HEADER TRANSCRIPTION/PROTEIN BINDING 07-DEC-09 3KYS TITLE CRYSTAL STRUCTURE OF HUMAN YAP AND TEAD COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL ENHANCER FACTOR TEF-1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: YAP BINDING DOMAIN; COMPND 5 SYNONYM: NTEF-1,PROTEIN GT-IIC,TEA DOMAIN FAMILY MEMBER 1,TEAD-1, COMPND 6 TRANSCRIPTION FACTOR 13,TCF-13; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: X=P1L; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: 65 KDA YES-ASSOCIATED PROTEIN; COMPND 11 CHAIN: B, D; COMPND 12 FRAGMENT: TEAD BINDING DOMAIN; COMPND 13 SYNONYM: RANSCRIPTIONAL COACTIVATOR YAP1,YES-ASSOCIATED PROTEIN 1, COMPND 14 PROTEIN YORKIE HOMOLOG,YES-ASSOCIATED PROTEIN YAP65 HOMOLOG; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TEAD1, TCF13, TEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: YAP1, YAP65; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS IMMUNOGLOBULIN-LIKE FOLD, ACTIVATOR, DISEASE MUTATION, DNA-BINDING, KEYWDS 2 NUCLEUS, PHOSPHOPROTEIN, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 3 TRANSCRIPTION-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.LI,B.ZHAO,P.WANG,F.CHEN,Z.DONG,H.YANG,K.L.GUAN,Y.XU REVDAT 2 07-OCT-20 3KYS 1 COMPND SOURCE REMARK SEQADV REVDAT 2 2 1 SEQRES HET HETNAM FORMUL REVDAT 2 3 1 HELIX SHEET LINK SITE REVDAT 2 4 1 ATOM REVDAT 1 23-FEB-10 3KYS 0 JRNL AUTH Z.LI,B.ZHAO,P.WANG,F.CHEN,Z.DONG,H.YANG,K.L.GUAN,Y.XU JRNL TITL STRUCTURAL INSIGHTS INTO THE YAP AND TEAD COMPLEX JRNL REF GENES DEV. V. 24 235 2010 JRNL REFN ISSN 0890-9369 JRNL PMID 20123905 JRNL DOI 10.1101/GAD.1865810 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 20507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1050 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.1600 - 5.6000 0.99 2623 154 0.2358 0.2593 REMARK 3 2 5.6000 - 4.4400 1.00 2497 144 0.1877 0.1907 REMARK 3 3 4.4400 - 3.8800 1.00 2525 121 0.1991 0.2634 REMARK 3 4 3.8800 - 3.5300 1.00 2445 136 0.2202 0.2883 REMARK 3 5 3.5300 - 3.2800 1.00 2470 128 0.2561 0.2993 REMARK 3 6 3.2700 - 3.0800 1.00 2427 142 0.2738 0.3613 REMARK 3 7 3.0800 - 2.9300 0.98 2412 129 0.2931 0.3538 REMARK 3 8 2.9300 - 2.8000 0.85 2058 96 0.3108 0.3533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 195:411) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7949 9.8999 18.7530 REMARK 3 T TENSOR REMARK 3 T11: 0.3532 T22: 0.3422 REMARK 3 T33: 0.3591 T12: -0.0931 REMARK 3 T13: -0.0898 T23: 0.0714 REMARK 3 L TENSOR REMARK 3 L11: 3.4279 L22: 2.4175 REMARK 3 L33: 4.8506 L12: -0.2850 REMARK 3 L13: -0.7859 L23: 0.0656 REMARK 3 S TENSOR REMARK 3 S11: -0.0815 S12: -0.0058 S13: 0.0398 REMARK 3 S21: -0.0714 S22: 0.0646 S23: -0.1590 REMARK 3 S31: 0.2014 S32: 0.2531 S33: 0.0207 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN B AND RESSEQ 51:100) REMARK 3 ORIGIN FOR THE GROUP (A): -8.6757 -1.2852 27.4797 REMARK 3 T TENSOR REMARK 3 T11: 0.7245 T22: 0.6384 REMARK 3 T33: 0.6002 T12: 0.0114 REMARK 3 T13: -0.1702 T23: 0.1616 REMARK 3 L TENSOR REMARK 3 L11: 3.3964 L22: 4.5663 REMARK 3 L33: 2.3333 L12: 0.2805 REMARK 3 L13: -1.2820 L23: 0.5748 REMARK 3 S TENSOR REMARK 3 S11: -0.2285 S12: -0.6405 S13: -1.0142 REMARK 3 S21: 0.1688 S22: 0.0546 S23: -0.7259 REMARK 3 S31: 0.6726 S32: 0.6161 S33: 0.0973 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 194:411) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3296 11.2843 -23.6735 REMARK 3 T TENSOR REMARK 3 T11: 0.2117 T22: 0.3678 REMARK 3 T33: 0.3663 T12: 0.0496 REMARK 3 T13: -0.0222 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 2.4636 L22: 3.5187 REMARK 3 L33: 4.7854 L12: 0.7516 REMARK 3 L13: -0.6048 L23: 0.2758 REMARK 3 S TENSOR REMARK 3 S11: 0.0016 S12: -0.0086 S13: 0.1009 REMARK 3 S21: -0.1243 S22: 0.0558 S23: 0.1962 REMARK 3 S31: 0.1063 S32: -0.3846 S33: -0.0124 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN D AND RESSEQ 52:100) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3367 -0.5550 -32.8117 REMARK 3 T TENSOR REMARK 3 T11: 0.6428 T22: 0.6103 REMARK 3 T33: 0.5507 T12: -0.0205 REMARK 3 T13: -0.0835 T23: -0.0908 REMARK 3 L TENSOR REMARK 3 L11: 3.2285 L22: 3.8013 REMARK 3 L33: 1.9668 L12: -0.0115 REMARK 3 L13: -0.7628 L23: 0.3114 REMARK 3 S TENSOR REMARK 3 S11: -0.3897 S12: 0.3414 S13: -0.8008 REMARK 3 S21: -0.2120 S22: 0.3041 S23: 0.5642 REMARK 3 S31: 0.5191 S32: -0.4466 S33: 0.0726 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3KYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97869 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 44.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.10 REMARK 200 R MERGE FOR SHELL (I) : 0.35400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE, 2M SODIUM REMARK 280 FORMATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.32150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.84750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.25150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.84750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.32150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.25150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 193 REMARK 465 ARG A 194 REMARK 465 ALA A 230 REMARK 465 ASN A 231 REMARK 465 HIS A 232 REMARK 465 SER A 233 REMARK 465 TYR A 234 REMARK 465 SER A 235 REMARK 465 ASP A 236 REMARK 465 PRO A 237 REMARK 465 LEU A 238 REMARK 465 SER B 47 REMARK 465 HIS B 48 REMARK 465 MET B 49 REMARK 465 ALA B 50 REMARK 465 PRO B 101 REMARK 465 LYS B 102 REMARK 465 SER B 103 REMARK 465 HIS B 104 REMARK 465 SER B 105 REMARK 465 ARG B 106 REMARK 465 