HEADER CHAPERONE 11-DEC-09 3L1F TITLE BOVINE ALPHAA CRYSTALLIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-CRYSTALLIN A CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 62-163; COMPND 5 SYNONYM: ALPHA-CRYSTALLIN A CHAIN, SHORT FORM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: CRYA1, CRYAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS LENS TRANSPARENCY, POLYDISPERSITY, PROTEIN AGGREGATION, CRYSTALLIN, KEYWDS 2 EYE LENS PROTEIN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR A.LAGANOWSKY,M.R.SAWAYA,D.CASCIO,D.EISENBERG REVDAT 4 21-FEB-24 3L1F 1 REMARK SEQADV REVDAT 3 01-NOV-17 3L1F 1 REMARK REVDAT 2 14-JUL-10 3L1F 1 JRNL REVDAT 1 12-MAY-10 3L1F 0 JRNL AUTH A.LAGANOWSKY,J.L.BENESCH,M.LANDAU,L.DING,M.R.SAWAYA, JRNL AUTH 2 D.CASCIO,Q.HUANG,C.V.ROBINSON,J.HORWITZ,D.EISENBERG JRNL TITL CRYSTAL STRUCTURES OF TRUNCATED ALPHAA AND ALPHAB JRNL TITL 2 CRYSTALLINS REVEAL STRUCTURAL MECHANISMS OF POLYDISPERSITY JRNL TITL 3 IMPORTANT FOR EYE LENS FUNCTION. JRNL REF PROTEIN SCI. V. 19 1031 2010 JRNL REFN ISSN 0961-8368 JRNL PMID 20440841 JRNL DOI 10.1002/PRO.380 REMARK 2 REMARK 2 RESOLUTION. 1.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 16118 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190 REMARK 3 FREE R VALUE TEST SET COUNT : 837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.4680 - 2.7780 0.87 2514 135 0.2110 0.2110 REMARK 3 2 2.7780 - 2.2050 0.94 2589 127 0.1780 0.1950 REMARK 3 3 2.2050 - 1.9270 0.96 2596 145 0.1430 0.1960 REMARK 3 4 1.9270 - 1.7500 0.96 2590 130 0.1420 0.1820 REMARK 3 5 1.7500 - 1.6250 0.95 2550 154 0.1500 0.2030 REMARK 3 6 1.6250 - 1.5300 0.92 2442 146 0.1600 0.2350 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 60.83 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.10400 REMARK 3 B22 (A**2) : -2.10400 REMARK 3 B33 (A**2) : 4.20800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 827 REMARK 3 ANGLE : 1.050 1117 REMARK 3 CHIRALITY : 0.083 119 REMARK 3 PLANARITY : 0.004 148 REMARK 3 DIHEDRAL : 14.690 320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056711. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16465 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.530 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.53 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HEPES PH 7.5, 10% PEG 6000, 5% REMARK 280 MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.63050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.02950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.02950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.31525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.02950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.02950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.94575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.02950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.02950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.31525 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.02950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.02950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.94575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 34.63050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 34.63050 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 61 REMARK 465 ASP A 151 REMARK 465 ALA A 152 REMARK 465 GLY A 153 REMARK 465 HIS A 154 REMARK 465 SER A 155 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 1 DBREF 3L1F A 62 163 UNP P02470 CRYAA_BOVIN 62 163 SEQADV 3L1F GLY A 61 UNP P02470 EXPRESSION TAG SEQRES 1 A 103 GLY SER GLU VAL ARG SER ASP ARG ASP LYS PHE VAL ILE SEQRES 2 A 103 PHE LEU ASP VAL LYS HIS PHE SER PRO GLU ASP LEU THR SEQRES 3 A 103 VAL LYS VAL GLN GLU ASP PHE VAL GLU ILE HIS GLY LYS SEQRES 4 A 103 HIS ASN GLU ARG GLN ASP ASP HIS GLY TYR ILE SER ARG SEQRES 5 A 103 GLU PHE HIS ARG ARG TYR ARG LEU PRO SER ASN VAL ASP SEQRES 6 A 103 GLN SER ALA LEU SER CYS SER LEU SER ALA ASP GLY MET SEQRES 7 A 103 LEU THR PHE SER GLY PRO LYS ILE PRO SER GLY VAL ASP SEQRES 8 A 103 ALA GLY HIS SER GLU ARG ALA ILE PRO VAL SER ARG HET MPD A 1 8 HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 MPD C6 H14 O2 FORMUL 3 HOH *43(H2 O) HELIX 1 1 SER A 81 GLU A 83 5 3 HELIX 2 2 ASP A 105 HIS A 107 5 3 SHEET 1 A 4 GLU A 63 SER A 66 0 SHEET 2 A 4 LYS A 70 ASP A 76 -1 O PHE A 74 N GLU A 63 SHEET 3 A 4 MET A 138 PRO A 144 -1 O LEU A 139 N LEU A 75 SHEET 4 A 4 SER A 130 LEU A 133 -1 N SER A 132 O THR A 140 SHEET 1 B 3 LEU A 85 GLN A 90 0 SHEET 2 B 3 PHE A 93 ARG A 103 -1 O GLU A 95 N LYS A 88 SHEET 3 B 3 TYR A 109 ARG A 119 -1 O TYR A 118 N VAL A 94 SITE 1 AC1 4 LEU A 75 ASP A 76 ILE A 110 ARG A 112 CRYST1 56.059 56.059 69.261 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017838 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014438 0.00000