HEADER TRANSFERASE 10-DEC-09 3L16 TITLE DISCOVERY OF (THIENOPYRIMIDIN-2-YL)AMINOPYRIMIDINES AS POTENT, TITLE 2 SELECTIVE, AND ORALLY AVAILABLE PAN-PI3-KINASE AND DUAL PAN-PI3- TITLE 3 KINASE/MTOR INHIBITORS FOR THE TREATMENT OF CANCER COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT GAMMA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 144-1102; COMPND 6 SYNONYM: PI3-KINASE P110 SUBUNIT GAMMA, PTDINS-3-KINASE SUBUNIT P110, COMPND 7 PI3KGAMMA, PI3K, P120-PI3K; COMPND 8 EC: 2.7.1.153; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3CG; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS KINASE, ATP-BINDING, NUCLEOTIDE-BINDING, TRANSFERASE, PI3K-GAMMA P110 KEYWDS 2 GAMMA EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,C.WIESMANN REVDAT 4 06-SEP-23 3L16 1 REMARK SEQADV REVDAT 3 01-NOV-17 3L16 1 REMARK REVDAT 2 13-JUL-11 3L16 1 VERSN REVDAT 1 16-FEB-10 3L16 0 JRNL AUTH D.P.SUTHERLIN,D.SAMPATH,M.BERRY,G.CASTANEDO,Z.CHANG, JRNL AUTH 2 I.CHUCKOWREE,J.DOTSON,A.FOLKES,L.FRIEDMAN,R.GOLDSMITH, JRNL AUTH 3 T.HEFFRON,L.LEE,J.LESNICK,C.LEWIS,S.MATHIEU,J.NONOMIYA, JRNL AUTH 4 A.OLIVERO,J.PANG,W.W.PRIOR,L.SALPHATI,S.SIDERIS,Q.TIAN, JRNL AUTH 5 V.TSUI,N.C.WAN,S.WANG,C.WIESMANN,S.WONG,B.Y.ZHU JRNL TITL DISCOVERY OF (THIENOPYRIMIDIN-2-YL)AMINOPYRIMIDINES AS JRNL TITL 2 POTENT, SELECTIVE, AND ORALLY AVAILABLE PAN-PI3-KINASE AND JRNL TITL 3 DUAL PAN-PI3-KINASE/MTOR INHIBITORS FOR THE TREATMENT OF JRNL TITL 4 CANCER. JRNL REF J.MED.CHEM. V. 53 1086 2010 JRNL REFN ISSN 0022-2623 JRNL PMID 20050669 JRNL DOI 10.1021/JM901284W REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 22093 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.238 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 25 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.96 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1228 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6812 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.02000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 0.22000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.501 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.515 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 60.759 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6995 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 6407 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9466 ; 1.278 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14922 ; 0.784 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 833 ; 6.648 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 328 ;36.637 ;24.268 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1266 ;19.869 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;19.221 