S N N 117 CYS OXT O N N 118 CYS H H N N 119 CYS H2 H N N 120 CYS HA H N N 121 CYS HB2 H N N 122 CYS HB3 H N N 123 CYS HG H N N 124 CYS HXT H N N 125 GLN N N N N 126 GLN CA C N S 127 GLN C C N N 128 GLN O O N N 129 GLN CB C N N 130 GLN CG C N N 131 GLN CD C N N 132 GLN OE1 O N N 133 GLN NE2 N N N 134 GLN OXT O N N 135 GLN H H N N 136 GLN H2 H N N 137 GLN HA H N N 138 GLN HB2 H N N 139 GLN HB3 H N N 140 GLN HG2 H N N 141 GLN HG3 H N N 142 GLN HE21 H N N 143 GLN HE22 H N N 144 GLN HXT H N N 145 GLU N N N N 146 GLU CA C N S 147 GLU C C N N 148 GLU O O N N 149 GLU CB C N N 150 GLU CG C N N 151 GLU CD C N N 152 GLU OE1 O N N 153 GLU OE2 O N N 154 GLU OXT O N N 155 GLU H H N N 156 GLU H2 H N N 157 GLU HA H N N 158 GLU HB2 H N N 159 GLU HB3 H N N 160 GLU HG2 H N N 161 GLU HG3 H N N 162 GLU HE2 H N N 163 GLU HXT H N N 164 GLY N N N N 165 GLY CA C N N 166 GLY C C N N 167 GLY O O N N 168 GLY OXT O N N 169 GLY H H N N 170 GLY H2 H N N 171 GLY HA2 H N N 172 GLY HA3 H N N 173 GLY HXT H N N 174 HIS N N N N 175 HIS CA C N S 176 HIS C C N N 177 HIS O O N N 178 HIS CB C N N 179 HIS CG C Y N 180 HIS ND1 N Y N 181 HIS CD2 C Y N 182 HIS CE1 C Y N 183 HIS NE2 N Y N 184 HIS OXT O N N 185 HIS H H N N 186 HIS H2 H N N 187 HIS HA H N N 188 HIS HB2 H N N 189 HIS HB3 H N N 190 HIS HD1 H N N 191 HIS HD2 H N N 192 HIS HE1 H N N 193 HIS HE2 H N N 194 HIS HXT H N N 195 HOH O O N N 196 HOH H1 H N N 197 HOH H2 H N N 198 ILE N N N N 199 ILE CA C N S 200 ILE C C N N 201 ILE O O N N 202 ILE CB C N S 203 ILE CG1 C N N 204 ILE CG2 C N N 205 ILE CD1 C N N 206 ILE OXT O N N 207 ILE H H N N 208 ILE H2 H N N 209 ILE HA H N N 210 ILE HB H N N 211 ILE HG12 H N N 212 ILE HG13 H N N 213 ILE HG21 H N N 214 ILE HG22 H N N 215 ILE HG23 H N N 216 ILE HD11 H N N 217 ILE HD12 H N N 218 ILE HD13 H N N 219 ILE HXT H N N 220 LEU N N N N 221 LEU CA C N S 222 LEU C C N N 223 LEU O O N N 224 LEU CB C N N 225 LEU CG C N N 226 LEU CD1 C N N 227 LEU CD2 C N N 228 LEU OXT O N N 229 LEU H H N N 230 LEU H2 H N N 231 LEU HA H N N 232 LEU HB2 H N N 233 LEU HB3 H N N 234 LEU HG H N N 235 LEU HD11 H N N 236 LEU HD12 H N N 237 LEU HD13 H N N 238 LEU HD21 H N N 239 LEU HD22 H N N 240 LEU HD23 H N N 241 LEU HXT H N N 242 LYS N N N N 243 LYS CA C N S 244 LYS C C N N 245 LYS O O N N 246 LYS CB C N N 247 LYS CG C N N 248 LYS CD C N N 249 LYS CE C N N 250 LYS NZ N N N 251 LYS OXT O N N 252 LYS H H N N 253 LYS H2 H N N 254 LYS HA H N N 255 LYS HB2 H N N 256 LYS HB3 H N N 257 LYS HG2 H N N 258 LYS HG3 H N N 259 LYS HD2 H N N 260 LYS HD3 H N N 261 LYS HE2 H N N 262 LYS HE3 H N N 263 LYS HZ1 H N N 264 LYS HZ2 H N N 