HEADER UNKNOWN FUNCTION 06-DEC-09 3KYG TITLE CRYSTAL STRUCTURE OF VCA0042 (L135R) COMPLEXED WITH C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN VCA0042; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 21-247; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: VC_A0042; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: E. COLI BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15C KEYWDS C-DI-GMP, PILZ DOMAIN, PP4397, VCA0042, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR K.S.RYU,J.KO,H.KIM,B.S.CHOI REVDAT 3 29-MAY-24 3KYG 1 REMARK REVDAT 2 10-NOV-21 3KYG 1 REMARK SEQADV LINK REVDAT 1 14-APR-10 3KYG 0 JRNL AUTH J.KO,K.S.RYU,H.KIM,J.S.SHIN,J.O.LEE,C.CHEONG,B.S.CHOI JRNL TITL STRUCTURE OF PP4397 REVEALS THE MOLECULAR BASIS FOR JRNL TITL 2 DIFFERENT C-DI-GMP BINDING MODES BY PILZ DOMAIN PROTEINS. JRNL REF J.MOL.BIOL. V. 398 97 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20226196 JRNL DOI 10.1016/J.JMB.2010.03.007 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 95813.330 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 32105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1595 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4861 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 260 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.017 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3606 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 184 REMARK 3 SOLVENT ATOMS : 274 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53000 REMARK 3 B22 (A**2) : 0.93000 REMARK 3 B33 (A**2) : 0.60000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.700 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.020 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.470 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.230 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.980 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.230 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.35 REMARK 3 BSOL : 43.54 REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : KS_5GP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : DNA-RNA.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : KS_5GP.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 3KYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61951 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.58300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.30200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.61650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.30200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.58300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.61650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -8.65 79.21 REMARK 500 THR A 65 -121.75 40.39 REMARK 500 THR A 196 -82.05 34.25 REMARK 500 SER B 39 -2.65 77.40 REMARK 500 THR B 65 -118.99 38.18 REMARK 500 GLU B 153 -14.22 74.59 REMARK 500 THR B 196 -95.53 51.74 REMARK 500 LEU B 246 -177.05 -64.