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1063 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7597 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1392 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1690 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6820 ; 0.178 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3377 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4147 ; 0.085 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 174 ; 0.171 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.033 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.163 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 33 ; 0.196 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4341 ; 2.772 ; 2.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1685 ; 0.417 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6804 ; 4.480 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3074 ; 1.990 ; 2.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2662 ; 3.186 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 143 A 1092 REMARK 3 ORIGIN FOR THE GROUP (A): 33.5082 47.0265 26.9144 REMARK 3 T TENSOR REMARK 3 T11: -0.1734 T22: -0.9115 REMARK 3 T33: -0.2782 T12: -0.0544 REMARK 3 T13: 0.0050 T23: 0.0420 REMARK 3 L TENSOR REMARK 3 L11: 6.5144 L22: 1.4047 REMARK 3 L33: 3.2474 L12: -1.2455 REMARK 3 L13: 0.9693 L23: -0.1834 REMARK 3 S TENSOR REMARK 3 S11: -0.1872 S12: 0.1556 S13: -0.0450 REMARK 3 S21: 0.1252 S22: 0.2056 S23: -0.0504 REMARK 3 S31: -0.3926 S32: 0.0235 S33: -0.0184 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056702. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27593 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1E8X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, 0.2M NH4SO4, 0.1M TRIS-HCL REMARK 280 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K, PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.31750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.69550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.31750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.69550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 254 REMARK 465 LYS A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 MET A 259 REMARK 465 ASP A 260 REMARK 465 ILE A 261 REMARK 465 PRO A 262 REMARK 465 GLU A 263 REMARK 465 SER A 264 REMARK 465 GLN A 265 REMARK 465 SER A 266 REMARK 465 TRP A 323 REMARK 465 PRO A 324 REMARK 465 LEU A 325 REMARK 465 VAL A 326 REMARK 465 ASP A 327 REMARK 465 ASP A 328 REMARK 465 CYS A 329 REMARK 465 THR A 330 REMARK 465 GLY A 331 REMARK 465 VAL A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 TYR A 335 REMARK 465 HIS A 336 REMARK 