data_3L4E # _entry.id 3L4E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3L4E RCSB RCSB056818 WWPDB D_1000056818 # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id idp02527 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3L4E _pdbx_database_status.recvd_initial_deposition_date 2009-12-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brunzelle, J.S.' 1 'Onopriyenko, O.' 2 'Savchenko, A.' 3 'Anderson, W.F.' 4 'Center for Structural Genomics of Infectious Diseases (CSGID)' 5 # _citation.id primary _citation.title '1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Brunzelle, J.S.' 1 primary 'Onopriyenko, O.' 2 primary 'Savchenko, A.' 3 primary 'Anderson, W.F.' 4 primary 'Center for Structural Genomics of Infectious Diseases (CSGID)' 5 # _cell.entry_id 3L4E _cell.length_a 67.821 _cell.length_b 67.821 _cell.length_c 155.169 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3L4E _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized peptidase Lmo0363' 22963.889 1 3.4.21.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 185 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;A(MSE)KNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTK LRKNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQT(MSE)DSTKKAVNLTNYDALN LVDFSTLPHYNNTPFKEITQKIVTEYAGKSQIYPISNHEAIFIRGKEVITKRLS ; _entity_poly.pdbx_seq_one_letter_code_can ;AMKNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKN DFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLP HYNNTPFKEITQKIVTEYAGKSQIYPISNHEAIFIRGKEVITKRLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier idp02527 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MSE n 1 3 LYS n 1 4 ASN n 1 5 LEU n 1 6 PHE n 1 7 LEU n 1 8 THR n 1 9 SER n 1 10 SER n 1 11 PHE n 1 12 LYS n 1 13 ASP n 1 14 VAL n 1 15 VAL n 1 16 PRO n 1 17 LEU n 1 18 PHE n 1 19 THR n 1 20 GLU n 1 21 PHE n 1 22 GLU n 1 23 SER n 1 24 ASN n 1 25 LEU n 1 26 GLN n 1 27 GLY n 1 28 LYS n 1 29 THR n 1 30 VAL n 1 31 THR n 1 32 PHE n 1 33 ILE n 1 34 PRO n 1 35 THR n 1 36 ALA n 1 37 SER n 1 38 THR n 1 39 VAL n 1 40 GLU n 1 41 GLU n 1 42 VAL n 1 43 THR n 1 44 PHE n 1 45 TYR n 1 46 VAL n 1 47 GLU n 1 48 ALA n 1 49 GLY n 1 50 LYS n 1 51 LYS n 1 52 ALA n 1 53 LEU n 1 54 GLU n 1 55 SER n 1 56 LEU n 1 57 GLY n 1 58 LEU n 1 59 LEU n 1 60 VAL n 1 61 GLU n 1 62 GLU n 1 63 LEU n 1 64 ASP n 1 65 ILE n 1 66 ALA n 1 67 THR n 1 68 GLU n 1 69 SER n 1 70 LEU n 1 71 GLY n 1 72 GLU n 1 73 ILE n 1 74 THR n 1 75 THR n 1 76 LYS n 1 77 LEU n 1 78 ARG n 1 79 LYS n 1 80 ASN n 1 81 ASP n 1 82 PHE n 1 83 ILE n 1 84 TYR n 1 85 VAL n 1 86 THR n 1 87 GLY n 1 88 GLY n 1 89 ASN n 1 90 THR n 1 91 PHE n 1 92 PHE n 1 93 LEU n 1 94 LEU n 1 95 GLN n 1 96 GLU n 1 97 LEU n 1 98 LYS n 1 99 ARG n 1 100 THR n 1 101 GLY n 1 102 ALA n 1 103 ASP n 1 104 LYS n 1 105 LEU n 1 106 ILE n 1 107 LEU n 1 108 GLU n 1 109 GLU n 1 110 ILE n 1 111 ALA n 1 112 ALA n 1 113 GLY n 1 114 LYS n 1 115 LEU n 1 116 TYR n 1 117 ILE n 1 118 GLY n 1 119 GLU n 1 120 SER n 1 121 ALA n 1 122 GLY n 1 123 ALA n 1 124 VAL n 1 125 ILE n 1 126 THR n 1 127 SER n 1 128 PRO n 1 129 ASN n 1 130 ILE n 1 131 