GLN B 107 REMARK 465 ALA B 108 REMARK 465 SER B 109 REMARK 465 THR B 110 REMARK 465 ASP B 111 REMARK 465 ALA B 112 REMARK 465 GLY B 113 REMARK 465 THR B 114 REMARK 465 ALA B 115 REMARK 465 GLY B 116 REMARK 465 ALA B 117 REMARK 465 LEU B 118 REMARK 465 THR B 119 REMARK 465 PRO B 120 REMARK 465 GLN B 121 REMARK 465 HIS B 122 REMARK 465 VAL B 123 REMARK 465 ARG B 124 REMARK 465 ALA B 125 REMARK 465 HIS B 126 REMARK 465 SER B 127 REMARK 465 SER B 128 REMARK 465 PRO B 129 REMARK 465 ALA B 130 REMARK 465 SER B 131 REMARK 465 LEU B 132 REMARK 465 GLN B 133 REMARK 465 LEU B 134 REMARK 465 GLY B 135 REMARK 465 ALA B 136 REMARK 465 VAL B 137 REMARK 465 SER B 138 REMARK 465 PRO B 139 REMARK 465 GLY B 140 REMARK 465 THR B 141 REMARK 465 LEU B 142 REMARK 465 THR B 143 REMARK 465 PRO B 144 REMARK 465 THR B 145 REMARK 465 GLY B 146 REMARK 465 VAL B 147 REMARK 465 VAL B 148 REMARK 465 SER B 149 REMARK 465 GLY B 150 REMARK 465 PRO B 151 REMARK 465 ALA B 152 REMARK 465 ALA B 153 REMARK 465 THR B 154 REMARK 465 PRO B 155 REMARK 465 THR B 156 REMARK 465 ALA B 157 REMARK 465 GLN B 158 REMARK 465 HIS B 159 REMARK 465 LEU B 160 REMARK 465 ARG B 161 REMARK 465 GLN B 162 REMARK 465 SER B 163 REMARK 465 SER B 164 REMARK 465 PHE B 165 REMARK 465 GLU B 166 REMARK 465 ILE B 167 REMARK 465 PRO B 168 REMARK 465 ASP B 169 REMARK 465 ASP B 170 REMARK 465 VAL B 171 REMARK 465 MET C 193 REMARK 465 ASN C 231 REMARK 465 HIS C 232 REMARK 465 SER C 233 REMARK 465 TYR C 234 REMARK 465 SER C 235 REMARK 465 ASP C 236 REMARK 465 PRO C 237 REMARK 465 SER D 47 REMARK 465 HIS D 48 REMARK 465 MET D 49 REMARK 465 ALA D 50 REMARK 465 GLY D 51 REMARK 465 PRO D 101 REMARK 465 LYS D 102 REMARK 465 SER D 103 REMARK 465 HIS D 104 REMARK 465 SER D 105 REMARK 465 ARG D 106 REMARK 465 GLN D 107 REMARK 465 ALA D 108 REMARK 465 SER D 109 REMARK 465 THR D 110 REMARK 465 ASP D 111 REMARK 465 ALA D 112 REMARK 465 GLY D 113 REMARK 465 THR D 114 REMARK 465 ALA D 115 REMARK 465 GLY D 116 REMARK 465 ALA D 117 REMARK 465 LEU D 118 REMARK 465 THR D 119 REMARK 465 PRO D 120 REMARK 465 GLN D 121 REMARK 465 HIS D 122 REMARK 465 VAL D 123 REMARK 465 ARG D 124 REMARK 465 ALA D 125 REMARK 465 HIS D 126 REMARK 465 SER D 127 REMARK 465 SER D 128 REMARK 465 PRO D 129 REMARK 465 ALA D 130 REMARK 465 SER D 131 REMARK 465 LEU D 132 REMARK 465 GLN D 133 REMARK 465 LEU D 134 REMARK 465 GLY D 135 REMARK 465 ALA D 136 REMARK 465 VAL D 137 REMARK 465 SER D 138 REMARK 465 PRO D 139 REMARK 465 GLY D 140 REMARK 465 THR D 141 REMARK 465 LEU D 142 REMARK 465 THR D 143 REMARK 465 PRO D 144 REMARK 465 THR D 145 REMARK 465 GLY D 146 REMARK 465 VAL D 147 REMARK 465 VAL D 148 REMARK 465 SER D 149 REMARK 465 GLY D 150 REMARK 465 PRO D 151 REMARK 465 ALA D 152 REMARK 465 ALA D 153 REMARK 465 THR D 154 REMARK 465 