data_3L1Y # _entry.id 3L1Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.378 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L1Y pdb_00003l1y 10.2210/pdb3l1y/pdb RCSB RCSB056730 ? ? WWPDB D_1000056730 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3L1X 'Crystal Structure of U-box Domain of Human E4B Ubiquitin Ligase' unspecified PDB 3L1Z 'Crystal structure of the U-BOX domain of human E4B ubiquitin ligase in complex with UBCH5C E2 ubiquitin conjugating enzyme' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3L1Y _pdbx_database_status.recvd_initial_deposition_date 2009-12-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Benirschke, R.' 1 'Thompson, J.R.' 2 'Mer, G.' 3 # _citation.id primary _citation.title 'Molecular Basis for the Association of Human E4B U Box Ubiquitin Ligase with E2-Conjugating Enzymes UbcH5c and Ubc4.' _citation.journal_abbrev Structure _citation.journal_volume 18 _citation.page_first 955 _citation.page_last 965 _citation.year 2010 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20696396 _citation.pdbx_database_id_DOI 10.1016/j.str.2010.04.017 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Benirschke, R.C.' 1 ? primary 'Thompson, J.R.' 2 ? primary 'Nomine, Y.' 3 ? primary 'Wasielewski, E.' 4 ? primary 'Juranic, N.' 5 ? primary 'Macura, S.' 6 ? primary 'Hatakeyama, S.' 7 ? primary 'Nakayama, K.I.' 8 ? primary 'Botuyan, M.V.' 9 ? primary 'Mer, G.' 10 ? # _cell.entry_id 3L1Y _cell.length_a 28.230 _cell.length_b 59.120 _cell.length_c 45.240 _cell.angle_alpha 90.00 _cell.angle_beta 106.73 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3L1Y _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ubiquitin-conjugating enzyme E2 D2' 18046.639 1 6.3.2.19 ? 'residues 1-147' ? 2 water nat water 18.015 176 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Ubiquitin-protein ligase D2, Ubiquitin carrier protein D2, Ubiquitin-conjugating enzyme E2-17 kDa 2, E2(17)KB 2' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MHHHHHHMNSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT TRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKYAM ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHMNSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFT TRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYQTDREKYNRIAREWTQKYAM ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 MET n 1 9 ASN n 1 10 SER n 1 11 MET n 1 12 ALA n 1 13 LEU n 1 14 LYS n 1 15 ARG n 1 16 ILE n 1 17 HIS n 1 18 LYS n 1 19 GLU n 1 20 LEU n 1 21 ASN n 1 22 ASP n 1 23 LEU n 1 24 ALA n 1 25 ARG n 1 26 ASP n 1 27 PRO n 1 28 PRO n 1 29 ALA n 1 30 GLN n 1 31 CYS n 1 32 SER n 1 33 ALA n 1 34 GLY n 1 35 PRO n 1 36 VAL n 1 37 GLY n 1 38 ASP n 1 39 ASP n 1 40 MET n 1 41 PHE n 1 42 HIS n 1 43 TRP n 1 44 GLN n 1 45 ALA n 1 46 THR n 1 47 ILE n 1 48 MET n 1 49 GLY n 1 50 PRO n 1 51 ASN n 1 52 ASP n 1 53 SER n 1 54 PRO n 1 55 TYR n 1 56 GLN n 1 57 GLY n 1 58 GLY n 1 59 VAL n 1 60 PHE n 1 61 PHE n 1 62 LEU n 1 63 THR n 1 64 ILE n 1 65 HIS n 1 66 PHE n 1 67 PRO n 1 68 THR n 1 69 ASP n 1 70 TYR n 1 71 PRO n 1 72 PHE n 1 73 LYS n 1 74 PRO n 1 75 PRO n 1 76 LYS n 1 77 VAL n 1 78 ALA n 1 79 PHE n 1 80 THR n 1 81 THR n 1 82 ARG n 1 83 ILE n 1 84 TYR n 1 85 HIS n 1 86 PRO n 1 87 ASN n 1 88 ILE n 1 89 ASN n 1 90 SER n 1 91 ASN n 1 92 GLY n 1 93 SER n 1 94 ILE n 1 95 CYS n 1 96 LEU n 1 97 ASP n 1 98 ILE n 1 99 LEU n 1 100 ARG n 1 101 SER n 1 102 GLN n 1 103 TRP n 1 104 SER n 1 105 PRO n 1 106 ALA n 1 107 LEU n 1 108 THR n 1 109 ILE n 1 110 SER n 1 111 LYS n 1 112 VAL n 1 113 LEU n 1 114 LEU n 1 115 SER n 1 116 ILE n 1 117 CYS n 1 118 SER n 1 119 LEU n 1 120 LEU n 1 121 CYS n 1 122 ASP n 1 123 PRO n 1 124 ASN n 1 125 PRO n 1 126 ASP n 1 127 ASP n 1 128 PRO