265 LYS HZ3 H N N 266 LYS HXT H N N 267 MET N N N N 268 MET CA C N S 269 MET C C N N 270 MET O O N N 271 MET CB C N N 272 MET CG C N N 273 MET SD S N N 274 MET CE C N N 275 MET OXT O N N 276 MET H H N N 277 MET H2 H N N 278 MET HA H N N 279 MET HB2 H N N 280 MET HB3 H N N 281 MET HG2 H N N 282 MET HG3 H N N 283 MET HE1 H N N 284 MET HE2 H N N 285 MET HE3 H N N 286 MET HXT H N N 287 PHE N N N N 288 PHE CA C N S 289 PHE C C N N 290 PHE O O N N 291 PHE CB C N N 292 PHE CG C Y N 293 PHE CD1 C Y N 294 PHE CD2 C Y N 295 PHE CE1 C Y N 296 PHE CE2 C Y N 297 PHE CZ C Y N 298 PHE OXT O N N 299 PHE H H N N 300 PHE H2 H N N 301 PHE HA H N N 302 PHE HB2 H N N 303 PHE HB3 H N N 304 PHE HD1 H N N 305 PHE HD2 H N N 306 PHE HE1 H N N 307 PHE HE2 H N N 308 PHE HZ H N N 309 PHE HXT H N N 310 PRO N N N N 311 PRO CA C N S 312 PRO C C N N 313 PRO O O N N 314 PRO CB C N N 315 PRO CG C N N 316 PRO CD C N N 317 PRO OXT O N N 318 PRO H H N N 319 PRO HA H N N 320 PRO HB2 H N N 321 PRO HB3 H N N 322 PRO HG2 H N N 323 PRO HG3 H N N 324 PRO HD2 H N N 325 PRO HD3 H N N 326 PRO HXT H N N 327 SER N N N N 328 SER CA C N S 329 SER C C N N 330 SER O O N N 331 SER CB C N N 332 SER OG O N N 333 SER OXT O N N 334 SER H H N N 335 SER H2 H N N 336 SER HA H N N 337 SER HB2 H N N 338 SER HB3 H N N 339 SER HG H N N 340 SER HXT H N N 341 THR N N N N 342 THR CA C N S 343 THR C C N N 344 THR O O N N 345 THR CB C N R 346 THR OG1 O N N 347 THR CG2 C N N 348 THR OXT O N N 349 THR H H N N 350 THR H2 H N N 351 THR HA H N N 352 THR HB H N N 353 THR HG1 H N N 354 THR HG21 H N N 355 THR HG22 H N N 356 THR HG23 H N N 357 THR HXT H N N 358 TRP N N N N 359 TRP CA C N S 360 TRP C C N N 361 TRP O O N N 362 TRP CB C N N 363 TRP CG C Y N 364 TRP CD1 C Y N 365 TRP CD2 C Y N 366 TRP NE1 N Y N 367 TRP CE2 C Y N 368 TRP CE3 C Y N 369 TRP CZ2 C Y N 370 TRP CZ3 C Y N 371 TRP CH2 C Y N 372 TRP OXT O N N 373 TRP H H N N 374 TRP H2 H N N 375 TRP HA H N N 376 TRP HB2 H N N 377 TRP HB3 H N N 378 TRP HD1 H N N 379 TRP HE1 H N N 380 TRP HE3 H N N 381 TRP HZ2 H N N 382 TRP HZ3 H N N 383 TRP HH2 H N N 384 TRP HXT H N N 385 TYR N N N N 386 TYR CA C N S 387 TYR C C N N 388 TYR O O N N 389 TYR CB C N N 390 TYR CG C Y N 391 TYR CD1 C Y N 392 TYR CD2 C Y N 393 TYR CE1 C Y N 394 TYR CE2 C Y N 395 TYR CZ C Y N 396 TYR OH O N N 397 TYR OXT O N N 398 TYR H H N N 399 TYR H2 H N N 400 TYR HA H N N 401 TYR HB2 H N N 402 TYR HB3 H N N 403 TYR HD1 H N N 404 TYR HD2 H N N 405 TYR HE1 H N N 406 TYR HE2 H N N 407 TYR HH H N N 408 TYR HXT H N N 409 VAL N N N N 410 VAL CA C N S 411 VAL C C N N 412 VAL O O N N 413 VAL CB C N N 414 