ALA n 1 132 TYR n 1 133 ILE n 1 134 GLN n 1 135 THR n 1 136 MSE n 1 137 ASP n 1 138 SER n 1 139 THR n 1 140 LYS n 1 141 LYS n 1 142 ALA n 1 143 VAL n 1 144 ASN n 1 145 LEU n 1 146 THR n 1 147 ASN n 1 148 TYR n 1 149 ASP n 1 150 ALA n 1 151 LEU n 1 152 ASN n 1 153 LEU n 1 154 VAL n 1 155 ASP n 1 156 PHE n 1 157 SER n 1 158 THR n 1 159 LEU n 1 160 PRO n 1 161 HIS n 1 162 TYR n 1 163 ASN n 1 164 ASN n 1 165 THR n 1 166 PRO n 1 167 PHE n 1 168 LYS n 1 169 GLU n 1 170 ILE n 1 171 THR n 1 172 GLN n 1 173 LYS n 1 174 ILE n 1 175 VAL n 1 176 THR n 1 177 GLU n 1 178 TYR n 1 179 ALA n 1 180 GLY n 1 181 LYS n 1 182 SER n 1 183 GLN n 1 184 ILE n 1 185 TYR n 1 186 PRO n 1 187 ILE n 1 188 SER n 1 189 ASN n 1 190 HIS n 1 191 GLU n 1 192 ALA n 1 193 ILE n 1 194 PHE n 1 195 ILE n 1 196 ARG n 1 197 GLY n 1 198 LYS n 1 199 GLU n 1 200 VAL n 1 201 ILE n 1 202 THR n 1 203 LYS n 1 204 ARG n 1 205 LEU n 1 206 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lmo0363 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain EGD-e _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 169963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y363_LISMO _struct_ref.pdbx_db_accession P58495 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKND FIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLPH YNNTPFKEITQKIVTEYAGKSQIYPISNHEAIFIRGKEVITKRLS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L4E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 206 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P58495 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 205 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3L4E _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P58495 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3L4E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4 _exptl_crystal_grow.pdbx_details '2.5M NH4 Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'RAYONIX MX-300' 2009-11-12 Mirrors 2 CCD 'RAYONIX MX-300' 2009-12-10 Mirrors # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Si 111' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Si 111' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97857 1.0 2 0.77487 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'APS BEAMLINE 21-ID-D' APS 21-ID-D ? 0.97857 2 SYNCHROTRON 'APS BEAMLINE 21-ID-D' APS 21-ID-D ? 0.77487 # _reflns.entry_id 3L4E _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.5 _reflns.number_obs 34751 _reflns.number_all 34751 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.53 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.646 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.57 _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1689 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3L4E _refine.ls_number_reflns_obs 33512 _refine.ls_number_reflns_all 33512 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.415 _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs 96.52 _refine.ls_R_factor_obs 0.1692 _refine.ls_R_factor_all 0.1733 _refine.ls_R_factor_R_work 0.1692 _refine.ls_R_factor_R_free 0.2222 