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5GP B 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KYG RELATED DB: PDB DBREF 3KYG A 21 247 UNP Q9KNC3 Q9KNC3_VIBCH 21 247 DBREF 3KYG B 21 247 UNP Q9KNC3 Q9KNC3_VIBCH 21 247 SEQADV 3KYG ARG A 135 UNP Q9KNC3 LEU 135 ENGINEERED MUTATION SEQADV 3KYG ARG B 135 UNP Q9KNC3 LEU 135 ENGINEERED MUTATION SEQRES 1 A 227 SER LYS THR VAL SER THR ILE ASN SER THR ASP ALA LEU SEQRES 2 A 227 ALA MET VAL GLU HIS SER SER GLU LEU THR LEU SER ILE SEQRES 3 A 227 THR THR PRO VAL GLY THR LYS PHE VAL CYS ARG THR PRO SEQRES 4 A 227 PHE ILE GLY THR HIS THR ASP LYS PHE LEU LEU VAL GLU SEQRES 5 A 227 MET PRO LYS ILE SER ALA ASP ASP LEU GLN TYR PHE PHE SEQRES 6 A 227 GLN GLU GLY PHE TRP MET ASN ILE ARG ALA ILE SER PRO SEQRES 7 A 227 ARG GLY GLU GLY ALA LEU ILE HIS PHE ARG SER GLN LEU SEQRES 8 A 227 MET HIS ILE LEU GLN GLU PRO VAL PRO MET ALA PHE LEU SEQRES 9 A 227 SER ILE PRO ASN THR MET GLN VAL SER GLN ARG ARG LYS SEQRES 10 A 227 GLU PRO ARG PHE GLU LEU ASN LEU ALA GLY LYS VAL LEU SEQRES 11 A 227 PHE ASP GLU HIS ARG GLY ASP CYS GLU LEU ARG ASP LEU SEQRES 12 A 227 SER ARG SER GLY CYS ARG PHE ILE THR PRO PRO LEU GLY SEQRES 13 A 227 LYS THR TYR GLN VAL GLY ASP LEU VAL ALA LEU GLU ILE SEQRES 14 A 227 PHE SER ASP LEU ARG GLY THR LYS THR PHE PRO PRO LEU SEQRES 15 A 227 THR GLY LYS ILE CYS ASN LEU GLN ARG SER LEU HIS HIS SEQRES 16 A 227 ALA ARG TYR GLY LEU GLU PHE ASN GLU GLU GLY ARG ASN SEQRES 17 A 227 ASN ALA LYS ASN LEU LEU ALA GLN LEU LYS PHE ASN GLY SEQRES 18 A 227 THR LYS LEU THR LEU ASN SEQRES 1 B 227 SER LYS THR VAL SER THR ILE ASN SER THR ASP ALA LEU SEQRES 2 B 227 ALA MET VAL GLU HIS SER SER GLU LEU THR LEU SER ILE SEQRES 3 B 227 THR THR PRO VAL GLY THR LYS PHE VAL CYS ARG THR PRO SEQRES 4 B 227 PHE ILE GLY THR HIS THR ASP LYS PHE LEU LEU VAL GLU SEQRES 5 B 227 MET PRO LYS ILE SER ALA ASP ASP LEU GLN TYR PHE PHE SEQRES 6 B 227 GLN GLU GLY PHE TRP MET ASN ILE ARG ALA ILE SER PRO SEQRES 7 B 227 ARG GLY GLU GLY ALA LEU ILE HIS PHE ARG SER GLN LEU SEQRES 8 B 227 MET HIS ILE LEU GLN GLU PRO VAL PRO MET ALA PHE LEU SEQRES 9 B 227 SER ILE PRO ASN THR MET GLN VAL SER GLN ARG ARG LYS SEQRES 10 B 227 GLU PRO ARG PHE GLU LEU ASN LEU ALA GLY LYS VAL LEU SEQRES 11 B 227 PHE ASP GLU HIS ARG GLY ASP CYS GLU LEU ARG ASP LEU SEQRES 12 B 