data_3L3P # _entry.id 3L3P # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L3P pdb_00003l3p 10.2210/pdb3l3p/pdb RCSB RCSB056793 ? ? WWPDB D_1000056793 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3ckd 'Crystal structure of the C-terminal domain of the Shigella type III effector IpaH' unspecified PDB 3cvr 'Crystal structure of the full length IpaH3' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3L3P _pdbx_database_status.recvd_initial_deposition_date 2009-12-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Seyedarabi, A.' 1 'Sullivan, J.A.' 2 'Sasakawa, C.' 3 'Pickersgill, R.W.' 4 # _citation.id primary _citation.title 'A disulfide driven domain swap switches off the activity of Shigella IpaH9.8 E3 ligase' _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 584 _citation.page_first 4163 _citation.page_last 4168 _citation.year 2010 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20831869 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2010.09.006 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Seyedarabi, A.' 1 ? primary 'Sullivan, J.A.' 2 ? primary 'Sasakawa, C.' 3 ? primary 'Pickersgill, R.W.' 4 ? # _cell.entry_id 3L3P _cell.length_a 92.659 _cell.length_b 92.659 _cell.length_c 135.612 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3L3P _symmetry.space_group_name_H-M 'P 62 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description IpaH9.8 _entity.formula_weight 33460.027 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 6.3.2.19 _entity.pdbx_mutation ? _entity.pdbx_fragment 'C-terminal domain (domain swapped), residues 254-545' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD ATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEK LQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVA DRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS ; _entity_poly.pdbx_seq_one_letter_code_can ;SLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAAD ATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEK LQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVA DRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 LEU n 1 3 ALA n 1 4 ASP n 1 5 ALA n 1 6 VAL n 1 7 THR n 1 8 ALA n 1 9 TRP n 1 10 PHE n 1 11 PRO n 1 12 GLU n 1 13 ASN n 1 14 LYS n 1 15 GLN n 1 16 SER n 1 17 ASP n 1 18 VAL n 1 19 SER n 1 20 GLN n 1 21 ILE n 1 22 TRP n 1 23 HIS n 1 24 ALA n 1 25 PHE n 1 26 GLU n 1 27 HIS n 1 28 GLU n 1 29 GLU n 1 30 HIS n 1 31 ALA n 1 32 ASN n 1 33 THR n 1 34 PHE n 1 35 SER n 1 36 ALA n 1 37 PHE n 1 38 LEU n 1 39 ASP n 1 40 ARG n 1 41 LEU n 1 42 SER n 1 43 ASP n 1 44 THR n 1 45 VAL n 1 46 SER n 1 47 ALA n 1 48 ARG n 1 49 ASN n 1 50 THR n 1 51 SER n 1 52 GLY n 1 53 PHE n 1 54 ARG n 1 55 GLU n 1 56 GLN n 1 57 VAL n 1 58 ALA n 1 59 ALA n 1 60 TRP n 1 61 LEU n 1 62 GLU n 1 63 LYS n 1 64 LEU n 1 65 SER n 1 66 ALA n 1 67 SER n 1 68 ALA n 1 69 GLU n 1 70 LEU n 1 71 ARG n 1 72 GLN n 1 73 GLN n 1 74 SER n 1 75 PHE n 1 76 ALA n 1 77 VAL n 1 78 ALA n 1 79 ALA n 1 80 ASP n 1 81 ALA n 1 82 THR n 1 83 GLU n 1 84 SER n 1 85 CYS n 1 86 GLU n 1 87 ASP n 1 88 ARG n 1 89 VAL