465 GLU A 337 REMARK 465 GLN A 338 REMARK 465 LEU A 339 REMARK 465 THR A 340 REMARK 465 ILE A 341 REMARK 465 HIS A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 ASP A 345 REMARK 465 HIS A 346 REMARK 465 GLU A 347 REMARK 465 SER A 348 REMARK 465 VAL A 349 REMARK 465 PHE A 350 REMARK 465 THR A 351 REMARK 465 VAL A 352 REMARK 465 SER A 353 REMARK 465 LEU A 354 REMARK 465 TRP A 355 REMARK 465 ASP A 356 REMARK 465 GLY A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 PRO A 439 REMARK 465 ALA A 440 REMARK 465 LEU A 441 REMARK 465 SER A 442 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 ALA A 447 REMARK 465 GLU A 448 REMARK 465 SER A 449 REMARK 465 PRO A 450 REMARK 465 SER A 451 REMARK 465 SER A 452 REMARK 465 GLU A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 VAL A 458 REMARK 465 GLN A 459 REMARK 465 LYS A 490 REMARK 465 GLY A 491 REMARK 465 GLU A 492 REMARK 465 ASP A 493 REMARK 465 GLN A 494 REMARK 465 GLY A 495 REMARK 465 SER A 496 REMARK 465 TYR A 523 REMARK 465 CYS A 524 REMARK 465 LEU A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 HIS A 532 REMARK 465 GLN A 533 REMARK 465 PRO A 534 REMARK 465 THR A 535 REMARK 465 PRO A 536 REMARK 465 ASP A 537 REMARK 465 PRO A 538 REMARK 465 GLU A 539 REMARK 465 GLY A 540 REMARK 465 ASP A 541 REMARK 465 ARG A 542 REMARK 465 VAL A 543 REMARK 465 ILE A 968 REMARK 465 LEU A 969 REMARK 465 GLY A 970 REMARK 465 ASN A 971 REMARK 465 TYR A 972 REMARK 465 LYS A 973 REMARK 465 SER A 974 REMARK 465 PHE A 975 REMARK 465 LEU A 976 REMARK 465 GLY A 977 REMARK 465 ILE A 978 REMARK 465 ASN A 979 REMARK 465 LYS A 980 REMARK 465 LEU A 1092 REMARK 465 GLY A 1093 REMARK 465 ILE A 1094 REMARK 465 LYS A 1095 REMARK 465 GLN A 1096 REMARK 465 GLY A 1097 REMARK 465 GLU A 1098 REMARK 465 LYS A 1099 REMARK 465 HIS A 1100 REMARK 465 SER A 1101 REMARK 465 ALA A 1102 REMARK 465 HIS A 1103 REMARK 465 HIS A 1104 REMARK 465 HIS A 1105 REMARK 465 HIS A 1106 REMARK 465 HIS A 1107 REMARK 465 HIS A 1108 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 143 CG SD CE REMARK 470 GLU A 322 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 165 26.43 -141.40 REMARK 500 ASN A 167 46.70 -107.77 REMARK 500 ALA A 216 41.94 -99.07 REMARK 500 ASN A 217 4.43 -159.59 REMARK 500 ASN A 218 51.70 39.28 REMARK 500 ARG A 226 88.31 -159.40 REMARK 500 SER A 227 -64.49 57.37 REMARK 500 SER A 230 112.94 -170.40 REMARK 500 MET A 252 -71.59 -128.95 REMARK 500 GLN A 268 49.94 -99.74 REMARK 500 ASP A 269 32.80 -149.03 REMARK 500 ASP A 278 43.70 -97.23 REMARK 500 GLU A 284 81.58 -59.08 REMARK 500 PRO A 374 141.33 -31.39 REMARK 500 ARG A 375 -77.51 -135.33 REMARK 500 ASN A 376 -59.50 -153.22 REMARK 500 GLN A 391 11.96 58.29 REMARK 500 LYS