n 1 129 LEU n 1 130 VAL n 1 131 PRO n 1 132 GLU n 1 133 ILE n 1 134 ALA n 1 135 ARG n 1 136 ILE n 1 137 TYR n 1 138 GLN n 1 139 THR n 1 140 ASP n 1 141 ARG n 1 142 GLU n 1 143 LYS n 1 144 TYR n 1 145 ASN n 1 146 ARG n 1 147 ILE n 1 148 ALA n 1 149 ARG n 1 150 GLU n 1 151 TRP n 1 152 THR n 1 153 GLN n 1 154 LYS n 1 155 TYR n 1 156 ALA n 1 157 MET n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'UBE2D2, UBC4, UBCH5B' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pT7.7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code UB2D2_HUMAN _struct_ref.pdbx_db_accession P62837 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS NGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L1Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 157 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P62837 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 147 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3L1Y MET A 1 ? UNP P62837 ? ? 'expression tag' -9 1 1 3L1Y HIS A 2 ? UNP P62837 ? ? 'expression tag' -8 2 1 3L1Y HIS A 3 ? UNP P62837 ? ? 'expression tag' -7 3 1 3L1Y HIS A 4 ? UNP P62837 ? ? 'expression tag' -6 4 1 3L1Y HIS A 5 ? UNP P62837 ? ? 'expression tag' -5 5 1 3L1Y HIS A 6 ? UNP P62837 ? ? 'expression tag' -4 6 1 3L1Y HIS A 7 ? UNP P62837 ? ? 'expression tag' -3 7 1 3L1Y MET A 8 ? UNP P62837 ? ? 'expression tag' -2 8 1 3L1Y ASN A 9 ? UNP P62837 ? ? 'expression tag' -1 9 1 3L1Y SER A 10 ? UNP P62837 ? ? 'expression tag' 0 10 1 3L1Y GLN A 138 ? UNP P62837 LYS 128 'SEE REMARK 999' 128 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3L1Y _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_percent_sol 38.60 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '2M sodium formate, 0.1M sodium acetate trihydrate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2006-03-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type OTHER _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54 # _reflns.entry_id 3L1Y _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 43.31 _reflns.d_resolution_high 1.60 _reflns.number_obs 17905 _reflns.number_all ? _reflns.percent_possible_obs 99.92 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 17.14 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.60 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.123 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 13.15 _reflns_shell.pdbx_redundancy 3.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3L1Y _refine.ls_number_reflns_obs 17905 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 43.31 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 99.93 _refine.ls_R_factor_obs 0.18918 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.18700 _refine.ls_R_factor_R_free 0.22900 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 958 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.961 _refine.correlation_coeff_Fo_to_Fc_free 0.943 _refine.B_iso_mean 6.751 _refine.aniso_B[1][1] -0.05 _refine.aniso_B[2][2] 0.03 _refine.aniso_B[3][3] 0.13 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.21 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 1X23' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.105 _refine.pdbx_overall_ESU_R_Free 0.106 _refine.overall_SU_ML 0.068 _refine.overall_SU_B 4.236 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1220 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 176 _refine_hist.number_atoms_total 1396 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 43.31 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.023 0.022 ? 1320 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.018 1.956 ? 1813 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.263 5.000 ? 