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.67 _refine.ls_number_reflns_R_free 2571 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.1387 _refine.aniso_B[2][2] 0 _refine.aniso_B[3][3] 0.2774 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] -0.1387 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 60.361 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Ansiotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.18 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1589 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 1784 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low 23.415 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1686 'X-RAY DIFFRACTION' ? f_angle_d 0.983 ? ? 2292 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.341 ? ? 615 'X-RAY DIFFRACTION' ? f_chiral_restr 0.070 ? ? 273 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 289 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.4992 1.5528 2834 0.1802 90.00 0.2488 . . 210 . . . . 'X-RAY DIFFRACTION' . 1.5528 1.6150 2909 0.1661 92.00 0.2677 . . 222 . . . . 'X-RAY DIFFRACTION' . 1.6150 1.6884 2959 0.1534 94.00 0.2389 . . 239 . . . . 'X-RAY DIFFRACTION' . 1.6884 1.7774 3017 0.1428 96.00 0.2003 . . 261 . . . . 'X-RAY DIFFRACTION' . 1.7774 1.8888 3042 0.1486 97.00 0.2282 . . 278 . . . . 'X-RAY DIFFRACTION' . 1.8888 2.0345 3090 0.1442 99.00 0.2067 . . 279 . . . . 'X-RAY DIFFRACTION' . 2.0345 2.2391 3179 0.1469 99.00 0.2075 . . 255 . . . . 'X-RAY DIFFRACTION' . 2.2391 2.5628 3202 0.1563 99.00 0.2158 . . 270 . . . . 'X-RAY DIFFRACTION' . 2.5628 3.2275 3270 0.1764 100.00 0.2336 . . 260 . . . . 'X-RAY DIFFRACTION' . 3.2275 23.4173 3439 0.1797 99.00 0.2135 . . 297 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 3L4E _struct.title '1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e' _struct.pdbx_descriptor 'Uncharacterized peptidase Lmo0363 (E.C.3.4.21.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L4E _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;hypothetical protein lmo0363, CSGID, similar to peptidase E, Hydrolase, Protease, Serine protease, Structural Genomics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, Center for Structural Genomics of Infectious Diseases ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 10 ? ASP A 13 ? SER A 9 ASP A 12 5 ? 4 HELX_P HELX_P2 2 VAL A 14 ? GLU A 22 ? VAL A 13 GLU A 21 1 ? 9 HELX_P HELX_P3 3 PRO A 34 ? GLU A 40 ? PRO A 33 GLU A 39 5 ? 7 HELX_P HELX_P4 4 THR A 43 ? LEU A 56 ? THR A 42 LEU A 55 1 ? 14 HELX_P HELX_P5 5 SER A 69 ? ASN A 80 ? SER A 68 ASN A 79 1 ? 12 HELX_P HELX_P6 6 ASN A 89 ? THR A 100 ? ASN A 88 THR A 99 1 ? 12 HELX_P HELX_P7 7 GLY A 101 ? ALA A 112 ? GLY A 100 ALA A 111 1 ? 12 HELX_P HELX_P8 8 SER A 120 ? ILE A 125 ? SER A 119 ILE A 124 1 ? 6 HELX_P HELX_P9 9 ILE A 130 ? GLN A 134 ? ILE A 129 GLN A 133 5 ? 5 HELX_P HELX_P10 10 SER A 138 ? ALA A 142 ? SER A 137 ALA A 141 5 ? 5 HELX_P HELX_P11 11 PHE A 167 ? TYR A 178 ? PHE A 166 TYR A 177 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A ALA 1 C ? ? ? 1_555 A MSE 2 N A ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? covale2 covale ? ? A ALA 1 C ? ? ? 