n 1 90 ALA n 1 91 LEU n 1 92 THR n 1 93 TRP n 1 94 ASN n 1 95 ASN n 1 96 LEU n 1 97 ARG n 1 98 LYS n 1 99 THR n 1 100 LEU n 1 101 LEU n 1 102 VAL n 1 103 HIS n 1 104 GLN n 1 105 ALA n 1 106 SER n 1 107 GLU n 1 108 GLY n 1 109 LEU n 1 110 PHE n 1 111 ASP n 1 112 ASN n 1 113 ASP n 1 114 THR n 1 115 GLY n 1 116 ALA n 1 117 LEU n 1 118 LEU n 1 119 SER n 1 120 LEU n 1 121 GLY n 1 122 ARG n 1 123 GLU n 1 124 MET n 1 125 PHE n 1 126 ARG n 1 127 LEU n 1 128 GLU n 1 129 ILE n 1 130 LEU n 1 131 GLU n 1 132 ASP n 1 133 ILE n 1 134 ALA n 1 135 ARG n 1 136 ASP n 1 137 LYS n 1 138 VAL n 1 139 ARG n 1 140 THR n 1 141 LEU n 1 142 HIS n 1 143 PHE n 1 144 VAL n 1 145 ASP n 1 146 GLU n 1 147 ILE n 1 148 GLU n 1 149 VAL n 1 150 TYR n 1 151 LEU n 1 152 ALA n 1 153 PHE n 1 154 GLN n 1 155 THR n 1 156 MET n 1 157 LEU n 1 158 ALA n 1 159 GLU n 1 160 LYS n 1 161 LEU n 1 162 GLN n 1 163 LEU n 1 164 SER n 1 165 THR n 1 166 ALA n 1 167 VAL n 1 168 LYS n 1 169 GLU n 1 170 MET n 1 171 ARG n 1 172 PHE n 1 173 TYR n 1 174 GLY n 1 175 VAL n 1 176 SER n 1 177 GLY n 1 178 VAL n 1 179 THR n 1 180 ALA n 1 181 ASN n 1 182 ASP n 1 183 LEU n 1 184 ARG n 1 185 THR n 1 186 ALA n 1 187 GLU n 1 188 ALA n 1 189 MET n 1 190 VAL n 1 191 ARG n 1 192 SER n 1 193 ARG n 1 194 GLU n 1 195 GLU n 1 196 ASN n 1 197 GLU n 1 198 PHE n 1 199 THR n 1 200 ASP n 1 201 TRP n 1 202 PHE n 1 203 SER n 1 204 LEU n 1 205 TRP n 1 206 GLY n 1 207 PRO n 1 208 TRP n 1 209 HIS n 1 210 ALA n 1 211 VAL n 1 212 LEU n 1 213 LYS n 1 214 ARG n 1 215 THR n 1 216 GLU n 1 217 ALA n 1 218 ASP n 1 219 ARG n 1 220 TRP n 1 221 ALA n 1 222 GLN n 1 223 ALA n 1 224 GLU n 1 225 GLU n 1 226 GLN n 1 227 LYS n 1 228 TYR n 1 229 GLU n 1 230 MET n 1 231 LEU n 1 232 GLU n 1 233 ASN n 1 234 GLU n 1 235 TYR n 1 236 PRO n 1 237 GLN n 1 238 ARG n 1 239 VAL n 1 240 ALA n 1 241 ASP n 1 242 ARG n 1 243 LEU n 1 244 LYS n 1 245 ALA n 1 246 SER n 1 247 GLY n 1 248 LEU n 1 249 SER n 1 250 GLY n 1 251 ASP n 1 252 ALA n 1 253 ASP n 1 254 ALA n 1 255 GLU n 1 256 ARG n 1 257 GLU n 1 258 ALA n 1 259 GLY n 1 260 ALA n 1 261 GLN n 1 262 VAL n 1 263 MET n 1 264 ARG n 1 265 GLU n 1 266 THR n 1 267 GLU n 1 268 GLN n 1 269 GLN n 1 270 ILE n 1 271 TYR n 1 272 ARG n 1 273 GLN n 1 274 LEU n 1 275 THR n 1 276 ASP n 1 277 GLU n 1 278 VAL n 1 279 LEU n 1 280 ALA n 1 281 LEU n 1 282 ARG n 1 283 LEU n 1 284 SER n 1 285 GLU n 1 286 ASN n 1 287 GLY n 1 288 SER n 1 289 GLN n 1 290 LEU n 1 291 HIS n 1 292 HIS n 1 293 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ipaH9.8 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain YSH6000 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Shigella flexneri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 623 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET14b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O85159_SHIFL _struct_ref.pdbx_db_accession O85159 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;LADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADA TESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKL QLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEMLENEYPQRVAD RLKASGLSGDADAEREAGAQVMRETEQQIYRQLTDEVLALRLSENGSQLHHS ; _struct_ref.pdbx_align_begin 254 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L3P _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 293 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O85159 _struct_ref_seq.db_align_beg 254 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 545 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 254 _struct_ref_seq.pdbx_auth_seq_align_end 545 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3L3P _struct_ref_seq_dif.mon_id SER _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code O85159 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 253 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3L3P _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 51.02 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.pdbx_details '0.2M sodium acetate trihydrate, 0.1M Tris pH 8.5, 30% polyethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.pdbx_collection_date 2008-05-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.04496 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SRS BEAMLINE PX10.1' _diffrn_source.pdbx_synchrotron_site SRS _diffrn_source.pdbx_synchrotron_beamline PX10.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.04496 # _reflns.entry_id 3L3P _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 38.46 _reflns.d_resolution_high 3.2 _reflns.number_obs 5984 _reflns.number_all 6131 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs 0.083 _reflns.pdbx_Rsym_value 0.083 _reflns.pdbx_netI_over_sigmaI 21.7 _reflns.B_iso_Wilson_estimate 75.8 _reflns.pdbx_redundancy 9.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 3.2 _reflns_shell.d_res_low 3.37 _reflns_shell.percent_possible_all 91.8 _reflns_shell.Rmerge_I_obs 0.530 _reflns_shell.pdbx_Rsym_value 0.530 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 9.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 785 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3L3P _refine.ls_number_reflns_obs 5689 _refine.ls_number_reflns_all 5841 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.53 _refine.ls_d_res_high 3.20 _refine.ls_percent_reflns_obs 97.40 _refine.ls_R_factor_obs 0.290 _refine.ls_R_factor_all 0.290 _refine.ls_R_factor_R_work 0.289 _refine.ls_R_factor_R_free 0.311 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.5 _refine.ls_number_reflns_R_free 268 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.897 _refine.correlation_coeff_Fo_to_Fc_free 0.923 _refine.B_iso_mean 85.882 _refine.aniso_B[1][1] 0.01 _refine.aniso_B[2][2] 0.01 _refine.aniso_B[3][3] -0.01 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB ENTRY 3ckd; chain A' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free 0.620 _refine.overall_SU_ML 0.562 _refine.overall_SU_B 35.258 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2109 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2109 _refine_hist.d_res_high 3.20 _refine_hist.d_res_low 34.53 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.006 0.021 ? 