169 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 32.328 23.594 ? 64 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 12.409 15.000 ? 217 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 18.879 15.000 ? 10 'X-RAY DIFFRACTION' ? r_chiral_restr 0.135 0.200 ? 192 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.012 0.022 ? 1050 'X-RAY DIFFRACTION' ? r_mcbond_it 0.970 1.500 ? 802 'X-RAY DIFFRACTION' ? r_mcangle_it 1.728 2.000 ? 1321 'X-RAY DIFFRACTION' ? r_scbond_it 3.287 3.000 ? 518 'X-RAY DIFFRACTION' ? r_scangle_it 4.907 4.500 ? 485 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.600 _refine_ls_shell.d_res_low 1.642 _refine_ls_shell.number_reflns_R_work 1346 _refine_ls_shell.R_factor_R_work 0.413 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.R_factor_R_free 0.457 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 61 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3L1Y _struct.title 'Crystal structure of human UBC4 E2 conjugating enzyme' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L1Y _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'E2 CONJUGATING ENZYME, UBIQUITIN LIGASE, Ubl conjugation pathway, LIGASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 10 ? ASP A 26 ? SER A 0 ASP A 16 1 ? 17 HELX_P HELX_P2 2 LEU A 96 ? ARG A 100 ? LEU A 86 ARG A 90 5 ? 5 HELX_P HELX_P3 3 THR A 108 ? ASP A 122 ? THR A 98 ASP A 112 1 ? 15 HELX_P HELX_P4 4 VAL A 130 ? ASP A 140 ? VAL A 120 ASP A 130 1 ? 11 HELX_P HELX_P5 5 ASP A 140 ? ALA A 156 ? ASP A 130 ALA A 146 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id TYR _struct_mon_prot_cis.label_seq_id 70 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id TYR _struct_mon_prot_cis.auth_seq_id 60 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 71 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 61 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 11.59 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 31 ? PRO A 35 ? CYS A 21 PRO A 25 A 2 HIS A 42 ? MET A 48 ? HIS A 32 MET A 38 A 3 VAL A 59 ? HIS A 65 ? VAL A 49 HIS A 55 A 4 LYS A 76 ? PHE A 79 ? LYS A 66 PHE A 69 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 32 ? N SER A 22 O THR A 46 ? O THR A 36 A 2 3 N TRP A 43 ? N TRP A 33 O ILE A 64 ? O ILE A 54 A 3 4 N HIS A 65 ? N HIS A 55 O LYS A 76 ? O LYS A 66 # _database_PDB_matrix.entry_id 3L1Y _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3L1Y _atom_sites.fract_transf_matrix[1][1] 0.035423 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.010648 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016915 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023081 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -9 ? ? ? A . n A 1 2 HIS 2 -8 ? ? ? A . n A 1 3 HIS 3 -7 ? ? ? A . n A 1 4 HIS 4 -6 ? ? ? A . n A 1 5 HIS 5 -5 ? ? ? A . n A 1 6 HIS 6 -4 -4 HIS HIS A . n A 1 7 HIS 7 -3 -3 HIS HIS A . n A 1 8 MET 8 -2 -2 MET MET A . n A 1 9 ASN 9 -1 -1 ASN ASN A . n A 1 10 SER 10 0 0 SER SER A . n A 1 11 MET 11 1 1 MET MET A . n A 1 12 ALA 12 2 2 ALA ALA A . n A 1 13 LEU 13 3 3 LEU LEU A . n A 1 14 LYS 14 4 4 LYS LYS A . n A 1 15 ARG 15 5 5 ARG ARG A . n A 1 16 ILE 16 6 6 ILE ILE A . n A 1 17 HIS 17 7 7 HIS HIS A . n A 1 18 LYS 18 8 8 LYS LYS A . n A 1 19 GLU 19 9 9 GLU GLU A . n A 1 20 LEU 20 10 10 LEU LEU A . n A 1 21 ASN 21 11 11 ASN ASN A . n A 1 22 ASP 22 12 12 ASP ASP A . n A 1 23 LEU 23 13 13 LEU LEU A . n A 1 24 ALA 24 14 14 ALA ALA A . n A 1 25 ARG 25 15 15 ARG ARG A . n A 1 26 ASP 26 16 16 ASP ASP A . n A 1 27 PRO 27 17 17 PRO PRO A . n A 1 28 PRO 28 18 18 PRO PRO A . n A 1 29 ALA 29 19 19 ALA ALA A . n A 1 30 GLN 30 20 20 GLN GLN A . n A 1 31 CYS 31 21 21 CYS CYS A . n A 1 32 SER 32 22 22 SER SER A . n A 1 33 ALA 33 23 23 ALA ALA