1_555 A MSE 2 N B ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A MSE 2 C A ? ? 1_555 A LYS 3 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.328 ? covale4 covale ? ? A MSE 2 C B ? ? 1_555 A LYS 3 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale ? ? A THR 135 C ? ? ? 1_555 A MSE 136 N A ? A THR 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.336 ? covale6 covale ? ? A THR 135 C ? ? ? 1_555 A MSE 136 N B ? A THR 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale ? ? A MSE 136 C A ? ? 1_555 A ASP 137 N ? ? A MSE 135 A ASP 136 1_555 ? ? ? ? ? ? ? 1.333 ? covale8 covale ? ? A MSE 136 C B ? ? 1_555 A ASP 137 N ? ? A MSE 135 A ASP 136 1_555 ? ? ? ? ? ? ? 1.327 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 165 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 164 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 166 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 165 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.36 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 59 ? GLU A 62 ? LEU A 58 GLU A 61 A 2 THR A 29 ? ILE A 33 ? THR A 28 ILE A 32 A 3 PHE A 82 ? VAL A 85 ? PHE A 81 VAL A 84 A 4 LEU A 115 ? GLU A 119 ? LEU A 114 GLU A 118 A 5 ASN A 4 ? THR A 8 ? ASN A 3 THR A 7 A 6 GLU A 191 ? ARG A 196 ? GLU A 190 ARG A 195 A 7 GLU A 199 ? ARG A 204 ? GLU A 198 ARG A 203 B 1 SER A 157 ? LEU A 159 ? SER A 156 LEU A 158 B 2 ILE A 184 ? PRO A 186 ? ILE A 183 PRO A 185 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 61 ? O GLU A 60 N VAL A 30 ? N VAL A 29 A 2 3 N ILE A 33 ? N ILE A 32 O TYR A 84 ? O TYR A 83 A 3 4 N ILE A 83 ? N ILE A 82 O ILE A 117 ? O ILE A 116 A 4 5 O TYR A 116 ? O TYR A 115 N PHE A 6 ? N PHE A 5 A 5 6 N LEU A 5 ? N LEU A 4 O ILE A 195 ? O ILE A 194 A 6 7 N PHE A 194 ? N PHE A 193 O ILE A 201 ? O ILE A 200 B 1 2 N SER A 157 ? N SER A 156 O TYR A 185 ? O TYR A 184 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 206' AC2 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE SO4 A 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 LYS A 104 ? LYS A 103 . ? 8_566 ? 2 AC1 7 ASN A 164 ? ASN A 163 . ? 1_555 ? 3 AC1 7 SER A 188 ? SER A 187 . ? 1_555 ? 4 AC1 7 ASN A 189 ? ASN A 188 . ? 1_555 ? 5 AC1 7 HIS A 190 ? HIS A 189 . ? 1_555 ? 6 AC1 7 ARG A 204 ? ARG A 203 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 279 . ? 1_555 ? 8 AC2 7 GLU A 40 ? GLU A 39 . ? 1_555 ? 9 AC2 7 ASN A 89 ? ASN A 88 . ? 1_555 ? 10 AC2 7 MSE A 136 ? MSE A 135 . ? 1_555 ? 11 AC2 7 SER A 138 ? SER A 137 . ? 1_555 ? 12 AC2 7 LYS A 141 ? LYS A 140 . ? 1_555 ? 13 AC2 7 HOH D . ? HOH A 283 . ? 1_555 ? 14 AC2 7 HOH D . ? HOH A 359 . ? 