VAL CG1 C N N 415 VAL CG2 C N N 416 VAL OXT O N N 417 VAL H H N N 418 VAL H2 H N N 419 VAL HA H N N 420 VAL HB H N N 421 VAL HG11 H N N 422 VAL HG12 H N N 423 VAL HG13 H N N 424 VAL HG21 H N N 425 VAL HG22 H N N 426 VAL HG23 H N N 427 VAL HXT H N N 428 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5GP P O1P doub N N 1 5GP P O2P sing N N 2 5GP P O3P sing N N 3 5GP P "O5'" sing N N 4 5GP O2P HOP2 sing N N 5 5GP O3P HOP3 sing N N 6 5GP "O5'" "C5'" sing N N 7 5GP "C5'" "C4'" sing N N 8 5GP "C5'" "H5'1" sing N N 9 5GP "C5'" "H5'2" sing N N 10 5GP "C4'" "O4'" sing N N 11 5GP "C4'" "C3'" sing N N 12 5GP "C4'" "H4'" sing N N 13 5GP "O4'" "C1'" sing N N 14 5GP "C3'" "O3'" sing N N 15 5GP "C3'" "C2'" sing N N 16 5GP "C3'" "H3'" sing N N 17 5GP "O3'" "HO3'" sing N N 18 5GP "C2'" "O2'" sing N N 19 5GP "C2'" "C1'" sing N N 20 5GP "C2'" "H2'" sing N N 21 5GP "O2'" "HO2'" sing N N 22 5GP "C1'" N9 sing N N 23 5GP "C1'" "H1'" sing N N 24 5GP N9 C8 sing Y N 25 5GP N9 C4 sing Y N 26 5GP C8 N7 doub Y N 27 5GP C8 H8 sing N N 28 5GP N7 C5 sing Y N 29 5GP C5 C6 sing N N 30 5GP C5 C4 doub Y N 31 5GP C6 O6 doub N N 32 5GP C6 N1 sing N N 33 5GP N1 C2 sing N N 34 5GP N1 HN1 sing N N 35 5GP C2 N2 sing N N 36 5GP C2 N3 doub N N 37 5GP N2 HN21 sing N N 38 5GP N2 HN22 sing N N 39 5GP N3 C4 sing N N 40 ALA N CA sing N N 41 ALA N H sing N N 42 ALA N H2 sing N N 43 ALA CA C sing N N 44 ALA CA CB sing N N 45 ALA CA HA sing N N 46 ALA C O doub N N 47 ALA C OXT sing N N 48 ALA CB HB1 sing N N 49 ALA CB HB2 sing N N 50 ALA CB HB3 sing N N 51 ALA OXT HXT sing N N 52 ARG N CA sing N N 53 ARG N H sing N N 54 ARG N H2 sing N N 55 ARG CA C sing N N 56 ARG CA CB sing N N 57 ARG CA HA sing N N 58 ARG C O doub N N 59 ARG C OXT sing N N 60 ARG CB CG sing N N 61 ARG CB HB2 sing N N 62 ARG CB HB3 sing N N 63 ARG CG CD sing N N 64 ARG CG HG2 sing N N 65 ARG CG HG3 sing N N 66 ARG CD NE sing N N 67 ARG CD HD2 sing N N 68 ARG CD HD3 sing N N 69 ARG NE CZ sing N N 70 ARG NE HE sing N N 71 ARG CZ NH1 sing N N 72 ARG CZ NH2 doub N N 73 ARG NH1 HH11 sing N N 74 ARG NH1 HH12 sing N N 75 ARG NH2 HH21 sing N N 76 ARG NH2 HH22 sing N N 77 ARG OXT HXT sing N N 78 ASN N CA sing N N 79 ASN N H sing N N 80 ASN N H2 sing N N 81 ASN CA C sing N N 82 ASN CA CB sing N N 83 ASN CA HA sing N N 84 ASN C O doub N N 85 ASN C OXT sing N N 86 ASN CB CG sing N N 87 ASN CB HB2 sing N N 88 ASN CB HB3 sing N N 89 ASN CG OD1 doub N N 90 ASN CG ND2 sing N N 91 ASN ND2 HD21 sing N N 92 ASN ND2 HD22 sing N N 93 ASN OXT HXT sing N N 94 ASP N CA sing N N 95 ASP N H sing N N 96 ASP N H2 sing N N 97 ASP CA C sing N