A . n A 1 34 GLY 34 24 24 GLY GLY A . n A 1 35 PRO 35 25 25 PRO PRO A . n A 1 36 VAL 36 26 26 VAL VAL A . n A 1 37 GLY 37 27 27 GLY GLY A . n A 1 38 ASP 38 28 28 ASP ASP A . n A 1 39 ASP 39 29 29 ASP ASP A . n A 1 40 MET 40 30 30 MET MET A . n A 1 41 PHE 41 31 31 PHE PHE A . n A 1 42 HIS 42 32 32 HIS HIS A . n A 1 43 TRP 43 33 33 TRP TRP A . n A 1 44 GLN 44 34 34 GLN GLN A . n A 1 45 ALA 45 35 35 ALA ALA A . n A 1 46 THR 46 36 36 THR THR A . n A 1 47 ILE 47 37 37 ILE ILE A . n A 1 48 MET 48 38 38 MET MET A . n A 1 49 GLY 49 39 39 GLY GLY A . n A 1 50 PRO 50 40 40 PRO PRO A . n A 1 51 ASN 51 41 41 ASN ASN A . n A 1 52 ASP 52 42 42 ASP ASP A . n A 1 53 SER 53 43 43 SER SER A . n A 1 54 PRO 54 44 44 PRO PRO A . n A 1 55 TYR 55 45 45 TYR TYR A . n A 1 56 GLN 56 46 46 GLN GLN A . n A 1 57 GLY 57 47 47 GLY GLY A . n A 1 58 GLY 58 48 48 GLY GLY A . n A 1 59 VAL 59 49 49 VAL VAL A . n A 1 60 PHE 60 50 50 PHE PHE A . n A 1 61 PHE 61 51 51 PHE PHE A . n A 1 62 LEU 62 52 52 LEU LEU A . n A 1 63 THR 63 53 53 THR THR A . n A 1 64 ILE 64 54 54 ILE ILE A . n A 1 65 HIS 65 55 55 HIS HIS A . n A 1 66 PHE 66 56 56 PHE PHE A . n A 1 67 PRO 67 57 57 PRO PRO A . n A 1 68 THR 68 58 58 THR THR A . n A 1 69 ASP 69 59 59 ASP ASP A . n A 1 70 TYR 70 60 60 TYR TYR A . n A 1 71 PRO 71 61 61 PRO PRO A . n A 1 72 PHE 72 62 62 PHE PHE A . n A 1 73 LYS 73 63 63 LYS LYS A . n A 1 74 PRO 74 64 64 PRO PRO A . n A 1 75 PRO 75 65 65 PRO PRO A . n A 1 76 LYS 76 66 66 LYS LYS A . n A 1 77 VAL 77 67 67 VAL VAL A . n A 1 78 ALA 78 68 68 ALA ALA A . n A 1 79 PHE 79 69 69 PHE PHE A . n A 1 80 THR 80 70 70 THR THR A . n A 1 81 THR 81 71 71 THR THR A . n A 1 82 ARG 82 72 72 ARG ARG A . n A 1 83 ILE 83 73 73 ILE ILE A . n A 1 84 TYR 84 74 74 TYR TYR A . n A 1 85 HIS 85 75 75 HIS HIS A . n A 1 86 PRO 86 76 76 PRO PRO A . n A 1 87 ASN 87 77 77 ASN ASN A . n A 1 88 ILE 88 78 78 ILE ILE A . n A 1 89 ASN 89 79 79 ASN ASN A . n A 1 90 SER 90 80 80 SER SER A . n A 1 91 ASN 91 81 81 ASN ASN A . n A 1 92 GLY 92 82 82 GLY GLY A . n A 1 93 SER 93 83 83 SER SER A . n A 1 94 ILE 94 84 84 ILE ILE A . n A 1 95 CYS 95 85 85 CYS CYS A . n A 1 96 LEU 96 86 86 LEU LEU A . n A 1 97 ASP 97 87 87 ASP ASP A . n A 1 98 ILE 98 88 88 ILE ILE A . n A 1 99 LEU 99 89 89 LEU LEU A . n A 1 100 ARG 100 90 90 ARG ARG A . n A 1 101 SER 101 91 91 SER SER A . n A 1 102 GLN 102 92 92 GLN GLN A . n A 1 103 TRP 103 93 93 TRP TRP A . n A 1 104 SER 104 94 94 SER SER A . n A 1 105 PRO 105 95 95 PRO PRO A . n A 1 106 ALA 106 96 96 ALA ALA A . n A 1 107 LEU 107 97 97 LEU LEU A . n A 1 108 THR 108 98 98 THR THR A . n A 1 109 ILE 109 99 99 ILE ILE A . n A 1 110 SER 110 100 100 SER SER A . n A 1 111 LYS 111 101 101 LYS LYS A . n A 1 112 VAL 112 102 102 VAL VAL A . n A 1 113 LEU 113 103 103 LEU LEU A . n A 1 114 LEU 114 104 104 LEU LEU A . n A 1 115 SER 115 105 105 SER SER A . n A 1 116 ILE 116 106 106 ILE ILE A . n A 1 117 CYS 117 107 107 CYS CYS A . n A 1 118 SER 118 108 108 SER SER A . n A 1 119 LEU 119 109 109 LEU LEU A . n A 1 120 LEU 120 110 110 LEU LEU A . n A 1 121 CYS 121 111 111 CYS CYS A . n A 1 122 ASP 122 112 112 ASP ASP A . n A 1 123 PRO 123 113 113 PRO PRO A . n A 1 124 ASN 124 114 114 ASN ASN A . n A 1 125 PRO 125 115 115 PRO PRO A . n A 1 126 ASP 126 116 116 ASP ASP A . n A 1 127 ASP 127 117 117 ASP ASP A . n A 1 128 PRO 128 118 118 PRO PRO A . n A 1 129 LEU 129 119 119 LEU LEU A . n A 1 130 VAL 130 120 120 VAL VAL A . n A 1 131 PRO 131 121 121 PRO PRO A . n A 1 132 GLU 132 122 122 GLU GLU A . n A 1 133 ILE 133 123 123 ILE ILE A . n A 1 134 ALA 134 124 124 ALA ALA A . n A 1 135 ARG 135 125 125 ARG ARG A . n A 1 136 ILE 136 126 126 ILE ILE A . n A 1 137 TYR 137 127 127 TYR TYR A . n A 1 138 GLN 138 128 128 GLN GLN A . n A 1 139 THR 