HEADER REPLICATION 10-DEC-09 3L0W TITLE STRUCTURE OF SPLIT MONOUBIQUITINATED PCNA WITH UBIQUITIN IN POSITION TITLE 2 TWO COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N FRAGMENT; COMPND 5 SYNONYM: PCNA; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MONOUBIQUITINATED PROLIFERATING CELL NUCLEAR ANTIGEN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: UBI-C FRAGMENT; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: POL30, YBR0811, YBR088C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETDUET-1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 14 ORGANISM_TAXID: 4932; SOURCE 15 GENE: POL30, UBI1 & POL30, YBR0811, YBR088C; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: ROSSETTA; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PETDUET-1 KEYWDS REPLICATION, DNA DAMAGE, DNA REPAIR, DNA REPLICATION, DNA-BINDING, KEYWDS 2 ISOPEPTIDE BOND, NUCLEUS, UBL CONJUGATION EXPDTA X-RAY DIFFRACTION AUTHOR B.D.FREUDENTHAL,L.GAKHAR,S.RAMASWAMY,M.T.WASHINGTON REVDAT 4 06-SEP-23 3L0W 1 SEQADV REVDAT 3 02-AUG-17 3L0W 1 SOURCE REMARK REVDAT 2 21-APR-10 3L0W 1 JRNL REVDAT 1 23-MAR-10 3L0W 0 JRNL AUTH B.D.FREUDENTHAL,L.GAKHAR,S.RAMASWAMY,M.T.WASHINGTON JRNL TITL STRUCTURE OF MONOUBIQUITINATED PCNA AND IMPLICATIONS FOR JRNL TITL 2 TRANSLESION SYNTHESIS AND DNA POLYMERASE EXCHANGE. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 479 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20305653 JRNL DOI 10.1038/NSMB.1776 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 86.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 14567 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.279 REMARK 3 R VALUE (WORKING SET) : 0.277 REMARK 3 FREE R VALUE : 0.314 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 766 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.4130 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.4800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2590 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 88.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.421 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.365 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.201 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.875 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3255 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4385 ; 1.587 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 7.030 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 144 ;38.385 ;25.625 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 631 ;21.312 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;20.377 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2371 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2031 ; 0.810 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3296 ; 1.525 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1224 ; 1.769 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1089 ; 3.183 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 3L0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : SAGGITALLY FOCUSED MIRRORS REMARK 200 OPTICS : SAGGITALLY FOCUSED MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15333 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 86.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.740 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.38 REMARK 200 R MERGE FOR SHELL (I) : 0.60400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PLQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.04 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CITRATE, 3% ETHANOL, PH 6.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.25800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.25800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.25800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.25800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.25800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.25800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 61.25800 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 61.25800 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 61.25800 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 61.25800 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 61.25800 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 61.25800 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 61.25800 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 61.25800 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 61.25800 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 61.25800 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 61.25800 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 61.25800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY B 76 REMARK 465 GLY B 77 REMARK 465 GLY B 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 38 C - N - CA ANGL. DEV. = 9.