data_3L0A # _entry.id 3L0A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L0A pdb_00003l0a 10.2210/pdb3l0a/pdb RCSB RCSB056670 ? ? WWPDB D_1000056670 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 392282 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 3L0A _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2009-12-09 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Putative exonuclease (RER070207002219) from Eubacterium rectale at 2.19 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 3L0A _cell.length_a 88.248 _cell.length_b 88.248 _cell.length_c 69.350 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3L0A _symmetry.Int_Tables_number 173 _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative exonuclease' 31385.902 1 ? ? ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 122.143 1 ? ? ? ? 4 non-polymer syn '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 354.436 1 ? ? ? ? 5 water nat water 18.015 92 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)QLTSENYYSQEANKEY(MSE)SVSGYKDFAGTYGK(MSE)PCEFYG(MSE)EKLNGRWEDEKSTALLVGSYVDS YFEGSLDQFKKDNPEIFTQKGELKANFKQAEEIIARIERDEYF(MSE)KY(MSE)SGQKQVI(MSE)TGELFGAKWKIK (MSE)DSYIPGVAIVDLKV(MSE)ASITDLKWVKDIGYLDFVRYWGYDIQGAVYQEIVRQNTGEKLPFFIAGATKQTEPD IRIIHVTDNYLQEALH(MSE)VE(MSE)N(MSE)PRILRVKNGEVEPDRCELCDCCRHNRVLKKPISI(MSE)DLTAGI ; _entity_poly.pdbx_seq_one_letter_code_can ;GMQLTSENYYSQEANKEYMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKDNPEI FTQKGELKANFKQAEEIIARIERDEYFMKYMSGQKQVIMTGELFGAKWKIKMDSYIPGVAIVDLKVMASITDLKWVKDIG YLDFVRYWGYDIQGAVYQEIVRQNTGEKLPFFIAGATKQTEPDIRIIHVTDNYLQEALHMVEMNMPRILRVKNGEVEPDR CELCDCCRHNRVLKKPISIMDLTAGI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 392282 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 GLN n 1 4 LEU n 1 5 THR n 1 6 SER n 1 7 GLU n 1 8 ASN n 1 9 TYR n 1 10 TYR n 1 11 SER n 1 12 GLN n 1 13 GLU n 1 14 ALA n 1 15 ASN n 1 16 LYS n 1 17 GLU n 1 18 TYR n 1 19 MSE n 1 20 SER n 1 21 VAL n 1 22 SER n 1 23 GLY n 1 24 TYR n 1 25 LYS n 1 26 ASP n 1 27 PHE n 1 28 ALA n 1 29 GLY n 1 30 THR n 1 31 TYR n 1 32 GLY n 1 33 LYS n 1 34 MSE n 1 35 PRO n 1 36 CYS n 1 37 GLU n 1 38 PHE n 1 39 TYR n 1 40 GLY n 1 41 MSE n 1 42 GLU n 1 43 LYS n 1 44 LEU n 1 45 ASN n 1 46 GLY n 1 47 ARG n 1 48 TRP n 1 49 GLU n 1 50 ASP n 1 51 GLU n 1 52 LYS n 1 53 SER n 1 54 THR n 1 55 ALA n 1 56 LEU n 1 57 LEU n 1 58 VAL n 1 59 GLY n 1 60 SER n 1 61 TYR n 1 62 VAL n 1 63 ASP n 1 64 SER n 1 65 TYR n 1 66 PHE n 1 67 GLU n 1 68 GLY n 1 69 SER n 1 70 LEU n 1 71 ASP n 1 72 GLN n 1 73 PHE n 1 74 LYS n 1 75 LYS n 1 76 ASP n 1 77 ASN n 1 78 PRO n 1 79 GLU n 1 80 ILE n 1 81 PHE n 1 82 THR n 1 83 GLN n 1 84 LYS n 1 85 GLY n 1 86 GLU n 1 87 LEU n 1 88 LYS n 1 89 ALA n 1 90 ASN n 1 91 PHE n 1 92 LYS n 1 93 GLN n 1 94 ALA n 1 95 GLU n 1 96 GLU n 1 97 ILE n 1 98 ILE n 1 99 ALA n 1 100 ARG n 1 101 ILE n 1 102 GLU n 1 103 ARG n 1 104 ASP n 1 105 GLU n 1 106 TYR n 1 107 PHE n 1 108 MSE n 1 109 LYS n 1 110 TYR n 1 111 MSE n 1 112 SER n 1 113 GLY n 1 114 GLN n 1 115 LYS n 1 116 GLN n 1 117 VAL n 1 118 ILE n 1 119 MSE n 1 120 THR n 1 121 GLY n 1 122 GLU n 1 123 LEU n 1 124 PHE n 1 125 GLY n 1 126 ALA n 1 127 LYS n 1 128 TRP n 1 129 LYS n 1 130 ILE n 1 131 LYS n 1 132 MSE n 1 133 ASP n 1 134 SER n 1 135 TYR n 1 136 ILE n 1 137 PRO n 1 138 GLY n 1 139 VAL n 1 140 ALA n 1 141 ILE n 1 142 VAL n 1 143 ASP n 1 144 LEU n 1 145 LYS n 1 146 VAL n 1 147 MSE n 1 148 ALA n 1 149 SER n 1 150 ILE n 1 151 THR n 1 152 ASP n 1 153 LEU n 1 154 LYS n 1 155 TRP n 1 156 VAL n 1 157 LYS n 1 158 ASP n 1 159 ILE n 1 160 GLY n 1 161 TYR n 1 162 LEU n 1 163 ASP n 1 164 PHE n 1 165 VAL n 1 166 ARG n 1 167 TYR n 1 168 TRP n 1 169 GLY n 1 170 TYR n 1 171 ASP n 1 172 ILE n 1 173 GLN n 1 174 GLY n 1 175 ALA n 1 176 VAL n 1 177 TYR n 1 178 GLN n 1 179 GLU n 1 180 ILE n 1 181 VAL n 1 182 ARG n 1 183 GLN n 1 184 ASN n 1 185 THR n 1 186 GLY n 1 187 GLU n 1 188 LYS n 1 189 LEU n 1 190 PRO n 1 191 PHE n 1 192 PHE n 1 193 ILE n 1 194 ALA n 1 195 GLY n 1 196 ALA n 1 197 THR n 1 198 LYS n 1 199 GLN n 1 200 THR n 1 201 GLU n 1 202 PRO n 1 203 ASP n 1 204 ILE n 1 205 ARG n 1 206 ILE n 1 207 ILE n 1 208 HIS n 1 209 VAL n 1 210 THR n 1 211 ASP n 1 212 ASN n 1 213 TYR n 1 214 LEU n 1 215 GLN n 1 216 GLU n 1 217 ALA n 1 218 LEU n 1 219 HIS n 1 220 MSE n 1 221 VAL n 1 222 GLU n 1 223 MSE n 1 224 ASN n 1 225 MSE n 1 226 PRO n 1 227 ARG n 1 228 ILE n 1 229 LEU n 1 230 ARG n 1 231 VAL n 1 232 LYS n 1 233 ASN n 1 234 GLY n 1 235 GLU n 1 236 VAL n 1 237 GLU n 1 238 PRO n 1 239 ASP n 1 240 ARG n 1 241 CYS n 1 242 GLU n 1 243 LEU n 1 244 CYS n 1 245 ASP n 1 246 CYS n 1 247 CYS n 1 248 ARG n 1 249 HIS n 1 250 ASN n 1 251 ARG n 1 252 VAL n 1 253 LEU