139 129 129 THR THR A . n A 1 140 ASP 140 130 130 ASP ASP A . n A 1 141 ARG 141 131 131 ARG ARG A . n A 1 142 GLU 142 132 132 GLU GLU A . n A 1 143 LYS 143 133 133 LYS LYS A . n A 1 144 TYR 144 134 134 TYR TYR A . n A 1 145 ASN 145 135 135 ASN ASN A . n A 1 146 ARG 146 136 136 ARG ARG A . n A 1 147 ILE 147 137 137 ILE ILE A . n A 1 148 ALA 148 138 138 ALA ALA A . n A 1 149 ARG 149 139 139 ARG ARG A . n A 1 150 GLU 150 140 140 GLU GLU A . n A 1 151 TRP 151 141 141 TRP TRP A . n A 1 152 THR 152 142 142 THR THR A . n A 1 153 GLN 153 143 143 GLN GLN A . n A 1 154 LYS 154 144 144 LYS LYS A . n A 1 155 TYR 155 145 145 TYR TYR A . n A 1 156 ALA 156 146 146 ALA ALA A . n A 1 157 MET 157 147 147 MET MET A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 148 148 HOH HOH A . B 2 HOH 2 149 149 HOH HOH A . B 2 HOH 3 150 150 HOH HOH A . B 2 HOH 4 151 151 HOH HOH A . B 2 HOH 5 152 152 HOH HOH A . B 2 HOH 6 153 1 HOH HOH A . B 2 HOH 7 154 154 HOH HOH A . B 2 HOH 8 155 155 HOH HOH A . B 2 HOH 9 156 156 HOH HOH A . B 2 HOH 10 157 2 HOH HOH A . B 2 HOH 11 158 3 HOH HOH A . B 2 HOH 12 159 159 HOH HOH A . B 2 HOH 13 160 4 HOH HOH A . B 2 HOH 14 161 5 HOH HOH A . B 2 HOH 15 162 162 HOH HOH A . B 2 HOH 16 163 163 HOH HOH A . B 2 HOH 17 164 164 HOH HOH A . B 2 HOH 18 165 165 HOH HOH A . B 2 HOH 19 166 166 HOH HOH A . B 2 HOH 20 167 167 HOH HOH A . B 2 HOH 21 168 168 HOH HOH A . B 2 HOH 22 169 169 HOH HOH A . B 2 HOH 23 170 170 HOH HOH A . B 2 HOH 24 171 171 HOH HOH A . B 2 HOH 25 172 172 HOH HOH A . B 2 HOH 26 173 173 HOH HOH A . B 2 HOH 27 174 6 HOH HOH A . B 2 HOH 28 175 7 HOH HOH A . B 2 HOH 29 176 176 HOH HOH A . B 2 HOH 30 177 8 HOH HOH A . B 2 HOH 31 178 178 HOH HOH A . B 2 HOH 32 179 179 HOH HOH A . B 2 HOH 33 180 180 HOH HOH A . B 2 HOH 34 181 181 HOH HOH A . B 2 HOH 35 182 182 HOH HOH A . B 2 HOH 36 183 9 HOH HOH A . B 2 HOH 37 184 10 HOH HOH A . B 2 HOH 38 185 11 HOH HOH A . B 2 HOH 39 186 186 HOH HOH A . B 2 HOH 40 187 12 HOH HOH A . B 2 HOH 41 188 13 HOH HOH A . B 2 HOH 42 189 14 HOH HOH A . B 2 HOH 43 190 15 HOH HOH A . B 2 HOH 44 191 191 HOH HOH A . B 2 HOH 45 192 16 HOH HOH A . B 2 HOH 46 193 193 HOH HOH A . B 2 HOH 47 194 194 HOH HOH A . B 2 HOH 48 195 195 HOH HOH A . B 2 HOH 49 196 196 HOH HOH A . B 2 HOH 50 197 197 HOH HOH A . B 2 HOH 51 198 198 HOH HOH A . B 2 HOH 52 199 199 HOH HOH A . B 2 HOH 53 200 17 HOH HOH A . B 2 HOH 54 201 201 HOH HOH A . B 2 HOH 55 202 202 HOH HOH A . B 2 HOH 56 203 203 HOH HOH A . B 2 HOH 57 204 18 HOH HOH A . B 2 HOH 58 205 19 HOH HOH A . B 2 HOH 59 206 20 HOH HOH A . B 2 HOH 60 207 21 HOH HOH A . B 2 HOH 61 208 22 HOH HOH A . B 2 HOH 62 209 23 HOH HOH A . B 2 HOH 63 210 24 HOH HOH A . B 2 HOH 64 211 25 HOH HOH A . B 2 HOH 65 212 27 HOH HOH A . B 2 HOH 66 213 28 HOH HOH A . B 2 HOH 67 214 29 HOH HOH A . B 2 HOH 68 215 30 HOH HOH A . B 2 HOH 69 216 31 HOH HOH A . B 2 HOH 70 217 32 HOH HOH A . B 2 HOH 71 218 33 HOH HOH A . B 2 HOH 72 219 34 HOH HOH A . B 2 HOH 73 220 35 HOH HOH A . B 2 HOH 74 221 36 HOH HOH A . B 2 HOH 75 222 37 HOH HOH A . B 2 HOH 76 223 38 HOH HOH A . B 2 HOH 77 224 39 HOH HOH A . B 2 HOH 78 225 40 HOH HOH A . B 2 HOH 79 226 41 HOH HOH A . B 2 HOH 80 227 42 HOH HOH A . B 2 HOH 81 228 43 HOH HOH A . B 2 HOH 82 229 44 HOH HOH A . B 2 HOH 83 230 45 HOH HOH A . B 2 HOH 84 231 46 HOH HOH A . B 2 HOH 85 232 47 HOH HOH A . B 2 HOH 86 233 48 HOH HOH A . B 2 HOH 87 234 49 HOH HOH A . B 2 HOH 88 235 50 HOH HOH A . B 2 HOH 89 236 51 HOH HOH A . B 2 HOH 90 237 52 HOH HOH A . B 2 HOH 91 238 53 HOH HOH A . B 2 HOH 92 239 54 HOH HOH A . B 2 HOH 93 240 55 HOH HOH A . B 2 HOH 94 241 56 HOH HOH A . B 2 HOH 95 242 57 HOH HOH A . B 2 HOH 96 243 58 HOH HOH A . B 2 HOH 97 244 59 HOH HOH A . B 2 HOH 98 245 60 HOH HOH A . B 2 HOH 99 