A 425 131.87 -33.67 REMARK 500 HIS A 471 -7.17 -45.02 REMARK 500 ASP A 509 77.36 -65.55 REMARK 500 PRO A 526 -165.65 -102.81 REMARK 500 ALA A 545 92.27 70.73 REMARK 500 ASN A 549 -11.20 -34.24 REMARK 500 PHE A 578 52.66 -102.39 REMARK 500 GLN A 629 -39.37 -39.19 REMARK 500 ASP A 632 -168.98 -78.63 REMARK 500 GLU A 649 -31.84 -38.93 REMARK 500 ASN A 688 119.60 -163.75 REMARK 500 PHE A 696 -65.16 -26.78 REMARK 500 LYS A 756 90.62 -162.09 REMARK 500 TYR A 757 103.18 -164.81 REMARK 500 ASP A 758 -147.38 72.48 REMARK 500 GLN A 775 -38.80 -38.61 REMARK 500 ASN A 776 -83.84 -77.48 REMARK 500 SER A 777 54.00 -107.38 REMARK 500 GLN A 778 -73.07 -152.44 REMARK 500 ASP A 788 68.61 -165.59 REMARK 500 ALA A 805 45.37 -102.29 REMARK 500 SER A 806 -145.76 -94.97 REMARK 500 LEU A 848 -49.47 -26.50 REMARK 500 LEU A 865 78.72 -117.31 REMARK 500 THR A 872 -30.99 -135.90 REMARK 500 SER A 894 -73.10 -6.16 REMARK 500 VAL A 896 -77.58 63.57 REMARK 500 ASN A 898 77.20 -52.31 REMARK 500 THR A 899 7.55 47.17 REMARK 500 THR A 957 21.51 -77.75 REMARK 500 ASP A 964 69.54 86.79 REMARK 500 LYS A1000 77.32 66.64 REMARK 500 LEU A1030 -70.96 -48.03 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 756 TYR A 757 142.91 REMARK 500 LYS A 807 LYS A 808 149.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JZX A 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L13 RELATED DB: PDB REMARK 900 DISCOVERY OF (THIENOPYRIMIDIN-2-YL)AMINOPYRIMIDINES AS POTENT, REMARK 900 SELECTIVE, AND ORALLY AVAILABLE PAN-PI3-KINASE AND DUAL PAN-PI3- REMARK 900 KINASE/MTOR INHIBITORS FOR THE TREATMENT OF CANCER REMARK 900 RELATED ID: 3L17 RELATED DB: PDB DBREF 3L16 A 144 1102 UNP P48736 PK3CG_HUMAN 144 1102 SEQADV 3L16 MET A 143 UNP P48736 EXPRESSION TAG SEQADV 3L16 HIS A 1103 UNP P48736 EXPRESSION TAG SEQADV 3L16 HIS A 1104 UNP P48736 EXPRESSION TAG SEQADV 3L16 HIS A 1105 UNP P48736 EXPRESSION TAG SEQADV 3L16 HIS A 1106 UNP P48736 EXPRESSION TAG SEQADV 3L16 HIS A 1107 UNP P48736 EXPRESSION TAG SEQADV 3L16 HIS A 1108 UNP P48736 EXPRESSION TAG SEQRES 1 A 966 MET SER GLU GLU SER GLN ALA PHE GLN ARG GLN LEU THR SEQRES 2 A 966 ALA LEU ILE GLY TYR ASP VAL THR ASP VAL SER ASN VAL SEQRES 3 A 966 HIS ASP ASP GLU LEU GLU PHE THR ARG ARG GLY LEU VAL SEQRES 4 A 966 THR PRO ARG MET ALA GLU VAL ALA SER ARG ASP PRO LYS SEQRES 5 A 966 LEU TYR ALA MET HIS PRO TRP VAL THR SER LYS PRO LEU SEQRES 6 A 966 PRO GLU TYR LEU TRP LYS LYS ILE ALA ASN ASN CYS ILE SEQRES 7 A 966 PHE ILE VAL ILE HIS ARG SER THR THR SER GLN THR ILE SEQRES 8 A 966 LYS VAL SER PRO ASP ASP THR PRO GLY ALA ILE LEU GLN SEQRES 9 A 966 SER PHE PHE THR LYS MET ALA LYS LYS LYS SER LEU MET SEQRES 10 A 966 ASP ILE PRO GLU SER GLN SER GLU GLN ASP PHE VAL