n 1 254 LYS n 1 255 LYS n 1 256 PRO n 1 257 ILE n 1 258 SER n 1 259 ILE n 1 260 MSE n 1 261 ASP n 1 262 LEU n 1 263 THR n 1 264 ALA n 1 265 GLY n 1 266 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'EUBREC_2131, RER070207002219' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 33656 / VPI 0990' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Eubacterium rectale' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 515619 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HK100 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code C4ZCC6_EUBR3 _struct_ref.pdbx_db_accession C4ZCC6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MQLTSENYYSQEANKEYMSVSGYKDFAGTYGKMPCEFYGMEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKDNPEIF TQKGELKANFKQAEEIIARIERDEYFMKYMSGQKQVIMTGELFGAKWKIKMDSYIPGVAIVDLKVMASITDLKWVKDIGY LDFVRYWGYDIQGAVYQEIVRQNTGEKLPFFIAGATKQTEPDIRIIHVTDNYLQEALHMVEMNMPRILRVKNGEVEPDRC ELCDCCRHNRVLKKPISIMDLTAGI ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L0A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 266 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession C4ZCC6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 265 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 265 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3L0A _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code C4ZCC6 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PE4 non-polymer . '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' 'POLYETHYLENE GLYCOL PEG4000' 'C16 H34 O8' 354.436 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TRS non-polymer . 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 'TRIS BUFFER' 'C4 H12 N O3 1' 122.143 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 3L0A # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.48 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 50.48 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2000M MgCl2, 30.0000% PEG-4000, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'Flat collimating mirror, toroid focusing mirror' _diffrn_detector.pdbx_collection_date 2009-05-14 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91162 1.0 2 0.97936 1.0 3 0.97922 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91162,0.97936,0.97922 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 3L0A _reflns.d_resolution_high 2.19 _reflns.d_resolution_low 44.108 _reflns.number_obs 15931 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 17.840 _reflns.percent_possible_obs 100.000 _reflns.B_iso_Wilson_estimate 54.969 _reflns.observed_criterion_sigma_I -3.00 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.19 2.27 7283 ? 1608 0.576 2.0 ? ? ? ? ? 100.00 1 1 2.27 2.36 12732 ? 1560 0.572 3.4 ? ? ? ? ? 100.00 2 1 2.36 2.47 13246 ? 1623 0.445 4.3 ? ? ? ? ? 100.00 3 1 2.47 2.60 12808 ? 1567 0.296 6.2 ? ? ? ? ? 100.00 4 1 2.60 2.76 13412 ? 1561 0.230 8.6 ? ? ? ? ? 100.00 5 1 2.76 2.97 17747 ? 1564 0.213 12.9 ? ? ? ? ? 99.90 6 1 2.97 3.27 20031 ? 1614 0.134 20.2 ? ? ? ? ? 99.90 7 1 3.27 3.74 19400 ? 1583 0.069 31.9 ? ? ? ? ? 100.00 8 1 3.74 4.70 19143 ? 1594 0.050 41.5 ? ? ? ? ? 100.00 9 1 4.70 44.108 18984 ? 1658 0.047 45.8 ? ? ? ? ? 99.80 10 1 # _refine.entry_id 3L0A _refine.ls_d_res_high 2.190 _refine.ls_d_res_low 44.108 _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.970 _refine.ls_number_reflns_obs 15916 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 4. A ZINC ION HAS BEEN MODELED BASED ON THE CHEMICAL ENVIRONMENT AND ANOMALOUS DIFFERENCE FOURIERS. 5. PEG-4000 FRAGMENT (PE4) AND TROMETHAMINE (TRS) MOLECULE FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.210 _refine.ls_R_factor_R_work 0.208 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.250 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.000 _refine.ls_number_reflns_R_free 793 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 26.641 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 4.320 _refine.aniso_B[2][2] 4.320 _refine.aniso_B[3][3] -6.480 _refine.aniso_B[1][2] 2.160 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.953 _refine.correlation_coeff_Fo_to_Fc_free 0.939 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.282 _refine.pdbx_overall_ESU_R_Free 0.216 _refine.overall_SU_ML 0.197 _refine.overall_SU_B 17.408 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.400 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 103.25 _refine.B_iso_min 2.00 _refine.occupancy_max 1.00 _refine.occupancy_min 0.50 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2119 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 2236 _refine_hist.d_res_high 2.190 _refine_hist.d_res_low 