246 61 HOH HOH A . B 2 HOH 100 247 62 HOH HOH A . B 2 HOH 101 248 63 HOH HOH A . B 2 HOH 102 249 64 HOH HOH A . B 2 HOH 103 250 65 HOH HOH A . B 2 HOH 104 251 67 HOH HOH A . B 2 HOH 105 252 68 HOH HOH A . B 2 HOH 106 253 69 HOH HOH A . B 2 HOH 107 254 70 HOH HOH A . B 2 HOH 108 255 71 HOH HOH A . B 2 HOH 109 256 72 HOH HOH A . B 2 HOH 110 257 73 HOH HOH A . B 2 HOH 111 258 74 HOH HOH A . B 2 HOH 112 259 75 HOH HOH A . B 2 HOH 113 260 76 HOH HOH A . B 2 HOH 114 261 77 HOH HOH A . B 2 HOH 115 262 78 HOH HOH A . B 2 HOH 116 263 79 HOH HOH A . B 2 HOH 117 264 80 HOH HOH A . B 2 HOH 118 265 81 HOH HOH A . B 2 HOH 119 266 82 HOH HOH A . B 2 HOH 120 267 83 HOH HOH A . B 2 HOH 121 268 84 HOH HOH A . B 2 HOH 122 269 85 HOH HOH A . B 2 HOH 123 270 86 HOH HOH A . B 2 HOH 124 271 88 HOH HOH A . B 2 HOH 125 272 89 HOH HOH A . B 2 HOH 126 273 90 HOH HOH A . B 2 HOH 127 274 91 HOH HOH A . B 2 HOH 128 275 92 HOH HOH A . B 2 HOH 129 276 93 HOH HOH A . B 2 HOH 130 277 94 HOH HOH A . B 2 HOH 131 278 95 HOH HOH A . B 2 HOH 132 279 96 HOH HOH A . B 2 HOH 133 280 97 HOH HOH A . B 2 HOH 134 281 98 HOH HOH A . B 2 HOH 135 282 99 HOH HOH A . B 2 HOH 136 283 100 HOH HOH A . B 2 HOH 137 284 101 HOH HOH A . B 2 HOH 138 285 103 HOH HOH A . B 2 HOH 139 286 105 HOH HOH A . B 2 HOH 140 287 106 HOH HOH A . B 2 HOH 141 288 107 HOH HOH A . B 2 HOH 142 289 108 HOH HOH A . B 2 HOH 143 290 110 HOH HOH A . B 2 HOH 144 291 111 HOH HOH A . B 2 HOH 145 292 112 HOH HOH A . B 2 HOH 146 293 113 HOH HOH A . B 2 HOH 147 294 114 HOH HOH A . B 2 HOH 148 295 116 HOH HOH A . B 2 HOH 149 296 117 HOH HOH A . B 2 HOH 150 297 118 HOH HOH A . B 2 HOH 151 298 119 HOH HOH A . B 2 HOH 152 299 120 HOH HOH A . B 2 HOH 153 300 121 HOH HOH A . B 2 HOH 154 301 122 HOH HOH A . B 2 HOH 155 302 123 HOH HOH A . B 2 HOH 156 303 124 HOH HOH A . B 2 HOH 157 304 125 HOH HOH A . B 2 HOH 158 305 126 HOH HOH A . B 2 HOH 159 306 127 HOH HOH A . B 2 HOH 160 307 128 HOH HOH A . B 2 HOH 161 308 129 HOH HOH A . B 2 HOH 162 309 130 HOH HOH A . B 2 HOH 163 310 131 HOH HOH A . B 2 HOH 164 311 133 HOH HOH A . B 2 HOH 165 312 134 HOH HOH A . B 2 HOH 166 313 136 HOH HOH A . B 2 HOH 167 314 137 HOH HOH A . B 2 HOH 168 315 138 HOH HOH A . B 2 HOH 169 316 140 HOH HOH A . B 2 HOH 170 317 141 HOH HOH A . B 2 HOH 171 318 142 HOH HOH A . B 2 HOH 172 319 143 HOH HOH A . B 2 HOH 173 320 144 HOH HOH A . B 2 HOH 174 321 145 HOH HOH A . B 2 HOH 175 322 146 HOH HOH A . B 2 HOH 176 323 147 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-05 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-09-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined 0.8050 3.9460 35.4670 0.1262 0.2698 0.0616 -0.0042 0.0055 0.0343 0.5594 4.3879 16.0278 -1.5142 0.6397 0.3564 -0.0775 0.0802 -0.0321 0.2467 -0.1384 0.1119 0.3516 0.8198 0.2159 'X-RAY DIFFRACTION' 2 ? refined -1.8050 -3.4230 18.4300 0.1868 0.1331 0.0616 0.0102 -0.0086 0.0206 0.8032 3.5877 5.6672 -0.4773 -0.9276 3.1381 -0.1050 -0.1390 -0.1850 0.1211 0.0017 0.0361 0.2551 0.0413 0.1033 'X-RAY DIFFRACTION' 3 ? refined 1.6270 8.7570 8.1630 0.1861 0.1142 0.0409 -0.0105 -0.0214 -0.0051 0.1733 0.7938 2.4903 0.1758 -0.4176 -1.0589 0.0239 -0.0239 0.0341 -0.0979 0.0510 0.0412 0.0379 -0.0078 -0.0748 'X-RAY DIFFRACTION' 4 ? refined -8.1570 8.7790 9.6410 0.1760 0.1511 0.0903 -0.0025 -0.0276 0.0322 1.1766 1.3790 4.2122 0.6613 -0.6527 -1.2629 -0.0290 0.1478 0.1400 -0.0953 0.1959 0.2218 -0.0627 -0.3079 -0.1670 'X-RAY DIFFRACTION' 5 ? refined -2.5380 16.1620 -9.1630 0.1979 0.1006 0.0237 -0.0278 -0.0204 0.0078 1.9869 2.9662 2.5686 -1.4800 0.8962 -0.7565 0.0069 0.0196 -0.0251 -0.1111 -0.0106 0.1169 0.0004 -0.1505 0.0037 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 6 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 A 7 A 21 ? . . . . ? 