LEU SEQRES 11 A 966 ARG VAL CYS GLY ARG ASP GLU TYR LEU VAL GLY GLU THR SEQRES 12 A 966 PRO ILE LYS ASN PHE GLN TRP VAL ARG HIS CYS LEU LYS SEQRES 13 A 966 ASN GLY GLU GLU ILE HIS VAL VAL LEU ASP THR PRO PRO SEQRES 14 A 966 ASP PRO ALA LEU ASP GLU VAL ARG LYS GLU GLU TRP PRO SEQRES 15 A 966 LEU VAL ASP ASP CYS THR GLY VAL THR GLY TYR HIS GLU SEQRES 16 A 966 GLN LEU THR ILE HIS GLY LYS ASP HIS GLU SER VAL PHE SEQRES 17 A 966 THR VAL SER LEU TRP ASP CYS ASP ARG LYS PHE ARG VAL SEQRES 18 A 966 LYS ILE ARG GLY ILE ASP ILE PRO VAL LEU PRO ARG ASN SEQRES 19 A 966 THR ASP LEU THR VAL PHE VAL GLU ALA ASN ILE GLN HIS SEQRES 20 A 966 GLY GLN GLN VAL LEU CYS GLN ARG ARG THR SER PRO LYS SEQRES 21 A 966 PRO PHE THR GLU GLU VAL LEU TRP ASN VAL TRP LEU GLU SEQRES 22 A 966 PHE SER ILE LYS ILE LYS ASP LEU PRO LYS GLY ALA LEU SEQRES 23 A 966 LEU ASN LEU GLN ILE TYR CYS GLY LYS ALA PRO ALA LEU SEQRES 24 A 966 SER SER LYS ALA SER ALA GLU SER PRO SER SER GLU SER SEQRES 25 A 966 LYS GLY LYS VAL GLN LEU LEU TYR TYR VAL ASN LEU LEU SEQRES 26 A 966 LEU ILE ASP HIS ARG PHE LEU LEU ARG ARG GLY GLU TYR SEQRES 27 A 966 VAL LEU HIS MET TRP GLN ILE SER GLY LYS GLY GLU ASP SEQRES 28 A 966 GLN GLY SER PHE ASN ALA ASP LYS LEU THR SER ALA THR SEQRES 29 A 966 ASN PRO ASP LYS GLU ASN SER MET SER ILE SER ILE LEU SEQRES 30 A 966 LEU ASP ASN TYR CYS HIS PRO ILE ALA LEU PRO LYS HIS SEQRES 31 A 966 GLN PRO THR PRO ASP PRO GLU GLY ASP ARG VAL ARG ALA SEQRES 32 A 966 GLU MET PRO ASN GLN LEU ARG LYS GLN LEU GLU ALA ILE SEQRES 33 A 966 ILE ALA THR ASP PRO LEU ASN PRO LEU THR ALA GLU ASP SEQRES 34 A 966 LYS GLU LEU LEU TRP HIS PHE ARG TYR GLU SER LEU LYS SEQRES 35 A 966 HIS PRO LYS ALA TYR PRO LYS LEU PHE SER SER VAL LYS SEQRES 36 A 966 TRP GLY GLN GLN GLU ILE VAL ALA LYS THR TYR GLN LEU SEQRES 37 A 966 LEU ALA ARG ARG GLU VAL TRP ASP GLN SER ALA LEU ASP SEQRES 38 A 966 VAL GLY LEU THR MET GLN LEU LEU ASP CYS ASN PHE SER SEQRES 39 A 966 ASP GLU ASN VAL ARG ALA ILE ALA VAL GLN LYS LEU GLU SEQRES 40 A 966 SER LEU GLU ASP ASP ASP VAL LEU HIS TYR LEU LEU GLN SEQRES 41 A 966 LEU VAL GLN ALA VAL LYS PHE GLU PRO TYR HIS ASP SER SEQRES 42 A 966 ALA LEU ALA ARG PHE LEU LEU LYS ARG GLY LEU ARG ASN SEQRES 43 A 966 LYS ARG ILE GLY HIS PHE LEU PHE TRP PHE LEU ARG SER SEQRES 44 A 966 GLU ILE ALA GLN SER ARG HIS TYR GLN GLN ARG PHE ALA SEQRES 45 A 966 VAL ILE LEU GLU ALA TYR LEU ARG GLY CYS GLY THR ALA SEQRES 46 A 966 MET LEU HIS ASP PHE THR GLN GLN VAL GLN VAL ILE GLU SEQRES 47 A 966 MET LEU GLN LYS VAL THR LEU ASP ILE LYS SER LEU SER SEQRES 48 A 966 ALA GLU LYS TYR ASP VAL SER SER GLN VAL ILE SER GLN SEQRES 49 A 966 LEU LYS GLN LYS LEU GLU ASN LEU GLN ASN SER GLN LEU SEQRES 50 A 966 PRO GLU SER PHE ARG VAL