44.108 # loop_ _refine_ls_restr.type _refine_ls_restr.pdbx_refine_id _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 'X-RAY DIFFRACTION' 2216 0.018 0.022 ? ? r_bond_other_d 'X-RAY DIFFRACTION' 1539 0.001 0.020 ? ? r_angle_refined_deg 'X-RAY DIFFRACTION' 2986 1.561 1.968 ? ? r_angle_other_deg 'X-RAY DIFFRACTION' 3748 0.930 3.000 ? ? r_dihedral_angle_1_deg 'X-RAY DIFFRACTION' 273 5.988 5.000 ? ? r_dihedral_angle_2_deg 'X-RAY DIFFRACTION' 105 40.353 24.476 ? ? r_dihedral_angle_3_deg 'X-RAY DIFFRACTION' 398 17.098 15.000 ? ? r_dihedral_angle_4_deg 'X-RAY DIFFRACTION' 12 15.778 15.000 ? ? r_chiral_restr 'X-RAY DIFFRACTION' 313 0.092 0.200 ? ? r_gen_planes_refined 'X-RAY DIFFRACTION' 2454 0.005 0.020 ? ? r_gen_planes_other 'X-RAY DIFFRACTION' 454 0.001 0.020 ? ? r_mcbond_it 'X-RAY DIFFRACTION' 1334 0.728 1.500 ? ? r_mcbond_other 'X-RAY DIFFRACTION' 547 0.154 1.500 ? ? r_mcangle_it 'X-RAY DIFFRACTION' 2145 1.342 2.000 ? ? r_scbond_it 'X-RAY DIFFRACTION' 882 2.264 3.000 ? ? r_scangle_it 'X-RAY DIFFRACTION' 837 3.422 4.500 ? ? # _refine_ls_shell.d_res_high 2.190 _refine_ls_shell.d_res_low 2.247 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.920 _refine_ls_shell.number_reflns_R_work 1117 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.278 _refine_ls_shell.R_factor_R_free 0.290 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 60 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1177 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3L0A _struct.title 'Crystal structure of Putative exonuclease (RER070207002219) from Eubacterium rectale at 2.19 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;RER070207002219, Putative exonuclease, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, HYDROLASE ; _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.entry_id 3L0A # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ;CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A TRIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 11 ? TYR A 18 ? SER A 10 TYR A 17 1 ? 8 HELX_P HELX_P2 2 VAL A 21 ? GLY A 29 ? VAL A 20 GLY A 28 1 ? 9 HELX_P HELX_P3 3 CYS A 36 ? ASN A 45 ? CYS A 35 ASN A 44 1 ? 10 HELX_P HELX_P4 4 SER A 53 ? GLY A 68 ? SER A 52 GLY A 67 1 ? 16 HELX_P HELX_P5 5 SER A 69 ? ASN A 77 ? SER A 68 ASN A 76 1 ? 9 HELX_P HELX_P6 6 PRO A 78 ? PHE A 81 ? PRO A 77 PHE A 80 5 ? 4 HELX_P HELX_P7 7 LYS A 88 ? ARG A 103 ? LYS A 87 ARG A 102 1 ? 16 HELX_P HELX_P8 8 ASP A 104 ? MSE A 111 ? ASP A 103 MSE A 110 1 ? 8 HELX_P HELX_P9 9 ASP A 163 ? TRP A 168 ? ASP A 162 TRP A 167 1 ? 6 HELX_P HELX_P10 10 GLY A 169 ? GLY A 186 ? GLY A 168 GLY A 185 1 ? 18 HELX_P HELX_P11 11 THR A 210 ? ASN A 233 ? THR A 209 ASN A 232 1 ? 24 HELX_P HELX_P12 12 CYS A 244 ? ARG A 251 ? CYS A 243 ARG A 250 1 ? 8 HELX_P HELX_P13 13 SER A 258 ? ALA A 264 ? SER A 257 ALA A 263 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A GLN 3 N ? ? A MSE 1 A GLN 2 1_555 ? ? ? ? ? ? ? 1.334 ? ? covale3 covale both ? A TYR 18 C ? ? ? 1_555 A MSE 19 N ? ? A TYR 17 A MSE 18 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale4 covale both ? A MSE 19 C ? ? ? 1_555 A SER 20 N ? ? A MSE 18 A SER 19 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale5 covale both ? A LYS 33 C ? ? ? 1_555 A MSE 34 N ? ? A LYS 32 A MSE 33 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale6 covale both ? A MSE 34 C ? ? ? 1_555 A PRO 35 N ? ? A MSE 33 A PRO 34 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale7 covale both ? A GLY 40 C ? ? ? 1_555 A MSE 41 N ? ? A GLY 39 A MSE 40 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale8 covale both ? A MSE 41 C ? ? ? 1_555 A GLU 42 N ? ? A MSE 40 A GLU 41 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale9 covale both ? A PHE 107 C ? ? ? 1_555 A MSE 108 N ? ? A PHE 106 A MSE 107 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale10 covale both ? A MSE 108 C ? ? ? 1_555 A LYS 109 N ? ? A MSE 107 A LYS 108 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale11 covale both ? A TYR 110 C ? ? ? 1_555 A MSE 111 N ? ? A TYR 109 A MSE 110 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale12 covale both ? A MSE 111 C ? ? ? 1_555 A SER 112 N ? ? A MSE 110 A SER 111 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale13 covale both ? A ILE 118 C ? ? ? 1_555 A MSE 119 N ? ? A ILE 117 A MSE 118 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale14 covale both ? A MSE 119 C ? ? ? 1_555 A THR 120 N ? ? A MSE 118 A THR 119 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale15 covale both ? A LYS 131 C ? ? ? 1_555 A MSE 132 N ? ? A LYS 130 A MSE 131 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale16 covale both ? A MSE 132 C ? ? ? 