227 SER ARG SER GLY CYS ARG PHE ILE THR PRO PRO LEU GLY SEQRES 13 B 227 LYS THR TYR GLN VAL GLY ASP LEU VAL ALA LEU GLU ILE SEQRES 14 B 227 PHE SER ASP LEU ARG GLY THR LYS THR PHE PRO PRO LEU SEQRES 15 B 227 THR GLY LYS ILE CYS ASN LEU GLN ARG SER LEU HIS HIS SEQRES 16 B 227 ALA ARG TYR GLY LEU GLU PHE ASN GLU GLU GLY ARG ASN SEQRES 17 B 227 ASN ALA LYS ASN LEU LEU ALA GLN LEU LYS PHE ASN GLY SEQRES 18 B 227 THR LYS LEU THR LEU ASN HET 5GP A 501 23 HET 5GP A 502 23 HET 5GP A 503 23 HET 5GP A 504 23 HET 5GP B 501 23 HET 5GP B 502 23 HET 5GP B 503 23 HET 5GP B 504 23 HETNAM 5GP GUANOSINE-5'-MONOPHOSPHATE FORMUL 3 5GP 8(C10 H14 N5 O8 P) FORMUL 11 HOH *274(H2 O) HELIX 1 1 SER A 29 ALA A 34 1 6 HELIX 2 2 SER A 77 PHE A 85 1 9 HELIX 3 3 ASN A 223 GLN A 236 1 14 HELIX 4 4 SER B 29 MET B 35 1 7 HELIX 5 5 SER B 77 PHE B 85 1 9 HELIX 6 6 ASN B 223 GLN B 236 1 14 SHEET 1 A 9 THR A 23 ASN A 28 0 SHEET 2 A 9 THR A 129 GLN A 134 -1 O GLN A 134 N THR A 23 SHEET 3 A 9 ALA A 103 LEU A 115 -1 N HIS A 106 O GLN A 131 SHEET 4 A 9 MET A 121 LEU A 124 -1 O MET A 121 N LEU A 115 SHEET 5 A 9 PHE A 68 GLU A 72 -1 N LEU A 69 O LEU A 124 SHEET 6 A 9 LYS A 53 HIS A 64 -1 N GLY A 62 O LEU A 70 SHEET 7 A 9 GLU A 41 THR A 47 -1 N ILE A 46 O PHE A 54 SHEET 8 A 9 TRP A 90 SER A 97 -1 O ASN A 92 N SER A 45 SHEET 9 A 9 ALA A 103 LEU A 115 -1 O PHE A 107 N ILE A 93 SHEET 1 B14 GLY A 195 THR A 198 0 SHEET 2 B14 LEU A 184 ASP A 192 -1 N SER A 191 O LYS A 197 SHEET 3 B14 PHE A 141 PHE A 151 -1 N LEU A 150 O ALA A 186 SHEET 4 B14 HIS A 154 LEU A 163 -1 O LEU A 163 N PHE A 141 SHEET 5 B14 GLY A 167 ILE A 171 -1 O ARG A 169 N ARG A 161 SHEET 6 B14 ALA A 216 PHE A 222 -1 O TYR A 218 N PHE A 170 SHEET 7 B14 LEU A 202 SER A 212 -1 N CYS A 207 O GLY A 219 SHEET 8 B14 LEU B 202 SER B 212 -1 O ARG B 211 N LEU A 209 SHEET 9 B14 ALA B 216 PHE B 222 -1 O GLY B 219 N CYS B 207 SHEET 10 B14 GLY B 167 ILE B 171 -1 N CYS B 168 O LEU B 220 SHEET 11 B14 HIS B 154 LEU B 163 -1 N ARG B 161 O ARG B 169 SHEET 12 B14 PHE B 141 PHE B 151 -1 N LEU B 145 O LEU B 160 SHEET 13 B14 LEU B 184 ASP B 192 -1 O ALA B 186 N LEU B 150 SHEET 14 B14 GLY B 195 THR B 198 -1 O LYS B 197 N SER B 191 SHEET 1 C 6 GLY A 195 THR A 198 0 SHEET 2 C 6 LEU A 184 ASP A 192 -1 N SER A 191 O LYS A 197 SHEET 3 C 6 LEU A 202 SER A 212 -1 O LEU A 202 N LEU A 187 SHEET 4 C 6 LEU B 202 SER B 212 -1 O ARG B 211 N LEU A 209 SHEET 5 C 6 LEU B 184 ASP B 192 -1 N LEU B 187 O LEU B 202 SHEET 6 C 6 GLY B 195 THR B 198 -1 O LYS B 197 N SER B 191 SHEET 1 D 2 LYS A 238 PHE A 239 0 SHEET 2 D 2 LEU A 244 THR A 245 -1 O THR A 245 N LYS A 238 SHEET 1 E 9 THR B 23 ASN B 28 0 SHEET 2 E 9 THR B 