PRO TYR ASP PRO GLY LEU LYS SEQRES 51 A 966 ALA GLY ALA LEU ALA ILE GLU LYS CYS LYS VAL MET ALA SEQRES 52 A 966 SER LYS LYS LYS PRO LEU TRP LEU GLU PHE LYS CYS ALA SEQRES 53 A 966 ASP PRO THR ALA LEU SER ASN GLU THR ILE GLY ILE ILE SEQRES 54 A 966 PHE LYS HIS GLY ASP ASP LEU ARG GLN ASP MET LEU ILE SEQRES 55 A 966 LEU GLN ILE LEU ARG ILE MET GLU SER ILE TRP GLU THR SEQRES 56 A 966 GLU SER LEU ASP LEU CYS LEU LEU PRO TYR GLY CYS ILE SEQRES 57 A 966 SER THR GLY ASP LYS ILE GLY MET ILE GLU ILE VAL LYS SEQRES 58 A 966 ASP ALA THR THR ILE ALA LYS ILE GLN GLN SER THR VAL SEQRES 59 A 966 GLY ASN THR GLY ALA PHE LYS ASP GLU VAL LEU ASN HIS SEQRES 60 A 966 TRP LEU LYS GLU LYS SER PRO THR GLU GLU LYS PHE GLN SEQRES 61 A 966 ALA ALA VAL GLU ARG PHE VAL TYR SER CYS ALA GLY TYR SEQRES 62 A 966 CYS VAL ALA THR PHE VAL LEU GLY ILE GLY ASP ARG HIS SEQRES 63 A 966 ASN ASP ASN ILE MET ILE THR GLU THR GLY ASN LEU PHE SEQRES 64 A 966 HIS ILE ASP PHE GLY HIS ILE LEU GLY ASN TYR LYS SER SEQRES 65 A 966 PHE LEU GLY ILE ASN LYS GLU ARG VAL PRO PHE VAL LEU SEQRES 66 A 966 THR PRO ASP PHE LEU PHE VAL MET GLY THR SER GLY LYS SEQRES 67 A 966 LYS THR SER PRO HIS PHE GLN LYS PHE GLN ASP ILE CYS SEQRES 68 A 966 VAL LYS ALA TYR LEU ALA LEU ARG HIS HIS THR ASN LEU SEQRES 69 A 966 LEU ILE ILE LEU PHE SER MET MET LEU MET THR GLY MET SEQRES 70 A 966 PRO GLN LEU THR SER LYS GLU ASP ILE GLU TYR ILE ARG SEQRES 71 A 966 ASP ALA LEU THR VAL GLY LYS ASN GLU GLU ASP ALA LYS SEQRES 72 A 966 LYS TYR PHE LEU ASP GLN ILE GLU VAL CYS ARG ASP LYS SEQRES 73 A 966 GLY TRP THR VAL GLN PHE ASN TRP PHE LEU HIS LEU VAL SEQRES 74 A 966 LEU GLY ILE LYS GLN GLY GLU LYS HIS SER ALA HIS HIS SEQRES 75 A 966 HIS HIS HIS HIS HET JZX A 1 33 HETNAM JZX 5-(6-{[4-(METHYLSULFONYL)PIPERAZIN-1-YL]METHYL}-4- HETNAM 2 JZX MORPHOLIN-4-YLTHIENO[3,2-D]PYRIMIDIN-2-YL)PYRIDIN-2- HETNAM 3 JZX AMINE FORMUL 2 JZX C21 H27 N7 O3 S2 HELIX 1 1 SER A 147 GLY A 159 1 13 HELIX 2 2 ASP A 171 LEU A 180 1 10 HELIX 3 3 LEU A 180 ARG A 191 1 12 HELIX 4 4 ASP A 192 HIS A 199 1 8 HELIX 5 5 PRO A 208 LYS A 213 1 6 HELIX 6 6 THR A 240 SER A 247 1 8 HELIX 7 7 PRO A 286 ASN A 289 5 4 HELIX 8 8 PHE A 290 ASN A 299 1 10 HELIX 9 9 ASP A 312 GLU A 317 5 6 HELIX 10 10 ASN A 498 THR A 503 5 6 HELIX 11 11 LEU A 551 ALA A 560 1 10 HELIX 12 12 THR A 568 PHE A 578 1 11 HELIX 13 13 PHE A 578 LEU A 583 1 6 HELIX 14 14 LYS A 584 LYS A 587 5 4 HELIX 15 15 ALA A 588 SER A 594 1 7 HELIX 16 16 GLN A 600 ARG A 613 1 14 HELIX 17 17 ARG A 614 SER A 620 1 7 HELIX 18 18 ASP A 623 ASP A 632 1 10 HELIX 19 19 ASP A 637 GLU A 649 1 13 HELIX 20 20 GLU A 652 ALA A 666 1 15 HELIX 21 21 VAL A 667 GLU A 670 5 4 HELIX 22 22 SER A 675 LEU A 686 1 12 HELIX 23 23 ASN A 688 SER A 