1_555 A ASP 133 N ? ? A MSE 131 A ASP 132 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale17 covale both ? A VAL 146 C ? ? ? 1_555 A MSE 147 N ? ? A VAL 145 A MSE 146 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale18 covale both ? A MSE 147 C ? ? ? 1_555 A ALA 148 N ? ? A MSE 146 A ALA 147 1_555 ? ? ? ? ? ? ? 1.341 ? ? covale19 covale both ? A HIS 219 C ? ? ? 1_555 A MSE 220 N ? ? A HIS 218 A MSE 219 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale20 covale both ? A MSE 220 C ? ? ? 1_555 A VAL 221 N ? ? A MSE 219 A VAL 220 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale21 covale both ? A GLU 222 C ? ? ? 1_555 A MSE 223 N ? ? A GLU 221 A MSE 222 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale22 covale both ? A MSE 223 C ? ? ? 1_555 A ASN 224 N ? ? A MSE 222 A ASN 223 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale23 covale both ? A ASN 224 C ? ? ? 1_555 A MSE 225 N ? ? A ASN 223 A MSE 224 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale24 covale both ? A MSE 225 C ? ? ? 1_555 A PRO 226 N ? ? A MSE 224 A PRO 225 1_555 ? ? ? ? ? ? ? 1.362 ? ? covale25 covale both ? A ILE 259 C ? ? ? 1_555 A MSE 260 N ? ? A ILE 258 A MSE 259 1_555 ? ? ? ? ? ? ? 1.354 ? ? covale26 covale both ? A MSE 260 C ? ? ? 1_555 A ASP 261 N ? ? A MSE 259 A ASP 260 1_555 ? ? ? ? ? ? ? 1.328 ? ? metalc1 metalc ? ? A CYS 36 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 35 A ZN 266 1_555 ? ? ? ? ? ? ? 2.161 ? ? metalc2 metalc ? ? A CYS 241 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 240 A ZN 266 1_555 ? ? ? ? ? ? ? 2.327 ? ? metalc3 metalc ? ? A CYS 244 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 243 A ZN 266 1_555 ? ? ? ? ? ? ? 2.249 ? ? metalc4 metalc ? ? A CYS 247 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 246 A ZN 266 1_555 ? ? ? ? ? ? ? 2.476 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 MSE A 19 ? SER A 20 ? MSE A 18 SER A 19 A 2 ALA A 126 ? ILE A 136 ? ALA A 125 ILE A 135 A 3 GLN A 114 ? LEU A 123 ? GLN A 113 LEU A 122 B 1 MSE A 19 ? SER A 20 ? MSE A 18 SER A 19 B 2 ALA A 126 ? ILE A 136 ? ALA A 125 ILE A 135 B 3 ALA A 140 ? MSE A 147 ? ALA A 139 MSE A 146 B 4 PHE A 191 ? THR A 197 ? PHE A 190 THR A 196 B 5 ILE A 204 ? VAL A 209 ? ILE A 203 VAL A 208 C 1 LYS A 154 ? VAL A 156 ? LYS A 153 VAL A 155 C 2 GLY A 160 ? LEU A 162 ? GLY A 159 LEU A 161 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N MSE A 19 ? N MSE A 18 O LYS A 127 ? O LYS A 126 A 2 3 O TRP A 128 ? O TRP A 127 N GLY A 121 ? N GLY A 120 B 1 2 N MSE A 19 ? N MSE A 18 O LYS A 127 ? O LYS A 126 B 2 3 N ILE A 136 ? N ILE A 135 O ALA A 140 ? O ALA A 139 B 3 4 N ASP A 143 ? N ASP A 142 O ALA A 194 ? O ALA A 193 B 4 5 N ILE A 193 ? N ILE A 192 O ILE A 207 ? O ILE A 206 C 1 2 N VAL A 156 ? N VAL A 155 O GLY A 160 ? O GLY A 159 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 266 ? 4 'BINDING SITE FOR RESIDUE ZN A 266' AC2 Software A TRS 267 ? 8 'BINDING SITE FOR RESIDUE TRS A 267' AC3 Software A PE4 268 ? 2 'BINDING SITE FOR RESIDUE PE4 A 268' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 36 ? CYS A 35 . ? 1_555 ? 2 AC1 4 CYS A 241 ? CYS A 240 . ? 1_555 ? 3 AC1 4 CYS A 244 ? CYS A 243 . ? 1_555 ? 4 AC1 4 CYS A 247 ? CYS A 246 . ? 1_555 ? 5 AC2 8 ASP A 63 ? ASP A 62 . ? 1_555 ? 6 AC2 8 GLN A 116 ? GLN A 115 . ? 1_555 ? 7 AC2 8 LYS A 131 ? LYS A 130 . ? 1_555 ? 8 AC2 8 ASP A 133 ? ASP A 132 . ? 1_555 ? 9 AC2 8 ASP A 143 ? ASP A 142 . ? 1_555 ? 10 AC2 8 LEU A 144 ? LEU A 143 . ? 1_555 ? 11 AC2 8 GLN A 173 ? GLN A 172 . ? 1_555 ? 12 AC2 8 TYR A 177 ? TYR A 176 . ? 1_555 ? 13 AC3 2 GLU A 86 ? GLU A 85 . ? 4_665 ? 14 AC3 2 TYR A 110 ? TYR A 109 . ? 1_555 ? # _atom_sites.entry_id 3L0A _atom_sites.fract_transf_matrix[1][1] 0.011332 _atom_sites.fract_transf_matrix[1][2] 0.006542 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013085 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014420 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 GLN 3 2 2 GLN GLN A . n A 1 4 LEU 4 3 3 LEU LEU A . n A 1 5 THR 5 4 4 THR THR A . n A 1 6 SER 6 5 5 SER SER A . n A 1 7 GLU 7 6 6 GLU GLU A . n A 1 8 ASN 8 7 7 ASN ASN A . n A 1 9 TYR 9 8 8 TYR TYR A . n A 1 10 TYR 10 9 9 TYR TYR A . n A 1 11 SER 11 10 10 SER SER A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 GLU 13 12 12 GLU GLU A . n A 1 14 ALA 14 13 13 ALA ALA A . n A 1 15 ASN 15 14 14 ASN ASN A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 TYR 18 17 17 TYR TYR A . n A 1 19 MSE 19 18 18 MSE MSE A . n A 1 20 SER 20 19 19 SER SER A . n A 1 21 VAL 21 20 20 VAL VAL A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 GLY 23 22 22 GLY GLY A . n A 1 24 TYR 24 23 23 