2145 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 0.848 1.932 ? 2901 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.148 5.000 ? 259 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.816 24.407 ? 118 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 17.871 15.000 ? 369 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 16.248 15.000 ? 19 'X-RAY DIFFRACTION' ? r_chiral_restr 0.062 0.200 ? 320 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.002 0.020 ? 1650 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 0.209 1.500 ? 1306 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 0.386 2.000 ? 2079 'X-RAY DIFFRACTION' ? r_scbond_it 0.242 3.000 ? 839 'X-RAY DIFFRACTION' ? r_scangle_it 0.445 4.500 ? 822 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.200 _refine_ls_shell.d_res_low 3.283 _refine_ls_shell.number_reflns_R_work 385 _refine_ls_shell.R_factor_R_work 0.345 _refine_ls_shell.percent_reflns_obs 90.93 _refine_ls_shell.R_factor_R_free 0.371 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 16 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 385 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 3L3P _struct.title 'Crystal structure of the C-terminal domain of Shigella type III effector IpaH9.8, with a novel domain swap' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L3P _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text 'E3 ligase, Domain swap, CXD motif, LIGASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 1 ? ALA A 8 ? SER A 253 ALA A 260 1 ? 8 HELX_P HELX_P2 2 PRO A 11 ? TRP A 22 ? PRO A 263 TRP A 274 1 ? 12 HELX_P HELX_P3 3 HIS A 23 ? PHE A 25 ? HIS A 275 PHE A 277 5 ? 3 HELX_P HELX_P4 4 HIS A 30 ? SER A 42 ? HIS A 282 SER A 294 1 ? 13 HELX_P HELX_P5 5 GLY A 52 ? SER A 67 ? GLY A 304 SER A 319 1 ? 16 HELX_P HELX_P6 6 SER A 67 ? GLY A 108 ? SER A 319 GLY A 360 1 ? 42 HELX_P HELX_P7 7 ASP A 113 ? ARG A 135 ? ASP A 365 ARG A 387 1 ? 23 HELX_P HELX_P8 8 ILE A 147 ? LEU A 157 ? ILE A 399 LEU A 409 1 ? 11 HELX_P HELX_P9 9 ASN A 181 ? GLU A 197 ? ASN A 433 GLU A 449 1 ? 17 HELX_P HELX_P10 10 PHE A 198 ? LEU A 204 ? PHE A 450 LEU A 456 1 ? 7 HELX_P HELX_P11 11 TRP A 205 ? THR A 215 ? TRP A 457 THR A 467 1 ? 11 HELX_P HELX_P12 12 GLU A 216 ? ASN A 233 ? GLU A 468 ASN A 485 1 ? 18 HELX_P HELX_P13 13 ASN A 233 ? GLY A 247 ? ASN A 485 GLY A 499 1 ? 15 HELX_P HELX_P14 14 ASP A 251 ? LEU A 279 ? ASP A 503 LEU A 531 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _database_PDB_matrix.entry_id 3L3P _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3L3P _atom_sites.fract_transf_matrix[1][1] 0.010792 _atom_sites.fract_transf_matrix[1][2] 0.006231 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012462 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007374 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 253 253 SER SER A . n A 1 2 LEU 2 254 254 LEU LEU A . n A 1 3 ALA 3 255 255 ALA ALA A . n A 1 4 ASP 4 256 256 ASP ASP A . n A 1 5 ALA 5 257 257 ALA ALA A . n A 1 6 VAL 6 258 258 VAL VAL A . n A 1 7 THR 7 259 259 THR THR A . n A 