1_555 ? # _database_PDB_matrix.entry_id 3L4E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3L4E _atom_sites.fract_transf_matrix[1][1] 0.014745 _atom_sites.fract_transf_matrix[1][2] 0.008513 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017026 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006445 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 0 ALA ALA A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 PHE 6 5 5 PHE PHE A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 PRO 16 15 15 PRO PRO A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 PHE 21 20 20 PHE PHE A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 THR 31 30 30 THR THR A . n A 1 32 PHE 32 31 31 PHE PHE A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 THR 35 34 34 THR THR A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 THR 38 37 37 THR THR A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 LYS 50 49 49 LYS LYS A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 SER 55 54 54 SER SER A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 LEU 59 58 58 LEU LEU A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 SER 69 68 68 SER SER A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 LYS 76 75 75 LYS LYS A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ARG 78 77 77 ARG ARG A . n A 1 79 LYS 79 78 78 LYS LYS A . n A 1 80 ASN 80 79 79 ASN ASN A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 PHE 82 81 81 PHE PHE A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 TYR 84 83 83 TYR TYR A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 THR 86 85 85 THR THR A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 ASN 89 88 88 ASN ASN A . n A 1 90 THR 90 89 89 THR THR A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 GLN 95 94 94 GLN GLN A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 LYS 98 97 97 LYS LYS A . n A 1 99 ARG 99 98 98 ARG ARG A . n A 1 100 THR 100 99 99 THR THR A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 LYS 104 103 103 LYS LYS A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 LYS 114 113 113 LYS LYS A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 TYR 116 115 115 TYR TYR A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 SER 120 119 119 SER SER A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 THR 126 125 125 THR THR A . n A 1 127 SER 127 126 126 SER SER A . n A 1 128 PRO 128 127 127 PRO PRO A . n A 1 129 ASN 129 128 128 ASN ASN A . n A 1 130 ILE 130 129 129 ILE ILE A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 TYR 132 131 131 TYR TYR A . n A 1 133 ILE 133 132 132 ILE ILE A . n A 1 134 GLN 134 133 133 GLN GLN A . n A 1 135 THR 135 134 134 THR THR A . n A 1 136 MSE 136 135 135 MSE MSE A . n A 1 137 ASP 137 136 136 ASP ASP A . n A 1 138 SER 138 137 137 SER SER A . n A 1 139 THR 139 138 138 THR THR A . n A 1 140 LYS 140 139 139 LYS LYS A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ALA 142 141 141 ALA ALA A . n A 1 143 VAL 143 142 142 VAL VAL A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 THR 146 145 145 THR THR A . n A 1 147 ASN 147 146 146 ASN ASN A . n A 1 148 TYR 148 147 147 TYR TYR A . n A 1 149 ASP 149 148 148 ASP ASP A . n A 1 150 ALA 150 149 149 ALA ALA A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 ASN 152 151 151 ASN ASN A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 PHE 156 155 155 PHE PHE A . n A 1 157 SER 157 156 156 SER SER A . n A 1 158 THR 158 157 157 THR THR A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 