TYR TYR A . n A 1 25 LYS 25 24 24 LYS LYS A . n A 1 26 ASP 26 25 25 ASP ASP A . n A 1 27 PHE 27 26 26 PHE PHE A . n A 1 28 ALA 28 27 27 ALA ALA A . n A 1 29 GLY 29 28 28 GLY GLY A . n A 1 30 THR 30 29 29 THR THR A . n A 1 31 TYR 31 30 30 TYR TYR A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 LYS 33 32 32 LYS LYS A . n A 1 34 MSE 34 33 33 MSE MSE A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 CYS 36 35 35 CYS CYS A . n A 1 37 GLU 37 36 36 GLU GLU A . n A 1 38 PHE 38 37 37 PHE PHE A . n A 1 39 TYR 39 38 38 TYR TYR A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 MSE 41 40 40 MSE MSE A . n A 1 42 GLU 42 41 41 GLU GLU A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 ASN 45 44 44 ASN ASN A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 ARG 47 46 46 ARG ARG A . n A 1 48 TRP 48 47 47 TRP TRP A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 GLU 51 50 50 GLU GLU A . n A 1 52 LYS 52 51 51 LYS LYS A . n A 1 53 SER 53 52 52 SER SER A . n A 1 54 THR 54 53 53 THR THR A . n A 1 55 ALA 55 54 54 ALA ALA A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 VAL 58 57 57 VAL VAL A . n A 1 59 GLY 59 58 58 GLY GLY A . n A 1 60 SER 60 59 59 SER SER A . n A 1 61 TYR 61 60 60 TYR TYR A . n A 1 62 VAL 62 61 61 VAL VAL A . n A 1 63 ASP 63 62 62 ASP ASP A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 PHE 66 65 65 PHE PHE A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 GLY 68 67 67 GLY GLY A . n A 1 69 SER 69 68 68 SER SER A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 GLN 72 71 71 GLN GLN A . n A 1 73 PHE 73 72 72 PHE PHE A . n A 1 74 LYS 74 73 73 LYS LYS A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 ASP 76 75 75 ASP ASP A . n A 1 77 ASN 77 76 76 ASN ASN A . n A 1 78 PRO 78 77 77 PRO PRO A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 ILE 80 79 79 ILE ILE A . n A 1 81 PHE 81 80 80 PHE PHE A . n A 1 82 THR 82 81 81 THR THR A . n A 1 83 GLN 83 82 82 GLN GLN A . n A 1 84 LYS 84 83 83 LYS LYS A . n A 1 85 GLY 85 84 84 GLY GLY A . n A 1 86 GLU 86 85 85 GLU GLU A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 LYS 88 87 87 LYS LYS A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 ASN 90 89 89 ASN ASN A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 LYS 92 91 91 LYS LYS A . n A 1 93 GLN 93 92 92 GLN GLN A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 GLU 95 94 94 GLU GLU A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 ILE 97 96 96 ILE ILE A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 ARG 100 99 99 ARG ARG A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 GLU 102 101 101 GLU GLU A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 ASP 104 103 103 ASP ASP A . n A 1 105 GLU 105 104 104 GLU GLU A . n A 1 106 TYR 106 105 105 TYR TYR A . n A 1 107 PHE 107 106 106 PHE PHE A . n A 1 108 MSE 108 107 107 MSE MSE A . n A 1 109 LYS 109 108 108 LYS LYS A . n A 1 110 TYR 110 109 109 TYR TYR A . n A 1 111 MSE 111 110 110 MSE MSE A . n A 1 112 SER 112 111 111 SER SER A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 GLN 114 113 113 GLN GLN A . n A 1 115 LYS 115 114 114 LYS LYS A . n A 1 116 GLN 116 115 115 GLN GLN A . n A 1 117 VAL 117 116 116 VAL VAL A . n A 1 118 ILE 118 117 117 ILE ILE A . n A 1 119 MSE 119 118 118 MSE MSE A . n A 1 120 THR 120 119 119 THR THR A . n A 1 121 GLY 121 120 120 GLY GLY A . n A 1 122 GLU 122 121 121 GLU GLU A . n A 1 123 LEU 123 122 122 LEU LEU A . n A 1 124 PHE 124 123 123 PHE PHE A . n A 1 125 GLY 125 124 124 GLY GLY A . n A 1 126 ALA 126 125 125 ALA ALA A . n A 1 127 LYS 127 126 126 LYS LYS A . n A 1 128 TRP 128 127 127 TRP TRP A . n A 1 129 LYS 129 128 128 LYS LYS A . n A 1 130 ILE 130 129 129 ILE ILE A . n A 1 131 LYS 131 130 130 LYS LYS A . n A 1 132 MSE 132 131 131 MSE MSE A . n A 1 133 ASP 133 132 132 ASP ASP A . n A 1 134 SER 134 133 133 SER SER A . n A 1 135 TYR 135 134 134 TYR TYR A . n A 1 136 ILE 136 135 135 ILE ILE A . n A 1 137 PRO 137 136 136 PRO PRO A . n A 1 138 GLY 138 137 137 GLY GLY A . n A 1 139 VAL 139 138 138 VAL VAL A . n A 1 140 ALA 140 139 139 ALA ALA A . n A 1 141 ILE 141 140 140 ILE ILE A . n A 1 142 VAL 142 141 141 VAL VAL A . n A 1 143 ASP 143 142 142 ASP ASP A . n A 1 144 LEU 144 143 143 LEU LEU A . n A 1 145 LYS 145 144 144 LYS LYS A . n A 1 146 VAL 146 145 145 VAL VAL A . n A 1 147 MSE 147 146 146 MSE MSE A . n A 1 148 ALA 148 147 147 ALA ALA A . n A 1 149 SER 149 148 148 SER SER A . n A 1 150 ILE 150 149 149 ILE ILE A . n A 1 151 THR 151 150 150 THR THR A . n A 1 152 ASP 152 151 151 ASP ASP A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 LYS 154 153 153 LYS LYS A . n A 1 155 TRP 155 154 154 TRP TRP A . n A 1 156 VAL 156 155 