PRO D 155 REMARK 465 THR D 156 REMARK 465 ALA D 157 REMARK 465 GLN D 158 REMARK 465 HIS D 159 REMARK 465 LEU D 160 REMARK 465 ARG D 161 REMARK 465 GLN D 162 REMARK 465 SER D 163 REMARK 465 SER D 164 REMARK 465 PHE D 165 REMARK 465 GLU D 166 REMARK 465 ILE D 167 REMARK 465 PRO D 168 REMARK 465 ASP D 169 REMARK 465 ASP D 170 REMARK 465 VAL D 171 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 411 O REMARK 470 ASP C 411 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 249 31.43 -91.75 REMARK 500 LYS A 250 -9.54 -143.74 REMARK 500 GLU A 253 52.44 -112.34 REMARK 500 LYS A 254 -159.14 -119.61 REMARK 500 PHE A 314 -128.46 58.11 REMARK 500 ASN A 331 46.01 36.54 REMARK 500 GLN A 382 17.66 58.77 REMARK 500 ASN B 74 82.05 -160.58 REMARK 500 THR B 77 37.38 -86.50 REMARK 500 GLU C 330 -76.40 -133.36 REMARK 500 GLN C 382 17.98 57.19 REMARK 500 ASP D 60 40.73 -105.02 REMARK 500 ASN D 74 81.97 -160.61 REMARK 500 ASN D 79 67.97 -118.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 508 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH D 209 DISTANCE = 5.82 ANGSTROMS DBREF 3KYS A 194 411 UNP P28347 TEAD1_HUMAN 209 426 DBREF 3KYS B 50 171 UNP P46937 YAP1_HUMAN 50 171 DBREF 3KYS C 194 411 UNP P28347 TEAD1_HUMAN 209 426 DBREF 3KYS D 50 171 UNP P46937 YAP1_HUMAN 50 171 SEQADV 3KYS MET A 193 UNP P28347 EXPRESSION TAG SEQADV 3KYS SER B 47 UNP P46937 EXPRESSION TAG SEQADV 3KYS HIS B 48 UNP P46937 EXPRESSION TAG SEQADV 3KYS MET B 49 UNP P46937 EXPRESSION TAG SEQADV 3KYS MET C 193 UNP P28347 EXPRESSION TAG SEQADV 3KYS SER D 47 UNP P46937 EXPRESSION TAG SEQADV 3KYS HIS D 48 UNP P46937 EXPRESSION TAG SEQADV 3KYS MET D 49 UNP P46937 EXPRESSION TAG SEQRES 1 A 219 MET ARG SER ILE GLY THR THR LYS LEU ARG LEU VAL GLU SEQRES 2 A 219 PHE SER ALA PHE LEU GLU GLN GLN ARG ASP PRO ASP SER SEQRES 3 A 219 TYR ASN LYS HIS LEU PHE VAL HIS ILE GLY HIS ALA ASN SEQRES 4 A 219 HIS SER TYR SER ASP PRO LEU LEU GLU SER VAL ASP ILE SEQRES 5 A 219 ARG GLN ILE TYR ASP LYS PHE PRO GLU LYS LYS GLY GLY SEQRES 6 A 219 LEU LYS GLU LEU PHE GLY LYS GLY PRO GLN ASN ALA PHE SEQRES 7 A 219 PHE LEU VAL LYS PHE TRP ALA ASP LEU ASN CYS ASN ILE SEQRES 8 A 219 GLN ASP ASP ALA GLY ALA PHE TYR GLY VAL THR SER GLN SEQRES 9 A 219 TYR GLU SER SER GLU ASN MET THR VAL THR CYS SER THR SEQRES 10 A 219 LYS VAL CYS SER PHE GLY LYS GLN VAL VAL GLU LYS VAL SEQRES 11 A 219 GLU THR GLU TYR ALA ARG PHE GLU ASN GLY ARG PHE VAL SEQRES 12 A 219 TYR ARG ILE ASN ARG SER PRO MET P1L GLU TYR MET ILE SEQRES 13 A 219 ASN PHE ILE HIS LYS LEU LYS HIS LEU PRO GLU LYS TYR SEQRES 14 A 219 MET MET ASN SER VAL LEU GLU ASN PHE THR ILE LEU LEU SEQRES 15 A 219 VAL VAL THR ASN ARG ASP THR GLN GLU THR LEU LEU CYS SEQRES 16 A 219 MET ALA CYS VAL PHE GLU VAL SER ASN SER GLU HIS GLY SEQRES 17 A 219 ALA