PRO 160 159 159 PRO PRO A . n A 1 161 HIS 161 160 160 HIS HIS A . n A 1 162 TYR 162 161 161 TYR TYR A . n A 1 163 ASN 163 162 162 ASN ASN A . n A 1 164 ASN 164 163 163 ASN ASN A . n A 1 165 THR 165 164 164 THR THR A . n A 1 166 PRO 166 165 165 PRO PRO A . n A 1 167 PHE 167 166 166 PHE PHE A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 GLU 169 168 168 GLU GLU A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 THR 171 170 170 THR THR A . n A 1 172 GLN 172 171 171 GLN GLN A . n A 1 173 LYS 173 172 172 LYS LYS A . n A 1 174 ILE 174 173 173 ILE ILE A . n A 1 175 VAL 175 174 174 VAL VAL A . n A 1 176 THR 176 175 175 THR THR A . n A 1 177 GLU 177 176 176 GLU GLU A . n A 1 178 TYR 178 177 177 TYR TYR A . n A 1 179 ALA 179 178 ? ? ? A . n A 1 180 GLY 180 179 ? ? ? A . n A 1 181 LYS 181 180 ? ? ? A . n A 1 182 SER 182 181 ? ? ? A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 ILE 184 183 183 ILE ILE A . n A 1 185 TYR 185 184 184 TYR TYR A . n A 1 186 PRO 186 185 185 PRO PRO A . n A 1 187 ILE 187 186 186 ILE ILE A . n A 1 188 SER 188 187 187 SER SER A . n A 1 189 ASN 189 188 188 ASN ASN A . n A 1 190 HIS 190 189 189 HIS HIS A . n A 1 191 GLU 191 190 190 GLU GLU A . n A 1 192 ALA 192 191 191 ALA ALA A . n A 1 193 ILE 193 192 192 ILE ILE A . n A 1 194 PHE 194 193 193 PHE PHE A . n A 1 195 ILE 195 194 194 ILE ILE A . n A 1 196 ARG 196 195 195 ARG ARG A . n A 1 197 GLY 197 196 196 GLY GLY A . n A 1 198 LYS 198 197 197 LYS LYS A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 ILE 201 200 200 ILE ILE A . n A 1 202 THR 202 201 201 THR THR A . n A 1 203 LYS 203 202 202 LYS LYS A . n A 1 204 ARG 204 203 203 ARG ARG A . n A 1 205 LEU 205 204 204 LEU LEU A . n A 1 206 SER 206 205 205 SER SER A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 206 206 SO4 SO4 A . C 2 SO4 1 207 207 SO4 SO4 A . D 3 HOH 1 208 208 HOH HOH A . D 3 HOH 2 209 209 HOH HOH A . D 3 HOH 3 210 210 HOH HOH A . D 3 HOH 4 211 211 HOH HOH A . D 3 HOH 5 212 212 HOH HOH A . D 3 HOH 6 213 213 HOH HOH A . D 3 HOH 7 214 214 HOH HOH A . D 3 HOH 8 215 215 HOH HOH A . D 3 HOH 9 216 216 HOH HOH A . D 3 HOH 10 217 217 HOH HOH A . D 3 HOH 11 218 218 HOH HOH A . D 3 HOH 12 219 219 HOH HOH A . D 3 HOH 13 220 220 HOH HOH A . D 3 HOH 14 221 221 HOH HOH A . D 3 HOH 15 222 222 HOH HOH A . D 3 HOH 16 223 223 HOH HOH A . D 3 HOH 17 224 224 HOH HOH A . D 3 HOH 18 225 225 HOH HOH A . D 3 HOH 19 226 226 HOH HOH A . D 3 HOH 20 227 227 HOH HOH A . D 3 HOH 21 228 228 HOH HOH A . D 3 HOH 22 229 229 HOH HOH A . D 3 HOH 23 230 230 HOH HOH A . D 3 HOH 24 231 231 HOH HOH A . D 3 HOH 25 232 232 HOH HOH A . D 3 HOH 26 233 233 HOH HOH A . D 3 HOH 27 234 234 HOH HOH A . D 3 HOH 28 235 235 HOH HOH A . D 3 HOH 29 236 236 HOH HOH A . D 3 HOH 30 237 237 HOH HOH A . D 3 HOH 31 238 238 HOH HOH A . D 3 HOH 32 239 239 HOH HOH A . D 3 HOH 33 240 240 HOH HOH A . D 3 HOH 34 241 241 HOH HOH A . D 3 HOH 35 242 242 HOH HOH A . D 3 HOH 36 243 243 HOH HOH A . D 3 HOH 37 244 244 HOH HOH A . D 3 HOH 38 245 245 HOH HOH A . D 3 HOH 39 246 246 HOH HOH A . D 3 HOH 40 247 247 HOH HOH A . D 3 HOH 41 248 248 HOH