'X-RAY DIFFRACTION' 3 3 A 22 A 92 ? . . . . ? 'X-RAY DIFFRACTION' 4 4 A 93 A 117 ? . . . . ? 'X-RAY DIFFRACTION' 5 5 A 118 A 151 ? . . . . ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0063 ? 3 CrystalClear 'data reduction' . ? 4 CrystalClear 'data scaling' . ? 5 # _pdbx_entry_details.entry_id 3L1Y _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE RESIDUE AT POSITION 128 IS A NATURAL VARIANT AS IN AAC41750' _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OD2 A ASP 29 ? B O A HOH 224 ? ? 1.97 2 1 O A HOH 174 ? ? O A HOH 267 ? ? 2.06 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 OD1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 ASN _pdbx_validate_symm_contact.auth_seq_id_1 -1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 290 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_656 _pdbx_validate_symm_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 5 ? ? CZ A ARG 5 ? ? NH2 A ARG 5 ? ? 116.88 120.30 -3.42 0.50 N 2 1 CB A ASP 59 ? ? CG A ASP 59 ? ? OD1 A ASP 59 ? ? 124.63 118.30 6.33 0.90 N 3 1 CB A TYR 134 ? ? CG A TYR 134 ? ? CD1 A TYR 134 ? ? 116.75 121.00 -4.25 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 42 ? ? -105.01 64.40 2 1 ARG A 90 ? ? -134.06 -116.18 3 1 ASN A 114 ? ? -109.94 76.80 4 1 ASP A 130 ? ? -156.79 80.43 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -9 ? A MET 1 2 1 Y 1 A HIS -8 ? A HIS 2 3 1 Y 1 A HIS -7 ? A HIS 3 4 1 Y 1 A HIS -6 ? A HIS 4 5 1 Y 1 A HIS -5 ? A HIS 5 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 PHE N N N N 250 PHE CA C N S 251 PHE C C N N 252 PHE O O N N 253 PHE CB C N N 254 PHE CG C Y N 255 PHE CD1 C Y N 256 PHE CD2 C Y N 257 PHE CE1 C Y N 258 PHE CE2 C Y N 259 PHE CZ C Y N 260 PHE OXT O N N 261 PHE H H N N 262 PHE H2 H N N 263 PHE HA H N N 264 PHE HB2 H N N 265 PHE HB3 H N N 266 PHE HD1 H N N 267 PHE HD2 H N N 268 PHE HE1 H N N 269 PHE HE2 H N N 270 PHE HZ H N N 271 PHE HXT H N N 272 PRO N N N N 273 PRO CA C N S 274 PRO C C N N 275 PRO O O N N 276 PRO CB C N N 277 PRO CG C N N 278 PRO CD C N N 279 PRO OXT O N N 280 PRO H H N N 281 PRO HA H N N 282 PRO HB2 H N N 283 PRO HB3 H N N 284 PRO HG2 H N N 285 PRO HG3 H N N 286 PRO HD2 H N N 287 PRO HD3 H N N 288 PRO HXT H N N 289 SER N N N N 290 SER CA C N S 291 SER C C N N 292 SER O O N N 293 SER CB C N N 294 SER OG O N N 295 SER OXT O N N 296 SER H H N N 297 SER H2 H N N 298 SER HA H N N 299 SER HB2 H N N 300 SER HB3 H N N 301 SER HG H N N 302 SER HXT H N N 303 THR N N N N 304 THR CA C N S 305 THR C C N N 306 THR O O N N 307 THR CB C N R 308 THR OG1 O N N 309 THR CG2 C N N 310 THR OXT O N N 311 THR H H N N 312 THR H2 H N N 313 THR HA H N N 314 THR HB H N N 315 THR HG1 H N N 316 THR HG21 H N N 317 THR HG22 H N N 318 THR HG23 H N N 319 THR HXT H N N 320 TRP N N N N 321 TRP CA C N S 322 TRP C C N N 323 TRP O O N N 324 TRP CB C N N 325 TRP CG C Y N 326 TRP CD1 C Y N 327 TRP CD2 C Y N 328 TRP NE1 N Y N 329 TRP CE2 C Y N 330 TRP CE3 C Y N 331 TRP CZ2 C Y N 332 TRP CZ3 C Y N 333 TRP CH2 C Y N 334 TRP OXT O N N 335 TRP H H N N 336 TRP H2 H N N 337 TRP HA H N N 338 TRP HB2 H N N 339 TRP HB3 H N N 340 TRP HD1 H N N 341 TRP HE1 H N N 342 TRP HE3 H N N 343 TRP HZ2 H N N 344 TRP HZ3 H N N 345 TRP HH2 H N N 346 TRP HXT H N N 347 TYR N N N N 348 TYR CA C N S 349 TYR C C N N 350 TYR O O N N 351 TYR CB C N N 352 TYR CG C Y N 353 TYR CD1 C Y N 354 TYR CD2 C Y N 355 TYR CE1 C Y N 356 TYR CE2 C Y N 357 TYR CZ C Y N 358 TYR OH O N N 359 TYR OXT O N N 360 TYR H H N N 361 TYR H2 H N N 362 TYR HA H N N 363 TYR HB2 H N N 364 TYR HB3 H N N 365 TYR HD1 H N N 366 TYR HD2 H N N 367 TYR HE1 H N N 368 TYR HE2 H N N 369 TYR HH H N N 370 TYR HXT H N N 371 VAL N N N N 372 VAL CA C N S 373 VAL C C N N 374 VAL