N 98 ASP CA CB sing N N 99 ASP CA HA sing N N 100 ASP C O doub N N 101 ASP C OXT sing N N 102 ASP CB CG sing N N 103 ASP CB HB2 sing N N 104 ASP CB HB3 sing N N 105 ASP CG OD1 doub N N 106 ASP CG OD2 sing N N 107 ASP OD2 HD2 sing N N 108 ASP OXT HXT sing N N 109 CYS N CA sing N N 110 CYS N H sing N N 111 CYS N H2 sing N N 112 CYS CA C sing N N 113 CYS CA CB sing N N 114 CYS CA HA sing N N 115 CYS C O doub N N 116 CYS C OXT sing N N 117 CYS CB SG sing N N 118 CYS CB HB2 sing N N 119 CYS CB HB3 sing N N 120 CYS SG HG sing N N 121 CYS OXT HXT sing N N 122 GLN N CA sing N N 123 GLN N H sing N N 124 GLN N H2 sing N N 125 GLN CA C sing N N 126 GLN CA CB sing N N 127 GLN CA HA sing N N 128 GLN C O doub N N 129 GLN C OXT sing N N 130 GLN CB CG sing N N 131 GLN CB HB2 sing N N 132 GLN CB HB3 sing N N 133 GLN CG CD sing N N 134 GLN CG HG2 sing N N 135 GLN CG HG3 sing N N 136 GLN CD OE1 doub N N 137 GLN CD NE2 sing N N 138 GLN NE2 HE21 sing N N 139 GLN NE2 HE22 sing N N 140 GLN OXT HXT sing N N 141 GLU N CA sing N N 142 GLU N H sing N N 143 GLU N H2 sing N N 144 GLU CA C sing N N 145 GLU CA CB sing N N 146 GLU CA HA sing N N 147 GLU C O doub N N 148 GLU C OXT sing N N 149 GLU CB CG sing N N 150 GLU CB HB2 sing N N 151 GLU CB HB3 sing N N 152 GLU CG CD sing N N 153 GLU CG HG2 sing N N 154 GLU CG HG3 sing N N 155 GLU CD OE1 doub N N 156 GLU CD OE2 sing N N 157 GLU OE2 HE2 sing N N 158 GLU OXT HXT sing N N 159 GLY N CA sing N N 160 GLY N H sing N N 161 GLY N H2 sing N N 162 GLY CA C sing N N 163 GLY CA HA2 sing N N 164 GLY CA HA3 sing N N 165 GLY C O doub N N 166 GLY C OXT sing N N 167 GLY OXT HXT sing N N 168 HIS N CA sing N N 169 HIS N H sing N N 170 HIS N H2 sing N N 171 HIS CA C sing N N 172 HIS CA CB sing N N 173 HIS CA HA sing N N 174 HIS C O doub N N 175 HIS C OXT sing N N 176 HIS CB CG sing N N 177 HIS CB HB2 sing N N 178 HIS CB HB3 sing N N 179 HIS CG ND1 sing Y N 180 HIS CG CD2 doub Y N 181 HIS ND1 CE1 doub Y N 182 HIS ND1 HD1 sing N N 183 HIS CD2 NE2 sing Y N 184 HIS CD2 HD2 sing N N 185 HIS CE1 NE2 sing Y N 186 HIS CE1 HE1 sing N N 187 HIS NE2 HE2 sing N N 188 HIS OXT HXT sing N N 189 HOH O H1 sing N N 190 HOH O H2 sing N N 191 ILE N CA sing N N 192 ILE N H sing N N 193 ILE N H2 sing N N 194 ILE CA C sing N N 195 ILE CA CB sing N N 196 ILE CA HA sing N N 197 ILE C O doub N N 198 ILE C OXT sing N N 199 ILE CB CG1 sing N N 200 ILE CB CG2 sing N N 201 ILE CB HB sing N N 202 ILE CG1 CD1 sing N N 203 ILE CG1 HG12 sing N N 204 ILE CG1 HG13 sing N N 205 ILE CG2 HG21 sing N N 206 ILE CG2 HG22 sing N N 207 ILE CG2 HG23 sing N N 208 ILE CD1 HD11 