GLN HIS HIS ILE TYR ARG LEU VAL LYS ASP SEQRES 1 B 125 SER HIS MET ALA GLY HIS GLN ILE VAL HIS VAL ARG GLY SEQRES 2 B 125 ASP SER GLU THR ASP LEU GLU ALA LEU PHE ASN ALA VAL SEQRES 3 B 125 MET ASN PRO LYS THR ALA ASN VAL PRO GLN THR VAL PRO SEQRES 4 B 125 MET ARG LEU ARG LYS LEU PRO ASP SER PHE PHE LYS PRO SEQRES 5 B 125 PRO GLU PRO LYS SER HIS SER ARG GLN ALA SER THR ASP SEQRES 6 B 125 ALA GLY THR ALA GLY ALA LEU THR PRO GLN HIS VAL ARG SEQRES 7 B 125 ALA HIS SER SER PRO ALA SER LEU GLN LEU GLY ALA VAL SEQRES 8 B 125 SER PRO GLY THR LEU THR PRO THR GLY VAL VAL SER GLY SEQRES 9 B 125 PRO ALA ALA THR PRO THR ALA GLN HIS LEU ARG GLN SER SEQRES 10 B 125 SER PHE GLU ILE PRO ASP ASP VAL SEQRES 1 C 219 MET ARG SER ILE GLY THR THR LYS LEU ARG LEU VAL GLU SEQRES 2 C 219 PHE SER ALA PHE LEU GLU GLN GLN ARG ASP PRO ASP SER SEQRES 3 C 219 TYR ASN LYS HIS LEU PHE VAL HIS ILE GLY HIS ALA ASN SEQRES 4 C 219 HIS SER TYR SER ASP PRO LEU LEU GLU SER VAL ASP ILE SEQRES 5 C 219 ARG GLN ILE TYR ASP LYS PHE PRO GLU LYS LYS GLY GLY SEQRES 6 C 219 LEU LYS GLU LEU PHE GLY LYS GLY PRO GLN ASN ALA PHE SEQRES 7 C 219 PHE LEU VAL LYS PHE TRP ALA ASP LEU ASN CYS ASN ILE SEQRES 8 C 219 GLN ASP ASP ALA GLY ALA PHE TYR GLY VAL THR SER GLN SEQRES 9 C 219 TYR GLU SER SER GLU ASN MET THR VAL THR CYS SER THR SEQRES 10 C 219 LYS VAL CYS SER PHE GLY LYS GLN VAL VAL GLU LYS VAL SEQRES 11 C 219 GLU THR GLU TYR ALA ARG PHE GLU ASN GLY ARG PHE VAL SEQRES 12 C 219 TYR ARG ILE ASN ARG SER PRO MET P1L GLU TYR MET ILE SEQRES 13 C 219 ASN PHE ILE HIS LYS LEU LYS HIS LEU PRO GLU LYS TYR SEQRES 14 C 219 MET MET ASN SER VAL LEU GLU ASN PHE THR ILE LEU LEU SEQRES 15 C 219 VAL VAL THR ASN ARG ASP THR GLN GLU THR LEU LEU CYS SEQRES 16 C 219 MET ALA CYS VAL PHE GLU VAL SER ASN SER GLU HIS GLY SEQRES 17 C 219 ALA GLN HIS HIS ILE TYR ARG LEU VAL LYS ASP SEQRES 1 D 125 SER HIS MET ALA GLY HIS GLN ILE VAL HIS VAL ARG GLY SEQRES 2 D 125 ASP SER GLU THR ASP LEU GLU ALA LEU PHE ASN ALA VAL SEQRES 3 D 125 MET ASN PRO LYS THR ALA ASN VAL PRO GLN THR VAL PRO SEQRES 4 D 125 MET ARG LEU ARG LYS LEU PRO ASP SER PHE PHE LYS PRO SEQRES 5 D 125 PRO GLU PRO LYS SER HIS SER ARG GLN ALA SER THR ASP SEQRES 6 D 125 ALA GLY THR ALA GLY ALA LEU THR PRO GLN HIS VAL ARG SEQRES 7 D 125 ALA HIS SER SER PRO ALA SER LEU GLN LEU GLY ALA VAL SEQRES 8 D 125 SER PRO GLY THR LEU THR PRO THR GLY VAL VAL SER GLY SEQRES 9 D 125 PRO ALA ALA THR PRO THR ALA GLN HIS LEU ARG GLN SER SEQRES 10 D 125 SER PHE GLU ILE PRO ASP ASP VAL MODRES 3KYS P1L A 344 CYS MODIFIED RESIDUE MODRES 3KYS P1L C 344 CYS MODIFIED RESIDUE HET P1L A 344 23 HET P1L C 344 23 HETNAM P1L S-PALMITOYL-L-CYSTEINE FORMUL 1 P1L 2(C19 H37 N O3 S) FORMUL 5 HOH *52(H2 O) HELIX 1 AA1 ARG A 245 PHE A 251 5 7 HELIX 2 AA2 GLY A 257 GLY A 265 1 9 