O O N N 375 VAL CB C N N 376 VAL CG1 C N N 377 VAL CG2 C N N 378 VAL OXT O N N 379 VAL H H N N 380 VAL H2 H N N 381 VAL HA H N N 382 VAL HB H N N 383 VAL HG11 H N N 384 VAL HG12 H N N 385 VAL HG13 H N N 386 VAL HG21 H N N 387 VAL HG22 H N N 388 VAL HG23 H N N 389 VAL HXT H N N 390 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 PHE N CA sing N N 237 PHE N H sing N N 238 PHE N H2 sing N N 239 PHE CA C sing N N 240 PHE CA CB sing N N 241 PHE CA HA sing N N 242 PHE C O doub N N 243 PHE C OXT sing N N 244 PHE CB CG sing N N 245 PHE CB HB2 sing N N 246 PHE CB HB3 sing N N 247 PHE CG CD1 doub Y N 248 PHE CG CD2 sing Y N 249 PHE CD1 CE1 sing Y N 250 PHE CD1 HD1 sing N N 251 PHE CD2 CE2 doub Y N 252 PHE CD2 HD2 sing N N 253 PHE CE1 CZ doub Y N 254 PHE CE1 HE1 sing N N 255 PHE CE2 CZ sing Y N 256 PHE CE2 HE2 sing N N 257 PHE CZ HZ sing N N 258 PHE OXT HXT sing N N 259 PRO N CA sing N N 260 PRO N CD sing N N 261 PRO N H sing N N 262 PRO CA C sing N N 263 PRO CA CB sing N N 264 PRO CA HA sing N N 265 PRO C O doub N N 266 PRO C OXT sing N N 267 PRO CB CG sing N N 268 PRO CB HB2 sing N N 269 PRO CB HB3 sing N N 270 PRO CG CD sing N N 271 PRO CG HG2 sing N N 272 PRO CG HG3 sing N N 273 PRO CD HD2 sing N N 274 PRO CD HD3 sing N N 275 PRO OXT HXT sing N N 276 SER N CA sing N N 277 SER N H sing N N 278 SER N H2 sing N N 279 SER CA C sing N N 280 SER CA CB sing N N 281 SER CA HA sing N N 282 SER C O doub N N 283 SER C OXT sing N N 284 SER CB OG sing N N 285 SER CB HB2 sing N N 286 SER CB HB3 sing N N 287 SER OG HG sing N N 288 SER OXT HXT sing N N 289 THR N CA sing N N 290 THR N H sing N N 291 THR N H2 sing N N 292 THR CA C sing N N 293 THR CA CB sing N N 294 THR CA HA sing N N 295 THR C O doub N N 296 THR C OXT sing N N 297 THR CB OG1 sing N N 298 THR CB CG2 sing N N 299 THR CB HB sing N N 300 THR OG1 HG1 sing N N 301 THR CG2 HG21 sing N N 302 THR CG2 HG22 sing N N 303 THR CG2 HG23 sing N N 304 THR OXT HXT sing N N 305 TRP N CA sing N N 306 TRP N H sing N N 307 TRP N H2 sing N N 308 TRP CA C sing N N 309 TRP CA CB sing N N 310 TRP CA HA sing N N 311 TRP C O doub N N 312 TRP C OXT sing N N 313 TRP CB CG sing N N 314 TRP CB HB2 sing N N 315 TRP CB HB3 sing N N 316 TRP CG CD1 doub Y N 317 TRP CG CD2 sing Y N 318 TRP CD1 NE1 sing Y N 319 TRP CD1 HD1 sing N N 320 TRP CD2 CE2 doub Y N 321 TRP CD2 CE3 sing Y N 322 TRP NE1 CE2 sing Y N 323 TRP NE1 HE1 sing N N 324 TRP CE2 CZ2 sing Y N 325 TRP CE3 CZ3 doub Y N 326 TRP CE3 HE3 sing N N 327 TRP CZ2 CH2 doub Y N 328 TRP CZ2 HZ2 sing N N 329 TRP CZ3 CH2 sing Y N 330 TRP CZ3 HZ3 sing N N 331 TRP CH2 HH2 sing N N 332 TRP OXT HXT sing N N 333 TYR N CA sing N N 334 TYR N H sing N N 335 TYR N H2 sing N N 336 TYR CA C sing N N 337 TYR CA CB sing N N 338 TYR CA HA sing N N 339 TYR C O doub N N 340 TYR C OXT sing N N 341 TYR CB CG sing N N 342 TYR CB HB2 sing N N 343 TYR CB HB3 sing N N 344 TYR CG CD1 doub Y N 345 TYR CG CD2 sing Y N 346 TYR CD1 CE1 sing Y N 347 TYR CD1 HD1 sing N N 348 TYR CD2 CE2 doub Y N 349 TYR CD2 HD2 sing N N 350 TYR CE1 CZ doub Y N 351 TYR CE1 HE1 sing N N 352 TYR CE2 CZ sing Y N 353 TYR CE2 HE2 sing N N 354 TYR CZ OH sing N N 355 TYR OH HH sing N N 356 TYR OXT HXT sing N N 357 VAL N CA sing N N 358 VAL N H sing N N 359 VAL N H2 sing N N 360 VAL CA C sing N N 361 VAL CA CB sing N N 362 VAL CA HA sing N N 363 VAL C O doub N N 364 VAL C OXT sing N N 365 VAL CB CG1 sing N N 366 VAL CB CG2 sing N N 367 VAL CB HB sing N N 368 VAL CG1 HG11 sing N N 369 VAL CG1 HG12 sing N N 370 VAL CG1 HG13 sing N N 371 VAL CG2 HG21 sing N N 372 VAL CG2 HG22 sing N N 373 VAL CG2 HG23 sing N N 374 VAL OXT HXT sing N N 375 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1X23 _pdbx_initial_refinement_model.details 'PDB ENTRY 1X23' #