1 8 ALA 8 260 260 ALA ALA A . n A 1 9 TRP 9 261 261 TRP TRP A . n A 1 10 PHE 10 262 262 PHE PHE A . n A 1 11 PRO 11 263 263 PRO PRO A . n A 1 12 GLU 12 264 264 GLU GLU A . n A 1 13 ASN 13 265 265 ASN ASN A . n A 1 14 LYS 14 266 266 LYS LYS A . n A 1 15 GLN 15 267 267 GLN GLN A . n A 1 16 SER 16 268 268 SER SER A . n A 1 17 ASP 17 269 269 ASP ASP A . n A 1 18 VAL 18 270 270 VAL VAL A . n A 1 19 SER 19 271 271 SER SER A . n A 1 20 GLN 20 272 272 GLN GLN A . n A 1 21 ILE 21 273 273 ILE ILE A . n A 1 22 TRP 22 274 274 TRP TRP A . n A 1 23 HIS 23 275 275 HIS HIS A . n A 1 24 ALA 24 276 276 ALA ALA A . n A 1 25 PHE 25 277 277 PHE PHE A . n A 1 26 GLU 26 278 278 GLU GLU A . n A 1 27 HIS 27 279 279 HIS HIS A . n A 1 28 GLU 28 280 280 GLU GLU A . n A 1 29 GLU 29 281 281 GLU GLU A . n A 1 30 HIS 30 282 282 HIS HIS A . n A 1 31 ALA 31 283 283 ALA ALA A . n A 1 32 ASN 32 284 284 ASN ASN A . n A 1 33 THR 33 285 285 THR THR A . n A 1 34 PHE 34 286 286 PHE PHE A . n A 1 35 SER 35 287 287 SER SER A . n A 1 36 ALA 36 288 288 ALA ALA A . n A 1 37 PHE 37 289 289 PHE PHE A . n A 1 38 LEU 38 290 290 LEU LEU A . n A 1 39 ASP 39 291 291 ASP ASP A . n A 1 40 ARG 40 292 292 ARG ARG A . n A 1 41 LEU 41 293 293 LEU LEU A . n A 1 42 SER 42 294 294 SER SER A . n A 1 43 ASP 43 295 295 ASP ASP A . n A 1 44 THR 44 296 296 THR THR A . n A 1 45 VAL 45 297 297 VAL VAL A . n A 1 46 SER 46 298 298 SER SER A . n A 1 47 ALA 47 299 ? ? ? A . n A 1 48 ARG 48 300 ? ? ? A . n A 1 49 ASN 49 301 ? ? ? A . n A 1 50 THR 50 302 302 THR THR A . n A 1 51 SER 51 303 303 SER SER A . n A 1 52 GLY 52 304 304 GLY GLY A . n A 1 53 PHE 53 305 305 PHE PHE A . n A 1 54 ARG 54 306 306 ARG ARG A . n A 1 55 GLU 55 307 307 GLU GLU A . n A 1 56 GLN 56 308 308 GLN GLN A . n A 1 57 VAL 57 309 309 VAL VAL A . n A 1 58 ALA 58 310 310 ALA ALA A . n A 1 59 ALA 59 311 311 ALA ALA A . n A 1 60 TRP 60 312 312 TRP TRP A . n A 1 61 LEU 61 313 313 LEU LEU A . n A 1 62 GLU 62 314 314 GLU GLU A . n A 1 63 LYS 63 315 315 LYS LYS A . n A 1 64 LEU 64 316 316 LEU LEU A . n A 1 65 SER 65 317 317 SER SER A . n A 1 66 ALA 66 318 318 ALA ALA A . n A 1 67 SER 67 319 319 SER SER A . n A 1 68 ALA 68 320 320 ALA ALA A . n A 1 69 GLU 69 321 321 GLU GLU A . n A 1 70 LEU 70 322 322 LEU LEU A . n A 1 71 ARG 71 323 323 ARG ARG A . n A 1 72 GLN 72 324 324 GLN GLN A . n A 1 73 GLN 73 325 325 GLN GLN A . n A 1 74 SER 74 326 326 SER SER A . n A 1 75 PHE 75 327 327 PHE PHE A . n A 1 76 ALA 76 328 328 ALA ALA A . n A 1 77 VAL 77 329 329 VAL VAL A . n A 1 78 ALA 78 330 330 ALA ALA A . n A 1 79 ALA 79 331 331 ALA ALA A . n A 1 80 ASP 80 332 332 ASP ASP A . n A 1 81 ALA 81 333 333 ALA ALA A . n A 1 82 THR 82 334 334 THR THR A . n A 1 83 GLU 83 335 335 GLU GLU A . n A 1 84 SER 84 336 336 SER SER A . n A 1 85 CYS 85 337 337 CYS CYS A . n A 1 86 GLU 86 338 338 GLU GLU A . n A 1 87 ASP 87 339 339 ASP ASP A . n A 1 88 ARG 88 340 340 ARG ARG A . n A 1 89 VAL 89 341 341 VAL VAL A . n A 1 90 ALA 90 342 342 ALA ALA A . n A 1 91 LEU 91 343 343 LEU LEU A . n A 1 92 THR 92 344 344 THR THR A . n A 1 93 TRP 93 345 345 TRP TRP A . n A 1 94 ASN 94 346 346 ASN ASN A . n A 1 95 ASN 95 347 347 ASN ASN A . n A 1 96 LEU 96 348 348 LEU LEU A . n A 1 97 ARG 97 349 349 ARG ARG A . n A 1 98 LYS 98 350 350 LYS LYS A . n A 1 99 THR 99 351 351 THR THR A . n A 1 100 LEU 100 352 352 LEU LEU A . n A 1 101 LEU 101 353 353 LEU LEU A . n A 1 102 VAL 102 354 354 VAL VAL A . n A 1 103 HIS 103 355 355 HIS HIS A . n A 1 104 GLN 104 356 356 GLN GLN A . n A 1 105 ALA 105 357 357 ALA ALA A . n A 1 106 SER 106 358 358 SER SER A . n A 1 107 GLU 107 359 359 GLU GLU A . n A 1 108 GLY 108 360 360 GLY GLY A . n A 1 109 LEU 109 361 361 LEU LEU A . n A 1 110 PHE 110 362 362 PHE PHE A . n A 1 111 ASP 111 363 363 ASP ASP A . n A 1 112 ASN 112 364 364 ASN ASN A . n A 1 113 ASP 113 365 365 ASP ASP A . n A 1 114 THR 114 366 366 THR THR A . n A 1 115 GLY 115 367 367 GLY GLY A . n A 1 116 ALA 116 368 368 ALA ALA A . n A 1 117 LEU 117 369 369 LEU LEU A . n A 1 118 LEU 118 370 370 LEU LEU A . n A 1 119 SER 119 371 371 SER SER A . n A 1 120 LEU 120 372 372 LEU LEU A . n A 1 121 GLY 121 373 373 GLY GLY A . n A 1 122 ARG 122 374 374 ARG ARG A . n A 1 123 GLU 123 375 375 GLU GLU A . n A 1 124 MET 124 376 376 MET MET A . n A 1 125 PHE 125 377 377 PHE PHE A . n A 1 126 ARG 126 378 378 ARG ARG A . n A 1 127 LEU 127 379 379 LEU LEU A . n A 1 128 GLU 128 380 380 GLU GLU A . n A 1 129 ILE 129 381 381 ILE ILE A . n A 1 130 LEU 130 382 382 LEU LEU A . n A 1 131 GLU 131 383 383 GLU GLU A . n A 1 132 ASP 132 384 384 ASP ASP A . n A 1 133 ILE 133 385 385 ILE ILE A . n A 1 134 ALA 134 386 386 ALA ALA A . n A 1 135 ARG 135 387 387 ARG ARG A . n A 1 136 ASP 136 388 388 ASP ASP A . n A 1 137 LYS 137 389 389 LYS LYS A . n A 1 138 VAL 138 390 390 VAL VAL A . n A 1 139 ARG 139 391 ? ? ? A . n A 1 140 THR 140 392 ? ? ? A . n A 1 141 LEU 141 393 ? ? ? A . n A 1 142 HIS 142 394 ? ? ? A . n A 1 143 PHE 143 395 ? ? ? A . n A 1 144 VAL 144 396 ? ? ? A . n A 1 145 ASP 145 397 ? ? ? A . n A 1 146 GLU 146 398 398 GLU GLU A . n A 1 147 ILE 147 399 399 ILE ILE A . n A 1 148 GLU 148 400 400 GLU GLU A . n A 1 149 VAL 149 401 401 VAL VAL A . n A 1 150 TYR 150 402 402 TYR TYR A . n A 1 151 LEU 151 403 403 LEU LEU A . n A 1 152 ALA 152 404 404 ALA ALA A . n A 1 153 PHE 153 405 405 PHE PHE A . n A 1 154 GLN 154 406 406 GLN GLN A . n A 1 155 THR 155 407 407 THR THR A . n A 1 156 MET 156 408 408 MET MET A . n A 1 157 LEU 157 409 409 LEU LEU A . n A 1 158 ALA 158 410 410 ALA ALA A . n A 1 159 GLU 159 411 411 GLU GLU A . n A 1 160 LYS 160 412 412 LYS LYS A . n A 1 161 LEU 161 413 413 LEU LEU A . n A 1 162 GLN 162 414 414 GLN GLN A . n A 1 163 LEU 163 415 415 LEU LEU A . n A 1 164 SER 164 416 416 SER SER A . n A 1 165 THR 165 417 417 THR THR A . n A 1 166 ALA 166 418 ? ? ? A . n A 1 167 VAL 167 419 ? ? ? A . n A 1 168 LYS 168 420 ? ? ? A . n A 1 169 GLU 169 421 ? ? ? A . n A 1 170 MET 170 422 ? ? ? A . n A 1 171 ARG 171 423 ? ? ? A . n A 1 172 PHE 172 424 ? ? ? A . n A 1 173 TYR 173 425 ? ? ? A . n A 1 174 GLY 174 426 ? ? ? A . n A 1 175 VAL 175 427 427 VAL VAL A . n A 1 176 SER 176 428 428 SER SER A . n A 1 177 GLY 177 429 