sing N N 209 ILE CD1 HD12 sing N N 210 ILE CD1 HD13 sing N N 211 ILE OXT HXT sing N N 212 LEU N CA sing N N 213 LEU N H sing N N 214 LEU N H2 sing N N 215 LEU CA C sing N N 216 LEU CA CB sing N N 217 LEU CA HA sing N N 218 LEU C O doub N N 219 LEU C OXT sing N N 220 LEU CB CG sing N N 221 LEU CB HB2 sing N N 222 LEU CB HB3 sing N N 223 LEU CG CD1 sing N N 224 LEU CG CD2 sing N N 225 LEU CG HG sing N N 226 LEU CD1 HD11 sing N N 227 LEU CD1 HD12 sing N N 228 LEU CD1 HD13 sing N N 229 LEU CD2 HD21 sing N N 230 LEU CD2 HD22 sing N N 231 LEU CD2 HD23 sing N N 232 LEU OXT HXT sing N N 233 LYS N CA sing N N 234 LYS N H sing N N 235 LYS N H2 sing N N 236 LYS CA C sing N N 237 LYS CA CB sing N N 238 LYS CA HA sing N N 239 LYS C O doub N N 240 LYS C OXT sing N N 241 LYS CB CG sing N N 242 LYS CB HB2 sing N N 243 LYS CB HB3 sing N N 244 LYS CG CD sing N N 245 LYS CG HG2 sing N N 246 LYS CG HG3 sing N N 247 LYS CD CE sing N N 248 LYS CD HD2 sing N N 249 LYS CD HD3 sing N N 250 LYS CE NZ sing N N 251 LYS CE HE2 sing N N 252 LYS CE HE3 sing N N 253 LYS NZ HZ1 sing N N 254 LYS NZ HZ2 sing N N 255 LYS NZ HZ3 sing N N 256 LYS OXT HXT sing N N 257 MET N CA sing N N 258 MET N H sing N N 259 MET N H2 sing N N 260 MET CA C sing N N 261 MET CA CB sing N N 262 MET CA HA sing N N 263 MET C O doub N N 264 MET C OXT sing N N 265 MET CB CG sing N N 266 MET CB HB2 sing N N 267 MET CB HB3 sing N N 268 MET CG SD sing N N 269 MET CG HG2 sing N N 270 MET CG HG3 sing N N 271 MET SD CE sing N N 272 MET CE HE1 sing N N 273 MET CE HE2 sing N N 274 MET CE HE3 sing N N 275 MET OXT HXT sing N N 276 PHE N CA sing N N 277 PHE N H sing N N 278 PHE N H2 sing N N 279 PHE CA C sing N N 280 PHE CA CB sing N N 281 PHE CA HA sing N N 282 PHE C O doub N N 283 PHE C OXT sing N N 284 PHE CB CG sing N N 285 PHE CB HB2 sing N N 286 PHE CB HB3 sing N N 287 PHE CG CD1 doub Y N 288 PHE CG CD2 sing Y N 289 PHE CD1 CE1 sing Y N 290 PHE CD1 HD1 sing N N 291 PHE CD2 CE2 doub Y N 292 PHE CD2 HD2 sing N N 293 PHE CE1 CZ doub Y N 294 PHE CE1 HE1 sing N N 295 PHE CE2 CZ sing Y N 296 PHE CE2 HE2 sing N N 297 PHE CZ HZ sing N N 298 PHE OXT HXT sing N N 299 PRO N CA sing N N 300 PRO N CD sing N N 301 PRO N H sing N N 302 PRO CA C sing N N 303 PRO CA CB sing N N 304 PRO CA HA sing N N 305 PRO C O doub N N 306 PRO C OXT sing N N 307 PRO CB CG sing N N 308 PRO CB HB2 sing N N 309 PRO CB HB3 sing N N 310 PRO CG CD sing N N 311 PRO CG HG2 sing N N 312 PRO CG HG3 sing N N 313 PRO CD HD2 sing N N 314 PRO CD HD3 sing N N 315 PRO OXT HXT sing N N 316 SER N CA sing N N 317 SER N H sing N N 318 SER N H2 sing N N 319 