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 21 -13.40 87.26 REMARK 500 CYS A 22 2.70 -153.53 REMARK 500 HIS A 64 137.47 -171.72 REMARK 500 ASN A 83 -15.14 65.68 REMARK 500 ASN A 84 -20.70 91.57 REMARK 500 GLU A 104 139.69 -173.35 REMARK 500 ASP A 105 -108.43 -102.77 REMARK 500 THR A 106 -73.32 -70.16 REMARK 500 LYS A 107 -135.37 -112.35 REMARK 500 ASP A 109 -77.84 -31.04 REMARK 500 GLU B 34 -1.21 -149.90 REMARK 500 GLU B 106 -8.74 -59.07 REMARK 500 SER B 157 75.90 41.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L0X RELATED DB: PDB REMARK 900 RELATED ID: 3L10 RELATED DB: PDB DBREF 3L0W A 1 163 UNP P15873 PCNA_YEAST 1 163 DBREF 3L0W B 1 76 UNP P61864 UBIQ_YEAST 1 76 DBREF 3L0W B 79 169 UNP P15873 PCNA_YEAST 165 255 SEQADV 3L0W HIS A -5 UNP P15873 EXPRESSION TAG SEQADV 3L0W HIS A -4 UNP P15873 EXPRESSION TAG SEQADV 3L0W HIS A -3 UNP P15873 EXPRESSION TAG SEQADV 3L0W HIS A -2 UNP P15873 EXPRESSION TAG SEQADV 3L0W HIS A -1 UNP P15873 EXPRESSION TAG SEQADV 3L0W HIS A 0 UNP P15873 EXPRESSION TAG SEQADV 3L0W GLY B 77 UNP P15873 LINKER SEQADV 3L0W GLY B 78 UNP P15873 LINKER SEQRES 1 A 169 HIS HIS HIS HIS HIS HIS MET LEU GLU ALA LYS PHE GLU SEQRES 2 A 169 GLU ALA SER LEU PHE LYS ARG ILE ILE ASP GLY PHE LYS SEQRES 3 A 169 ASP CYS VAL GLN LEU VAL ASN PHE GLN CYS LYS GLU ASP SEQRES 4 A 169 GLY ILE ILE ALA GLN ALA VAL ASP ASP SER ARG VAL LEU SEQRES 5 A 169 LEU VAL SER LEU GLU ILE GLY VAL GLU ALA PHE GLN GLU SEQRES 6 A 169 TYR ARG CYS ASP HIS PRO VAL THR LEU GLY MET ASP LEU SEQRES 7 A 169 THR SER LEU SER LYS ILE LEU ARG CYS GLY ASN ASN THR SEQRES 8 A 169 ASP THR LEU THR LEU ILE ALA ASP ASN THR PRO ASP SER SEQRES 9 A 169 ILE ILE LEU LEU PHE GLU ASP THR LYS LYS ASP ARG ILE SEQRES 10 A 169 ALA GLU TYR SER LEU LYS LEU MET ASP ILE ASP ALA ASP SEQRES 11 A 169 PHE LEU LYS ILE GLU GLU LEU GLN TYR ASP SER THR LEU SEQRES 12 A 169 SER LEU PRO SER SER GLU PHE SER LYS ILE VAL ARG ASP SEQRES 13 A 169 LEU SER GLN LEU SER ASP SER ILE ASN ILE MET ILE THR SEQRES 1 B 169 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 169 THR LEU GLU VAL GLU SER SER ASP THR ILE ASP ASN VAL SEQRES 3 B 169 LYS SER LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 169 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 169 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 169 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY GLY GLY SEQRES 7 B 169 GLU THR ILE LYS PHE VAL ALA ASP GLY ASP ILE GLY SER SEQRES 8 B 169 GLY SER VAL ILE ILE LYS PRO PHE VAL ASP MET GLU HIS SEQRES 9 B 169 PRO GLU THR SER ILE LYS LEU GLU MET ASP GLN PRO VAL SEQRES 10 B 169 ASP LEU THR PHE GLY ALA LYS TYR LEU LEU ASP ILE ILE SEQRES 11 B 169 LYS GLY SER SER LEU SER ASP ARG VAL GLY ILE ARG LEU SEQRES 12 B 169 SER SER GLU ALA PRO ALA LEU PHE GLN PHE ASP LEU LYS SEQRES 13 B 169 SER GLY PHE LEU GLN PHE PHE LEU ALA PRO LYS PHE ASN HELIX 1 1 GLU A 8 LYS A 20 1 13 HELIX 2 2 GLU A 55 PHE A 57 5 3 HELIX 3 3 LEU A 72 CYS A 81 1 10 HELIX 4 4 SER A 141 SER A 152 1 12 HELIX 5 5 THR B 22 GLY B 35 1 14 HELIX 6 6 THR B 55 ASN B 60 5 6 HELIX 7 7 HIS B 104 SER B 108 5 5 HELIX 8 8 ALA B 123 ILE B 130 1 8 HELIX 9 9 LYS B 131 SER B 136 5 6 SHEET 1 A 5 GLU A 59 ARG A 61 0 SHEET 2 A 5 LEU A 2 LYS A 5 -1 N LYS A 5 O GLU A 59 SHEET 3 A 5 THR A 89 ALA A 92 -1 O LEU A 90 N ALA A 4 SHEET 4 A 5 SER A 98 GLU A 104 -1 O ILE A 100 N ILE A 91 SHEET 5 A 5 ILE A 111 LYS A 117 -1 O TYR A 114 N LEU A 101 SHEET 1 B 3 VAL A 66 THR A 67 0 SHEET 2 B 3 LEU A 25 LYS A 31 -1 N CYS A 30 O VAL A 66 SHEET 3 B 3 MET A 70 ASP A 71 -1 O MET A 70 N VAL A 26 SHEET 1 C 9 VAL A 66 THR A 67 0 SHEET 2 C 9 LEU A 25 LYS A 31 -1 N CYS A 30 O VAL A 66 SHEET 3 C 9 GLY A 34 VAL A 40 -1 O ILE A 36 N GLN A 29 SHEET 4 C 9 LEU A 46 GLY A 53 -1 O VAL A 48 N ALA A 39 SHEET 5 C 9 GLY B 158 LEU B 164 -1 O GLN B 161 N SER A 49 SHEET 6 C 9 ALA B 149 LEU B 155 -1 N PHE B 151 O PHE B 162 SHEET 7 C 9 ARG B 138 LEU B 143 -1 N ARG B 142 O LEU B 150 SHEET 8 C 9 SER A 135 PRO A 140 -1 N LEU A 137 O ILE B 141 SHEET 9 C 9 LYS B 110 MET B 113 -1 O GLU B 112 N THR A 136 SHEET 1 D 4 SER B 91 ILE B 96 0 SHEET 2 D 4 THR B 80 ASP B 86 -1 N ALA B 85 O GLY B 92 SHEET 3 D 4 SER A 157 THR A 163 -1 N MET A 161 O LYS B 82 SHEET 4 D 4 VAL B 117 GLY B 122 -1 O PHE B 121 N ILE A 158 SHEET 1 E 5 THR B 12 GLU B 16 0 SHEET 2 E 5 GLN B 2 THR B 7 -1 N VAL B 5 O ILE B 13 SHEET 3 E 5 THR B 66 LEU B 71 1 O LEU B 69 N LYS B 6 SHEET 4 E 5 GLN B 41 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 E 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 CRYST1 122.516 122.516 122.516 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008162 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008162 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008162 0.00000