429 GLY GLY A . n A 1 178 VAL 178 430 430 VAL VAL A . n A 1 179 THR 179 431 431 THR THR A . n A 1 180 ALA 180 432 432 ALA ALA A . n A 1 181 ASN 181 433 433 ASN ASN A . n A 1 182 ASP 182 434 434 ASP ASP A . n A 1 183 LEU 183 435 435 LEU LEU A . n A 1 184 ARG 184 436 436 ARG ARG A . n A 1 185 THR 185 437 437 THR THR A . n A 1 186 ALA 186 438 438 ALA ALA A . n A 1 187 GLU 187 439 439 GLU GLU A . n A 1 188 ALA 188 440 440 ALA ALA A . n A 1 189 MET 189 441 441 MET MET A . n A 1 190 VAL 190 442 442 VAL VAL A . n A 1 191 ARG 191 443 443 ARG ARG A . n A 1 192 SER 192 444 444 SER SER A . n A 1 193 ARG 193 445 445 ARG ARG A . n A 1 194 GLU 194 446 446 GLU GLU A . n A 1 195 GLU 195 447 447 GLU GLU A . n A 1 196 ASN 196 448 448 ASN ASN A . n A 1 197 GLU 197 449 449 GLU GLU A . n A 1 198 PHE 198 450 450 PHE PHE A . n A 1 199 THR 199 451 451 THR THR A . n A 1 200 ASP 200 452 452 ASP ASP A . n A 1 201 TRP 201 453 453 TRP TRP A . n A 1 202 PHE 202 454 454 PHE PHE A . n A 1 203 SER 203 455 455 SER SER A . n A 1 204 LEU 204 456 456 LEU LEU A . n A 1 205 TRP 205 457 457 TRP TRP A . n A 1 206 GLY 206 458 458 GLY GLY A . n A 1 207 PRO 207 459 459 PRO PRO A . n A 1 208 TRP 208 460 460 TRP TRP A . n A 1 209 HIS 209 461 461 HIS HIS A . n A 1 210 ALA 210 462 462 ALA ALA A . n A 1 211 VAL 211 463 463 VAL VAL A . n A 1 212 LEU 212 464 464 LEU LEU A . n A 1 213 LYS 213 465 465 LYS LYS A . n A 1 214 ARG 214 466 466 ARG ARG A . n A 1 215 THR 215 467 467 THR THR A . n A 1 216 GLU 216 468 468 GLU GLU A . n A 1 217 ALA 217 469 469 ALA ALA A . n A 1 218 ASP 218 470 470 ASP ASP A . n A 1 219 ARG 219 471 471 ARG ARG A . n A 1 220 TRP 220 472 472 TRP TRP A . n A 1 221 ALA 221 473 473 ALA ALA A . n A 1 222 GLN 222 474 474 GLN GLN A . n A 1 223 ALA 223 475 475 ALA ALA A . n A 1 224 GLU 224 476 476 GLU GLU A . n A 1 225 GLU 225 477 477 GLU GLU A . n A 1 226 GLN 226 478 478 GLN GLN A . n A 1 227 LYS 227 479 479 LYS LYS A . n A 1 228 TYR 228 480 480 TYR TYR A . n A 1 229 GLU 229 481 481 GLU GLU A . n A 1 230 MET 230 482 482 MET MET A . n A 1 231 LEU 231 483 483 LEU LEU A . n A 1 232 GLU 232 484 484 GLU GLU A . n A 1 233 ASN 233 485 485 ASN ASN A . n A 1 234 GLU 234 486 486 GLU GLU A . n A 1 235 TYR 235 487 487 TYR TYR A . n A 1 236 PRO 236 488 488 PRO PRO A . n A 1 237 GLN 237 489 489 GLN GLN A . n A 1 238 ARG 238 490 490 ARG ARG A . n A 1 239 VAL 239 491 491 VAL VAL A . n A 1 240 ALA 240 492 492 ALA ALA A . n A 1 241 ASP 241 493 493 ASP ASP A . n A 1 242 ARG 242 494 494 ARG ARG A . n A 1 243 LEU 243 495 495 LEU LEU A . n A 1 244 LYS 244 496 496 LYS LYS A . n A 1 245 ALA 245 497 497 ALA ALA A . n A 1 246 SER 246 498 498 SER SER A . n A 1 247 GLY 247 499 499 GLY GLY A . n A 1 248 LEU 248 500 500 LEU LEU A . n A 1 249 SER 249 501 501 SER SER A . n A 1 250 GLY 250 502 502 GLY GLY A . n A 1 251 ASP 251 503 503 ASP ASP A . n A 1 252 ALA 252 504 504 ALA ALA A . n A 1 253 ASP 253 505 505 ASP ASP A . n A 1 254 ALA 254 506 506 ALA ALA A . n A 1 255 GLU 255 507 507 GLU GLU A . n A 1 256 ARG 256 508 508 ARG ARG A . n A 1 257 GLU 257 509 509 GLU GLU A . n A 1 258 ALA 