155 VAL VAL A . n A 1 157 LYS 157 156 156 LYS LYS A . n A 1 158 ASP 158 157 157 ASP ASP A . n A 1 159 ILE 159 158 158 ILE ILE A . n A 1 160 GLY 160 159 159 GLY GLY A . n A 1 161 TYR 161 160 160 TYR TYR A . n A 1 162 LEU 162 161 161 LEU LEU A . n A 1 163 ASP 163 162 162 ASP ASP A . n A 1 164 PHE 164 163 163 PHE PHE A . n A 1 165 VAL 165 164 164 VAL VAL A . n A 1 166 ARG 166 165 165 ARG ARG A . n A 1 167 TYR 167 166 166 TYR TYR A . n A 1 168 TRP 168 167 167 TRP TRP A . n A 1 169 GLY 169 168 168 GLY GLY A . n A 1 170 TYR 170 169 169 TYR TYR A . n A 1 171 ASP 171 170 170 ASP ASP A . n A 1 172 ILE 172 171 171 ILE ILE A . n A 1 173 GLN 173 172 172 GLN GLN A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 ALA 175 174 174 ALA ALA A . n A 1 176 VAL 176 175 175 VAL VAL A . n A 1 177 TYR 177 176 176 TYR TYR A . n A 1 178 GLN 178 177 177 GLN GLN A . n A 1 179 GLU 179 178 178 GLU GLU A . n A 1 180 ILE 180 179 179 ILE ILE A . n A 1 181 VAL 181 180 180 VAL VAL A . n A 1 182 ARG 182 181 181 ARG ARG A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 ASN 184 183 183 ASN ASN A . n A 1 185 THR 185 184 184 THR THR A . n A 1 186 GLY 186 185 185 GLY GLY A . n A 1 187 GLU 187 186 186 GLU GLU A . n A 1 188 LYS 188 187 187 LYS LYS A . n A 1 189 LEU 189 188 188 LEU LEU A . n A 1 190 PRO 190 189 189 PRO PRO A . n A 1 191 PHE 191 190 190 PHE PHE A . n A 1 192 PHE 192 191 191 PHE PHE A . n A 1 193 ILE 193 192 192 ILE ILE A . n A 1 194 ALA 194 193 193 ALA ALA A . n A 1 195 GLY 195 194 194 GLY GLY A . n A 1 196 ALA 196 195 195 ALA ALA A . n A 1 197 THR 197 196 196 THR THR A . n A 1 198 LYS 198 197 197 LYS LYS A . n A 1 199 GLN 199 198 198 GLN GLN A . n A 1 200 THR 200 199 199 THR THR A . n A 1 201 GLU 201 200 200 GLU GLU A . n A 1 202 PRO 202 201 201 PRO PRO A . n A 1 203 ASP 203 202 202 ASP ASP A . n A 1 204 ILE 204 203 203 ILE ILE A . n A 1 205 ARG 205 204 204 ARG ARG A . n A 1 206 ILE 206 205 205 ILE ILE A . n A 1 207 ILE 207 206 206 ILE ILE A . n A 1 208 HIS 208 207 207 HIS HIS A . n A 1 209 VAL 209 208 208 VAL VAL A . n A 1 210 THR 210 209 209 THR THR A . n A 1 211 ASP 211 210 210 ASP ASP A . n A 1 212 ASN 212 211 211 ASN ASN A . n A 1 213 TYR 213 212 212 TYR TYR A . n A 1 214 LEU 214 213 213 LEU LEU A . n A 1 215 GLN 215 214 214 GLN GLN A . n A 1 216 GLU 216 215 215 GLU GLU A . n A 1 217 ALA 217 216 216 ALA ALA A . n A 1 218 LEU 218 217 217 LEU LEU A . n A 1 219 HIS 219 218 218 HIS HIS A . n A 1 220 MSE 220 219 219 MSE MSE A . n A 1 221 VAL 221 220 220 VAL VAL A . n A 1 222 GLU 222 221 221 GLU GLU A . n A 1 223 MSE 223 222 222 MSE MSE A . n A 1 224 ASN 224 223 223 ASN ASN A . n A 1 225 MSE 225 224 224 MSE MSE A . n A 1 226 PRO 226 225 225 PRO PRO A . n A 1 227 ARG 227 226 226 ARG ARG A . n A 1 228 ILE 228 227 227 ILE ILE A . n A 1 229 LEU 229 228 228 LEU LEU A . n A 1 230 ARG 230 229 229 ARG ARG A . n A 1 231 VAL 231 230 230 VAL VAL A . n A 1 232 LYS 232 231 231 LYS LYS A . n A 1 233 ASN 233 232 232 ASN ASN A . n A 1 234 GLY 234 233 233 GLY GLY A . n A 1 235 GLU 235 234 234 GLU GLU A . n A 1 236 VAL 236 235 235 VAL VAL A . n A 1 237 GLU 237 236 236 GLU GLU A . n A 1 238 PRO 238 237 237 PRO PRO A . n A 1 239 ASP 239 238 238 ASP ASP A . n A 1 240 ARG 240 239 239 ARG ARG A . n A 1 241 CYS 241 240 240 CYS CYS A . n A 1 242 GLU 242 241 241 GLU GLU A . n A 1 243 LEU 243 242 242 LEU LEU A . n A 1 244 CYS 244 243 243 CYS CYS A . n A 1 245 ASP 245 244 244 ASP ASP A . n A 1 246 CYS 246 245 245 CYS CYS A . n A 1 247 CYS 247 246 246 CYS CYS A . n A 1 248 ARG 248 247 247 ARG ARG A . n A 1 249 HIS 249 248 248 HIS HIS A . n A 1 250 ASN 250 249 249 ASN ASN A . n A 1 251 ARG 251 250 250 ARG ARG A . n A 1 252 VAL 252 251 251 VAL VAL A . n A 1 253 LEU 253 252 252 LEU LEU A . n A 1 254 LYS 254 253 253 LYS LYS A . n A 1 255 LYS 255 254 254 LYS LYS A . n A 1 256 PRO 256 255 255 PRO PRO A . n A 1 257 ILE 257 256 256 ILE ILE A . n A 1 258 SER 258 257 257 SER SER A . n A 1 259 ILE 259 258 258 ILE ILE A . n A 1 260 MSE 260 259 259 MSE MSE A . n A 1 261 ASP 261 260 260 ASP ASP A . n A 1 262 LEU 262 261 261 LEU LEU A . n A 1 263 THR 263 262 262 THR THR A . n A 1 264 ALA 264 263 263 ALA ALA A . n A 1 265 GLY 265 264 264 GLY GLY A . n A 1 266 ILE 266 265 265 ILE ILE A . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 266 1 ZN ZN A . C 3 TRS 1 267 2 TRS TRS A . D 4 PE4 1 268 3 PE4 PE4 A . E 5 HOH 1 269 4 HOH HOH A . E 5 HOH 2 270 5 HOH HOH A . E 5 HOH 3 271 6 HOH HOH A . E 5 HOH 4 272 7 HOH HOH A . E 5 HOH 5 273 8 HOH HOH A . E 5 HOH 6 274 9 HOH HOH A . E 5 HOH 7 275 10 HOH HOH A . E 5 HOH 8 276 11 HOH HOH A . E 5 HOH 9 277 12 HOH HOH A . E 5 HOH 10 278 13 HOH HOH A . E 5 HOH 11 279 14 HOH HOH A . E 5 HOH 12 280 15 HOH HOH A . E 5 HOH 13 281 16 HOH HOH A . E 5 HOH 14 282 17 HOH HOH A . E 5 HOH 15 283 18 HOH HOH A . E 5 HOH 16 284 19 HOH HOH A . E 5 HOH 17 285 20 HOH HOH A . E 5 HOH 18 286 21 HOH HOH A . E 5 HOH 19 287 22 HOH HOH A . E 5 HOH 20 288 23 HOH HOH A . E 5 HOH 21 289 24 HOH HOH A . E 5 HOH 22 290 25 HOH HOH A . E 5 HOH 23 291 26 HOH HOH A . E 5 HOH 24 292 27 HOH HOH A . E 5 HOH 25 293 28 HOH HOH A . E 5 HOH 26 294 29 HOH HOH A . E 5 HOH 27 295 30 HOH HOH A . E 5 HOH 28 296 31 HOH HOH A . E 5 HOH 29 297 32 HOH HOH A . E 5 HOH 30 298 33 HOH HOH A . E 5 HOH 31 299 34 HOH HOH A . E 5 HOH 32 300 35 HOH HOH A . E 5 HOH 33 301 36 HOH HOH A . E 5 HOH 34 302 37 HOH HOH A . E 5 HOH 35 303 38 HOH HOH A . E 5 HOH 36 304 39 HOH HOH A . E 5 HOH 37 305 40 HOH HOH A . E 5 HOH 38 306 41 HOH HOH A . E 5 HOH 39 307 42 HOH HOH A . E 5 HOH 40 308 43 HOH HOH A . E 5 HOH 41 309 44 HOH HOH A . E 5 HOH 42 310 45 HOH HOH A . E 5 HOH 43 311 46 HOH HOH A . E 5 HOH 44 312 47 HOH HOH A . E 5 HOH 45 313 48 HOH HOH A . E 5 HOH 46 314 49 HOH HOH A . E 5 HOH 47 315 50 HOH HOH A . E 5 HOH 48 316 51 HOH HOH A . E 5 HOH 49 317 52 HOH HOH A . E 5 HOH 50 318 53 HOH HOH A . E 5 HOH 51 319 54 HOH HOH A . E 5 HOH 52 320 55 HOH HOH A . E 5 HOH 53 321 56 HOH HOH A . E 5 HOH 54 322 57 HOH HOH A . E 5 HOH 55 323 58 HOH HOH A . E 5 HOH 56 324 59 HOH HOH A . E 5 HOH 57 325 60 HOH HOH A . E 5 HOH 58 326 61 HOH HOH A . E 5 HOH 59 327 62 HOH HOH A . E 5 HOH 60 328 63 HOH HOH A . E 5 HOH 61 329 64 HOH HOH A . E 5 HOH 62 330 65 HOH HOH A . E 5 HOH 63 331 66 HOH HOH A . E 5 HOH 64 332 67 HOH HOH A . E 5 HOH 65 333 68 HOH HOH A . E 5 HOH 66 334 69 HOH HOH A . E 5 HOH 67 335 70 HOH HOH A . E 5 HOH 68 336 71 HOH HOH A . E 5 HOH 69 337 72 HOH HOH A . E 5 HOH 70 338 73 HOH HOH A . E 5 HOH 71 339 74 HOH HOH A . E 5 HOH 72 340 75 HOH HOH A . E 5 HOH 73 341 76 HOH HOH A . E 5 HOH 74 342 77 HOH HOH A . E 5 HOH 75 343 78 HOH HOH A . E 5 HOH 76 344 79 HOH HOH A . E 5 HOH 77 345 80 HOH HOH A . E 5 HOH 78 346 81 HOH HOH A . E 5 HOH 79 347 82 HOH HOH A . E 5 HOH 80 348 83 HOH HOH A . E 5 HOH 81 349 84 HOH HOH A . E 5 HOH 82 350 85 HOH HOH A . E 5 HOH 83 351 86 HOH HOH A . E 5 HOH 84 352 87 HOH HOH A . E 5 HOH 85 353 88 HOH HOH A . E 5 HOH 86 354 89 HOH HOH A . E 5 HOH 87 355 90 HOH HOH A . E 5 HOH 88 356 91 HOH HOH A . E 5 HOH 89 357 92 HOH HOH A . E 5 HOH 90 358 93 HOH HOH A . E 5 HOH 91 359 94 HOH HOH A . E 5 HOH 92 360 95 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 19 A MSE 18 ? MET SELENOMETHIONINE 3 A MSE 34 A MSE 33 ? MET SELENOMETHIONINE 4 A MSE 41 A MSE 40 ? MET SELENOMETHIONINE 5 A MSE 108 A MSE 107 ? MET SELENOMETHIONINE 6 A MSE 111 A MSE 110 ? MET SELENOMETHIONINE 7 A MSE 119 A MSE 118 ? MET SELENOMETHIONINE 8 A MSE 132 A MSE 131 ? MET SELENOMETHIONINE 9 A MSE 147 A MSE 146 ? MET SELENOMETHIONINE 10 A MSE 220 A MSE 219 ? MET SELENOMETHIONINE 11 A MSE 223 A MSE 222 ? MET SELENOMETHIONINE 12 A MSE 225 A MSE 224 ? MET SELENOMETHIONINE 13 A MSE 260 A MSE 259 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7390 ? 1 MORE -4 ? 1 'SSA (A^2)' 40390 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 44.1240000000 0.8660254038 -0.5000000000 0.0000000000 76.4250098332 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -44.1240000000 -0.8660254038 -0.5000000000 0.0000000000 76.4250098332 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 SG ? A CYS 36 ? A CYS 35 ? 1_555 ZN ? B ZN . ? A ZN 266 ? 1_555 SG ? A CYS 241 ? A CYS 240 ? 1_555 103.9 ? 2 SG ? A CYS 36 ? A CYS 35 ? 1_555 ZN ? B ZN . ? A ZN 266 ? 1_555 SG ? A CYS 244 ? A CYS 243 ? 1_555 120.9 ? 3 SG ? A CYS 241 ? A CYS 240 ? 1_555 ZN ? B ZN . ? A ZN 266 ? 1_555 SG ? A CYS 244 ? A CYS 243 ? 1_555 106.1 ? 4 SG ? A CYS 36 ? A CYS 35 ? 1_555 ZN ? B ZN . ? A ZN 266 ? 1_555 SG ? A CYS 247 ? A CYS 246 ? 1_555 106.3 ? 5 SG ? A CYS 241 ? A CYS 240 ? 1_555 ZN ? B ZN . ? A ZN 266 ? 1_555 SG ? A CYS 247 ? A CYS 246 ? 1_555 116.0 ? 6 SG ? A CYS 244 ? A CYS 243 ? 1_555 ZN ? B ZN . ? A ZN 266 ? 1_555 SG ? A CYS 247 ? A CYS 246 ? 1_555 104.