SER CA C sing N N 320 SER CA CB sing N N 321 SER CA HA sing N N 322 SER C O doub N N 323 SER C OXT sing N N 324 SER CB OG sing N N 325 SER CB HB2 sing N N 326 SER CB HB3 sing N N 327 SER OG HG sing N N 328 SER OXT HXT sing N N 329 THR N CA sing N N 330 THR N H sing N N 331 THR N H2 sing N N 332 THR CA C sing N N 333 THR CA CB sing N N 334 THR CA HA sing N N 335 THR C O doub N N 336 THR C OXT sing N N 337 THR CB OG1 sing N N 338 THR CB CG2 sing N N 339 THR CB HB sing N N 340 THR OG1 HG1 sing N N 341 THR CG2 HG21 sing N N 342 THR CG2 HG22 sing N N 343 THR CG2 HG23 sing N N 344 THR OXT HXT sing N N 345 TRP N CA sing N N 346 TRP N H sing N N 347 TRP N H2 sing N N 348 TRP CA C sing N N 349 TRP CA CB sing N N 350 TRP CA HA sing N N 351 TRP C O doub N N 352 TRP C OXT sing N N 353 TRP CB CG sing N N 354 TRP CB HB2 sing N N 355 TRP CB HB3 sing N N 356 TRP CG CD1 doub Y N 357 TRP CG CD2 sing Y N 358 TRP CD1 NE1 sing Y N 359 TRP CD1 HD1 sing N N 360 TRP CD2 CE2 doub Y N 361 TRP CD2 CE3 sing Y N 362 TRP NE1 CE2 sing Y N 363 TRP NE1 HE1 sing N N 364 TRP CE2 CZ2 sing Y N 365 TRP CE3 CZ3 doub Y N 366 TRP CE3 HE3 sing N N 367 TRP CZ2 CH2 doub Y N 368 TRP CZ2 HZ2 sing N N 369 TRP CZ3 CH2 sing Y N 370 TRP CZ3 HZ3 sing N N 371 TRP CH2 HH2 sing N N 372 TRP OXT HXT sing N N 373 TYR N CA sing N N 374 TYR N H sing N N 375 TYR N H2 sing N N 376 TYR CA C sing N N 377 TYR CA CB sing N N 378 TYR CA HA sing N N 379 TYR C O doub N N 380 TYR C OXT sing N N 381 TYR CB CG sing N N 382 TYR CB HB2 sing N N 383 TYR CB HB3 sing N N 384 TYR CG CD1 doub Y N 385 TYR CG CD2 sing Y N 386 TYR CD1 CE1 sing Y N 387 TYR CD1 HD1 sing N N 388 TYR CD2 CE2 doub Y N 389 TYR CD2 HD2 sing N N 390 TYR CE1 CZ doub Y N 391 TYR CE1 HE1 sing N N 392 TYR CE2 CZ sing Y N 393 TYR CE2 HE2 sing N N 394 TYR CZ OH sing N N 395 TYR OH HH sing N N 396 TYR OXT HXT sing N N 397 VAL N CA sing N N 398 VAL N H sing N N 399 VAL N H2 sing N N 400 VAL CA C sing N N 401 VAL CA CB sing N N 402 VAL CA HA sing N N 403 VAL C O doub N N 404 VAL C OXT sing N N 405 VAL CB CG1 sing N N 406 VAL CB CG2 sing N N 407 VAL CB HB sing N N 408 VAL CG1 HG11 sing N N 409 VAL CG1 HG12 sing N N 410 VAL CG1 HG13 sing N N 411 VAL CG2 HG21 sing N N 412 VAL CG2 HG22 sing N N 413 VAL CG2 HG23 sing N N 414 VAL OXT HXT sing N N 415 # _atom_sites.entry_id 3KYF _atom_sites.fract_transf_matrix[1][1] 0.008873 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000342 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024211 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016248 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_