258 510 510 ALA ALA A . n A 1 259 GLY 259 511 511 GLY GLY A . n A 1 260 ALA 260 512 512 ALA ALA A . n A 1 261 GLN 261 513 513 GLN GLN A . n A 1 262 VAL 262 514 514 VAL VAL A . n A 1 263 MET 263 515 515 MET MET A . n A 1 264 ARG 264 516 516 ARG ARG A . n A 1 265 GLU 265 517 517 GLU GLU A . n A 1 266 THR 266 518 518 THR THR A . n A 1 267 GLU 267 519 519 GLU GLU A . n A 1 268 GLN 268 520 520 GLN GLN A . n A 1 269 GLN 269 521 521 GLN GLN A . n A 1 270 ILE 270 522 522 ILE ILE A . n A 1 271 TYR 271 523 523 TYR TYR A . n A 1 272 ARG 272 524 524 ARG ARG A . n A 1 273 GLN 273 525 525 GLN GLN A . n A 1 274 LEU 274 526 526 LEU LEU A . n A 1 275 THR 275 527 527 THR THR A . n A 1 276 ASP 276 528 528 ASP ASP A . n A 1 277 GLU 277 529 529 GLU GLU A . n A 1 278 VAL 278 530 530 VAL VAL A . n A 1 279 LEU 279 531 531 LEU LEU A . n A 1 280 ALA 280 532 532 ALA ALA A . n A 1 281 LEU 281 533 533 LEU LEU A . n A 1 282 ARG 282 534 534 ARG ARG A . n A 1 283 LEU 283 535 ? ? ? A . n A 1 284 SER 284 536 ? ? ? A . n A 1 285 GLU 285 537 ? ? ? A . n A 1 286 ASN 286 538 ? ? ? A . n A 1 287 GLY 287 539 ? ? ? A . n A 1 288 SER 288 540 ? ? ? A . n A 1 289 GLN 289 541 ? ? ? A . n A 1 290 LEU 290 542 ? ? ? A . n A 1 291 HIS 291 543 ? ? ? A . n A 1 292 HIS 292 544 ? ? ? A . n A 1 293 SER 293 545 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3030 ? 1 MORE -26 ? 1 'SSA (A^2)' 29730 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-09-08 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-11-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOLREP phasing . ? 1 REFMAC refinement 5.5.0102 ? 2 MOSFLM 'data reduction' . ? 3 SCALA 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 279 ? ? -108.44 56.03 2 1 HIS A 282 ? ? 68.64 -2.63 3 1 GLN A 414 ? ? 61.81 75.82 4 1 SER A 428 ? ? 102.75 -69.51 5 1 GLU A 449 ? ? -100.41 -78.82 6 1 PHE A 450 ? ? 8.26 -70.65 7 1 THR A 467 ? ? -76.95 -75.74 8 1 ASN A 485 ? ? -82.37 -72.29 9 1 SER A 501 ? ? -67.36 81.77 10 1 ASP A 503 ? ? 55.08 116.85 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 299 ? A ALA 47 2 1 Y 1 A ARG 300 ? A ARG 48 3 1 Y 1 A ASN 301 ? A ASN 49 4 1 Y 1 A ARG 391 ? A ARG 139 5 1 Y 1 A THR 392 ? A THR 140 6 1 Y 1 A LEU 393 ? A LEU 141 7 1 Y 1 A HIS 394 ? A HIS 142 8 1 Y 1 A PHE 395 ? A PHE 143 9 1 Y 1 A VAL 396 ? A VAL 144 10 1 Y 1 A ASP 397 ? A ASP 145 11 1 Y 1 A ALA 418 ? A ALA 166 12 1 Y 1 A VAL 419 ? A VAL 167 13 1 Y 1 A LYS 420 ? A LYS 168 14 1 Y 1 A GLU 421 ? A GLU 169 15 1 Y 1 A MET 422 ? A MET 170 16 1 Y 1 A ARG 423 ? A ARG 171 17 1 Y 1 A PHE 424 ? A PHE 172 18 1 Y 1 A TYR 425 ? A TYR 173 19 1 Y 1 A GLY 426 ? A GLY 174 20 1 Y 1 A LEU 535 ? A LEU 283 21 1 Y 1 A SER 536 ? A SER 284 22 1 Y 1 A GLU 537 ? A GLU 285 23 1 Y 1 A ASN 538 ? A ASN 286 24 1 Y 1 A GLY 539 ? A GLY 287 25 1 Y 1 A SER 540 ? A SER 288 26 1 Y 1 A GLN 541 ? A GLN 289 27 1 Y 1 A LEU 542 ? A LEU 290 28 1 Y 1 A HIS 543 ? A HIS 291 29 1 Y 1 A HIS 544 ? A HIS 292 30 1 Y 1 A SER 545 ? A SER 293 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3CKD _pdbx_initial_refinement_model.details 'PDB ENTRY 3ckd; chain A' #