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-01-12 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2017-11-01 4 'Structure model' 1 3 2019-07-17 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Version format compliance' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' software 3 4 'Structure model' struct_conn 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_software.classification' 4 4 'Structure model' '_software.contact_author' 5 4 'Structure model' '_software.contact_author_email' 6 4 'Structure model' '_software.language' 7 4 'Structure model' '_software.location' 8 4 'Structure model' '_software.name' 9 4 'Structure model' '_software.type' 10 4 'Structure model' '_software.version' 11 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 12 5 'Structure model' '_database_2.pdbx_DOI' 13 5 'Structure model' '_database_2.pdbx_database_accession' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.value' 19 5 'Structure model' '_struct_conn.conn_type_id' 20 5 'Structure model' '_struct_conn.id' 21 5 'Structure model' '_struct_conn.pdbx_dist_value' 22 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 23 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 34 5 'Structure model' '_struct_ref_seq_dif.details' 35 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 36 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 37 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 9.6610 _pdbx_refine_tls.origin_y 28.2770 _pdbx_refine_tls.origin_z 42.8470 _pdbx_refine_tls.T[1][1] 0.1724 _pdbx_refine_tls.T[2][2] 0.2190 _pdbx_refine_tls.T[3][3] 0.4834 _pdbx_refine_tls.T[1][2] 0.0666 _pdbx_refine_tls.T[1][3] -0.0252 _pdbx_refine_tls.T[2][3] 0.0317 _pdbx_refine_tls.L[1][1] 2.2459 _pdbx_refine_tls.L[2][2] 0.0464 _pdbx_refine_tls.L[3][3] 1.2091 _pdbx_refine_tls.L[1][2] 0.1111 _pdbx_refine_tls.L[1][3] -0.4269 _pdbx_refine_tls.L[2][3] 0.1954 _pdbx_refine_tls.S[1][1] 0.0001 _pdbx_refine_tls.S[2][2] 0.0084 _pdbx_refine_tls.S[3][3] -0.0086 _pdbx_refine_tls.S[1][2] -0.0246 _pdbx_refine_tls.S[1][3] -0.3791 _pdbx_refine_tls.S[2][3] 0.0208 _pdbx_refine_tls.S[2][1] 0.0938 _pdbx_refine_tls.S[3][1] 0.4052 _pdbx_refine_tls.S[3][2] 0.2090 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 0 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 265 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal REFMAC 5.5.0102 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 1 PHENIX . ? package 'P.D. Adams' PDAdams@lbl.gov refinement http://www.phenix-online.org/ C++ ? 2 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 3 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 4 XSCALE . ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 5 PDB_EXTRACT 3.006 'June 11, 2008' package PDB help@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 XDS . ? ? ? ? 'data reduction' ? ? ? 7 autoSHARP . ? ? ? ? phasing ? ? ? 8 # _pdbx_entry_details.entry_id 3L0A _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 99 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 99 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 99 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.71 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.41 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id VAL _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 138 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -133.91 _pdbx_validate_torsion.psi -47.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 2 ? CG ? A GLN 3 CG 2 1 Y 1 A GLN 2 ? CD ? A GLN 3 CD 3 1 Y 1 A GLN 2 ? OE1 ? A GLN 3 OE1 4 1 Y 1 A GLN 2 ? NE2 ? A GLN 3 NE2 5 1 Y 1 A GLU 48 ? CG ? A GLU 49 CG 6 1 Y 1 A GLU 48 ? CD ? A GLU 49 CD 7 1 Y 1 A GLU 48 ? OE1 ? A GLU 49 OE1 8 1 Y 1 A GLU 48 ? OE2 ? A GLU 49 OE2 9 1 Y 1 A GLU 50 ? CG ? A GLU 51 CG 10 1 Y 1 A GLU 50 ? CD ? A GLU 51 CD 11 1 Y 1 A GLU 50 ? OE1 ? A GLU 51 OE1 12 1 Y 1 A GLU 50 ? OE2 ? A GLU 51 OE2 13 1 Y 1 A LYS 51 ? CG ? A LYS 52 CG 14 1 Y 1 A LYS 51 ? CD ? A LYS 52 CD 15 1 Y 1 A LYS 51 ? CE ? A LYS 52 CE 16 1 Y 1 A LYS 51 ? NZ ? A LYS 52 NZ 17 1 Y 1 A LYS 83 ? CG ? A LYS 84 CG 18 1 Y 1 A LYS 83 ? CD ? A LYS 84 CD 19 1 Y 1 A LYS 83 ? CE ? A LYS 84 CE 20 1 Y 1 A LYS 83 ? NZ ? A LYS 84 NZ 21 1 Y 1 A GLN 214 ? CG ? A GLN 215 CG 22 1 Y 1 A GLN 214 ? CD ? A GLN 215 CD 23 1 Y 1 A GLN 214 ? OE1 ? A GLN 215 OE1 24 1 Y 1 A GLN 214 ? NE2 ? A GLN 215 NE2 25 1 Y 1 A GLU 215 ? CD ? A GLU 216 CD 26 1 Y 1 A GLU 215 ? OE1 ? A GLU 216 OE1 27 1 Y 1 A GLU 215 ? OE2 ? A GLU 216 OE2 28 1 Y 1 A GLU 236 ? CG ? A GLU 237 CG 29 1 Y 1 A GLU 236 ? CD ? A GLU 237 CD 30 1 Y 1 A GLU 236 ? OE1 ? A GLU 237 OE1 31 1 Y 1 A GLU 236 ? OE2 ? A GLU 237 OE2 32 1 Y 1 A LYS 253 ? CD ? A LYS 254 CD 33 1 Y 1 A LYS 253 ? CE ? A LYS 254 CE 34 1 Y 1 A LYS 253 ? NZ ? A LYS 254 NZ 35 1 Y 1 A ILE 265 ? CG1 ? A ILE 266 CG1 36 1 Y 1 A ILE 265 ? CG2 ? A ILE 266 CG2 37 1 Y 1 A ILE 265 ? CD1 ? A ILE 266 CD1 38 1 N 1 A PE4 268 ? C11 ? D PE4 1 C11 39 1 N 1 A PE4 268 ? C12 ? D PE4 1 C12 40 1 N 1 A PE4 268 ? O7 ? D PE4 1 O7 41 1 N 1 A PE4 268 ? C13 ? D PE4 1 C13 42 1 N 1 A PE4 268 ? C14 ? D PE4 1 C14 43 1 N 1 A PE4 268 ? O8 ? D PE4 1 O8 44 1 N 1 A PE4 268 ? C15 ? D PE4 1 C15 45 1 N 1 A PE4 268 ? C16 ? D PE4 1 C16 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRS 4 '2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL' PE4 5 water HOH #