706 1 19 HELIX 24 24 TYR A 709 ARG A 722 1 14 HELIX 25 25 GLY A 725 SER A 753 1 29 HELIX 26 26 SER A 760 GLN A 778 1 19 HELIX 27 27 ASP A 837 GLU A 858 1 22 HELIX 28 28 ILE A 888 SER A 894 1 7 HELIX 29 29 GLU A 905 LYS A 914 1 10 HELIX 30 30 GLU A 918 GLY A 943 1 26 HELIX 31 31 HIS A 948 ASP A 950 5 3 HELIX 32 32 THR A 988 GLY A 996 1 9 HELIX 33 33 SER A 1003 HIS A 1022 1 20 HELIX 34 34 HIS A 1023 MET A 1039 1 17 HELIX 35 35 LYS A 1045 LEU A 1055 1 11 HELIX 36 36 ASN A 1060 GLY A 1079 1 20 HELIX 37 37 PHE A 1084 HIS A 1089 1 6 SHEET 1 A 5 THR A 229 VAL A 235 0 SHEET 2 A 5 ILE A 220 ARG A 226 -1 N ILE A 220 O VAL A 235 SHEET 3 A 5 ILE A 303 ASP A 308 1 O ILE A 303 N VAL A 223 SHEET 4 A 5 VAL A 271 VAL A 274 -1 N ARG A 273 O VAL A 306 SHEET 5 A 5 TYR A 280 LEU A 281 -1 O LEU A 281 N LEU A 272 SHEET 1 B 3 GLU A 407 VAL A 408 0 SHEET 2 B 3 LYS A 360 ASP A 369 -1 N ILE A 368 O VAL A 408 SHEET 3 B 3 VAL A 412 LYS A 419 -1 O VAL A 412 N ILE A 365 SHEET 1 C 4 GLU A 407 VAL A 408 0 SHEET 2 C 4 LYS A 360 ASP A 369 -1 N ILE A 368 O VAL A 408 SHEET 3 C 4 SER A 515 LEU A 520 -1 O LEU A 519 N LYS A 364 SHEET 4 C 4 GLY A 478 HIS A 483 -1 N GLY A 478 O LEU A 520 SHEET 1 D 3 VAL A 393 GLN A 396 0 SHEET 2 D 3 THR A 380 GLN A 388 -1 N ILE A 387 O LEU A 394 SHEET 3 D 3 LYS A 402 PRO A 403 -1 O LYS A 402 N VAL A 381 SHEET 1 E 5 VAL A 393 GLN A 396 0 SHEET 2 E 5 THR A 380 GLN A 388 -1 N ILE A 387 O LEU A 394 SHEET 3 E 5 LEU A 428 TYR A 434 -1 O GLN A 432 N GLU A 384 SHEET 4 E 5 TYR A 462 LEU A 467 -1 O LEU A 466 N LEU A 429 SHEET 5 E 5 TRP A 485 GLN A 486 -1 O TRP A 485 N TYR A 463 SHEET 1 F 4 PHE A 783 VAL A 785 0 SHEET 2 F 4 ASP A 788 LEU A 796 -1 O LEU A 791 N VAL A 785 SHEET 3 F 4 LEU A 811 CYS A 817 -1 O LYS A 816 N ALA A 795 SHEET 4 F 4 LYS A 802 VAL A 803 -1 N LYS A 802 O TRP A 812 SHEET 1 G 6 PHE A 783 VAL A 785 0 SHEET 2 G 6 ASP A 788 LEU A 796 -1 O LEU A 791 N VAL A 785 SHEET 3 G 6 LEU A 811 CYS A 817 -1 O LYS A 816 N ALA A 795 SHEET 4 G 6 ILE A 828 HIS A 834 -1 O ILE A 830 N LEU A 813 SHEET 5 G 6 ILE A 876 GLU A 880 -1 O GLY A 877 N LYS A 833 SHEET 6 G 6 CYS A 869 GLY A 873 -1 N ILE A 870 O MET A 878 SHEET 1 H 3 THR A 886 THR A 887 0 SHEET 2 H 3 ILE A 952 ILE A 954 -1 O ILE A 954 N THR A 886 SHEET 3 H 3 LEU A 960 HIS A 962 -1 O PHE A 961 N MET A 953 SITE 1 AC1 14 LYS A 802 MET A 804 ALA A 805 ASP A 836 SITE 2 AC1 14 LEU A 838 ASP A 841 ILE A 879 GLU A 880 SITE 3 AC1 14 ILE A 881 VAL A 882 THR A 887 MET A 953 SITE 4 AC1 14 ILE A 963 ASP A 964 CRYST1 142.635 67.391 106.674 90.00 96.11 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007011 0.000000 0.000750 0.00000 SCALE2 0.000000 0.014839 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009428 0.00000