HELIX 3 AA3 PRO A 266 ASN A 268 5 3 HELIX 4 AA4 P1L A 344 HIS A 356 1 13 HELIX 5 AA5 GLU A 359 GLU A 368 1 10 HELIX 6 AA6 ASP B 60 ASN B 74 1 15 HELIX 7 AA7 PRO B 85 ARG B 89 5 5 HELIX 8 AA8 PRO B 92 LYS B 97 5 6 HELIX 9 AA9 ARG C 245 PHE C 251 5 7 HELIX 10 AB1 GLY C 257 GLY C 265 1 9 HELIX 11 AB2 PRO C 266 ASN C 268 5 3 HELIX 12 AB3 P1L C 344 HIS C 356 1 13 HELIX 13 AB4 GLU C 359 LEU C 367 1 9 HELIX 14 AB5 ASP D 60 ASN D 74 1 15 HELIX 15 AB6 PRO D 92 LYS D 97 5 6 SHEET 1 AA1 8 ARG A 328 GLU A 330 0 SHEET 2 AA1 8 ARG A 333 PRO A 342 -1 O ARG A 333 N GLU A 330 SHEET 3 AA1 8 GLY A 288 SER A 299 -1 N TYR A 297 O TYR A 336 SHEET 4 AA1 8 ARG A 202 ASP A 215 -1 N ARG A 202 O GLU A 298 SHEET 5 AA1 8 SER A 218 ILE A 227 -1 O ASN A 220 N GLN A 212 SHEET 6 AA1 8 SER C 218 ILE C 227 -1 O LYS C 221 N TYR A 219 SHEET 7 AA1 8 ARG C 202 ASP C 215 -1 N ALA C 208 O PHE C 224 SHEET 8 AA1 8 ILE C 196 GLY C 197 -1 N ILE C 196 O LEU C 203 SHEET 1 AA210 ARG A 328 GLU A 330 0 SHEET 2 AA210 ARG A 333 PRO A 342 -1 O ARG A 333 N GLU A 330 SHEET 3 AA210 GLY A 288 SER A 299 -1 N TYR A 297 O TYR A 336 SHEET 4 AA210 ARG A 202 ASP A 215 -1 N ARG A 202 O GLU A 298 SHEET 5 AA210 SER A 218 ILE A 227 -1 O ASN A 220 N GLN A 212 SHEET 6 AA210 SER C 218 ILE C 227 -1 O LYS C 221 N TYR A 219 SHEET 7 AA210 ARG C 202 ASP C 215 -1 N ALA C 208 O PHE C 224 SHEET 8 AA210 GLY C 288 SER C 299 -1 O GLN C 296 N VAL C 204 SHEET 9 AA210 PHE C 334 PRO C 342 -1 O TYR C 336 N TYR C 297 SHEET 10 AA210 ARG C 328 PHE C 329 -1 N ARG C 328 O VAL C 335 SHEET 1 AA3 8 GLU A 240 ASP A 243 0 SHEET 2 AA3 8 GLN A 402 VAL A 409 1 O ARG A 407 N GLU A 240 SHEET 3 AA3 8 PHE A 270 ALA A 277 -1 N LEU A 272 O TYR A 406 SHEET 4 AA3 8 THR A 384 VAL A 394 1 O VAL A 391 N PHE A 275 SHEET 5 AA3 8 PHE A 370 ASN A 378 -1 N LEU A 374 O MET A 388 SHEET 6 AA3 8 VAL A 305 SER A 313 -1 N CYS A 312 O THR A 371 SHEET 7 AA3 8 LYS A 316 GLU A 325 -1 O GLU A 325 N VAL A 305 SHEET 8 AA3 8 HIS B 52 VAL B 57 -1 O HIS B 56 N GLU A 320 SHEET 1 AA4 8 SER C 241 ASP C 243 0 SHEET 2 AA4 8 GLN C 402 VAL C 409 1 O ARG C 407 N VAL C 242 SHEET 3 AA4 8 PHE C 270 TRP C 276 -1 N TRP C 276 O GLN C 402 SHEET 4 AA4 8 THR C 384 PHE C 392 1 O VAL C 391 N PHE C 275 SHEET 5 AA4 8 PHE C 370 ASN C 378 -1 N LEU C 374 O MET C 388 SHEET 6 AA4 8 THR C 304 SER C 313 -1 N CYS C 312 O THR C 371 SHEET 7 AA4 8 LYS C 316 TYR C 326 -1 O LYS C 321 N THR C 309 SHEET 8 AA4 8 ILE D 54 VAL D 57 -1 O HIS D 56 N GLU C 320 LINK C MET A 343 N P1L A 344 1555 1555 1.34 LINK C P1L A 344 N GLU A 345 1555 1555 1.34 LINK C MET C 343 N P1L C 344 1555 1555 1.34 LINK C P1L C 344 N GLU C 345 1555 1555 1.33 CRYST1 44.643 110.503 165.695 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022400 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006035 0.00000