129 GLN B 134 -1 O GLN B 134 N THR B 23 SHEET 3 E 9 ALA B 103 LEU B 115 -1 N LEU B 104 O SER B 133 SHEET 4 E 9 MET B 121 LEU B 124 -1 O MET B 121 N LEU B 115 SHEET 5 E 9 PHE B 68 GLU B 72 -1 N LEU B 69 O LEU B 124 SHEET 6 E 9 LYS B 53 HIS B 64 -1 N GLY B 62 O LEU B 70 SHEET 7 E 9 GLU B 41 THR B 47 -1 N ILE B 46 O PHE B 54 SHEET 8 E 9 TRP B 90 SER B 97 -1 O ASN B 92 N SER B 45 SHEET 9 E 9 ALA B 103 LEU B 115 -1 O PHE B 107 N ILE B 93 SHEET 1 F 2 LYS B 238 PHE B 239 0 SHEET 2 F 2 LEU B 244 THR B 245 -1 O THR B 245 N LYS B 238 LINK P 5GP A 501 O3' 5GP A 502 1555 1555 1.60 LINK O3' 5GP A 501 P 5GP A 502 1555 1555 1.60 LINK P 5GP A 503 O3' 5GP A 504 1555 1555 1.60 LINK O3' 5GP A 503 P 5GP A 504 1555 1555 1.60 LINK P 5GP B 501 O3' 5GP B 502 1555 1555 1.60 LINK O3' 5GP B 501 P 5GP B 502 1555 1555 1.60 LINK P 5GP B 503 O3' 5GP B 504 1555 1555 1.60 LINK O3' 5GP B 503 P 5GP B 504 1555 1555 1.60 CISPEP 1 GLU A 117 PRO A 118 0 0.16 CISPEP 2 GLU B 117 PRO B 118 0 -0.12 SITE 1 AC1 12 ARG A 136 ARG A 140 ARG A 169 ASN A 208 SITE 2 AC1 12 GLN A 210 HOH A 260 HOH A 269 HOH A 281 SITE 3 AC1 12 5GP A 502 5GP A 503 5GP A 504 SER B 212 SITE 1 AC2 10 ARG A 99 GLY A 100 GLN A 134 ARG A 135 SITE 2 AC2 10 ARG A 136 HOH A 257 HOH A 290 HOH A 306 SITE 3 AC2 10 5GP A 501 5GP A 504 SITE 1 AC3 18 ARG A 140 ASP A 162 SER A 164 SER A 166 SITE 2 AC3 18 GLY A 167 CYS A 168 ARG A 169 CYS A 207 SITE 3 AC3 18 ASN A 208 GLY A 219 LEU A 220 GLU A 221 SITE 4 AC3 18 HOH A 274 HOH A 325 HOH A 327 HOH A 355 SITE 5 AC3 18 5GP A 501 5GP A 504 SITE 1 AC4 9 HOH A 10 GLU A 101 ARG A 135 ARG A 136 SITE 2 AC4 9 LYS A 137 ARG A 140 5GP A 501 5GP A 502 SITE 3 AC4 9 5GP A 503 SITE 1 AC5 13 SER A 212 HIS A 214 ARG B 136 ARG B 140 SITE 2 AC5 13 ARG B 169 ASN B 208 GLN B 210 HOH B 264 SITE 3 AC5 13 HOH B 288 HOH B 335 5GP B 502 5GP B 503 SITE 4 AC5 13 5GP B 504 SITE 1 AC6 13 ARG B 99 GLY B 100 GLN B 134 ARG B 135 SITE 2 AC6 13 ARG B 136 HOH B 258 HOH B 318 HOH B 332 SITE 3 AC6 13 HOH B 341 HOH B 364 HOH B 371 5GP B 501 SITE 4 AC6 13 5GP B 504 SITE 1 AC7 17 HIS A 214 ARG B 140 ASP B 162 SER B 164 SITE 2 AC7 17 SER B 166 GLY B 167 CYS B 168 ARG B 169 SITE 3 AC7 17 CYS B 207 ASN B 208 GLY B 219 LEU B 220 SITE 4 AC7 17 GLU B 221 HOH B 282 HOH B 295 5GP B 501 SITE 5 AC7 17 5GP B 504 SITE 1 AC8 11 HIS A 214 GLU B 101 ARG B 135 ARG B 136 SITE 2 AC8 11 LYS B 137 ARG B 140 HOH B 257 HOH B 281 SITE 3 AC8 11 5GP B 501 5GP B 502 5GP B 503 CRYST1 63.166 67.233 128.604 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015831 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014874 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007776 0.00000