HOH A . D 3 HOH 42 249 249 HOH HOH A . D 3 HOH 43 250 250 HOH HOH A . D 3 HOH 44 251 251 HOH HOH A . D 3 HOH 45 252 252 HOH HOH A . D 3 HOH 46 253 253 HOH HOH A . D 3 HOH 47 254 254 HOH HOH A . D 3 HOH 48 255 255 HOH HOH A . D 3 HOH 49 256 256 HOH HOH A . D 3 HOH 50 257 257 HOH HOH A . D 3 HOH 51 258 258 HOH HOH A . D 3 HOH 52 259 259 HOH HOH A . D 3 HOH 53 260 260 HOH HOH A . D 3 HOH 54 261 261 HOH HOH A . D 3 HOH 55 262 262 HOH HOH A . D 3 HOH 56 263 263 HOH HOH A . D 3 HOH 57 264 264 HOH HOH A . D 3 HOH 58 265 265 HOH HOH A . D 3 HOH 59 266 266 HOH HOH A . D 3 HOH 60 267 267 HOH HOH A . D 3 HOH 61 268 268 HOH HOH A . D 3 HOH 62 269 269 HOH HOH A . D 3 HOH 63 270 270 HOH HOH A . D 3 HOH 64 271 271 HOH HOH A . D 3 HOH 65 272 272 HOH HOH A . D 3 HOH 66 273 273 HOH HOH A . D 3 HOH 67 274 274 HOH HOH A . D 3 HOH 68 275 275 HOH HOH A . D 3 HOH 69 276 276 HOH HOH A . D 3 HOH 70 277 277 HOH HOH A . D 3 HOH 71 278 278 HOH HOH A . D 3 HOH 72 279 279 HOH HOH A . D 3 HOH 73 280 280 HOH HOH A . D 3 HOH 74 281 281 HOH HOH A . D 3 HOH 75 282 282 HOH HOH A . D 3 HOH 76 283 283 HOH HOH A . D 3 HOH 77 284 284 HOH HOH A . D 3 HOH 78 285 285 HOH HOH A . D 3 HOH 79 286 286 HOH HOH A . D 3 HOH 80 287 287 HOH HOH A . D 3 HOH 81 288 288 HOH HOH A . D 3 HOH 82 289 289 HOH HOH A . D 3 HOH 83 290 290 HOH HOH A . D 3 HOH 84 291 291 HOH HOH A . D 3 HOH 85 292 292 HOH HOH A . D 3 HOH 86 293 293 HOH HOH A . D 3 HOH 87 294 294 HOH HOH A . D 3 HOH 88 295 295 HOH HOH A . D 3 HOH 89 296 296 HOH HOH A . D 3 HOH 90 297 297 HOH HOH A . D 3 HOH 91 298 298 HOH HOH A . D 3 HOH 92 299 299 HOH HOH A . D 3 HOH 93 300 300 HOH HOH A . D 3 HOH 94 301 301 HOH HOH A . D 3 HOH 95 302 302 HOH HOH A . D 3 HOH 96 303 303 HOH HOH A . D 3 HOH 97 304 304 HOH HOH A . D 3 HOH 98 305 305 HOH HOH A . D 3 HOH 99 306 306 HOH HOH A . D 3 HOH 100 307 307 HOH HOH A . D 3 HOH 101 308 308 HOH HOH A . D 3 HOH 102 309 309 HOH HOH A . D 3 HOH 103 310 310 HOH HOH A . D 3 HOH 104 311 311 HOH HOH A . D 3 HOH 105 312 312 HOH HOH A . D 3 HOH 106 313 313 HOH HOH A . D 3 HOH 107 314 314 HOH HOH A . D 3 HOH 108 315 315 HOH HOH A . D 3 HOH 109 316 316 HOH HOH A . D 3 HOH 110 317 317 HOH HOH A . D 3 HOH 111 318 318 HOH HOH A . D 3 HOH 112 319 319 HOH HOH A . D 3 HOH 113 320 320 HOH HOH A . D 3 HOH 114 321 321 HOH HOH A . D 3 HOH 115 322 322 HOH HOH A . D 3 HOH 116 323 323 HOH HOH A . D 3 HOH 117 324 324 HOH HOH A . D 3 HOH 118 325 325 HOH HOH A . D 3 HOH 119 326 326 HOH HOH A . D 3 HOH 120 327 327 HOH HOH A . D 3 HOH 121 328 328 HOH HOH A . D 3 HOH 122 329 329 HOH HOH A . D 3 HOH 123 330 330 HOH HOH A . D 3 HOH 124 331 331 HOH HOH A . D 3 HOH 125 332 332 HOH HOH A . D 3 HOH 126 333 333 HOH HOH A . D 3 HOH 127 334 334 HOH HOH A . D 3 HOH 128 335 335 HOH HOH A . D 3 HOH 129 336 336 HOH HOH A . D 3 HOH 130 337 337 HOH HOH A . D 3 HOH 131 338 338 HOH HOH A . D 3 HOH 132 339 339 HOH HOH A . D 3 HOH 133 340 340 HOH HOH A . D 3 HOH 134 341 341 HOH HOH A . D 3 HOH 135 342 342 HOH HOH A . D 3 HOH 136 343 343 HOH HOH A . D 3 HOH 137 344 344 HOH HOH A . D 3 HOH 138 345 345 HOH HOH A . D 3 HOH 139 346 346 HOH HOH A . D 3 HOH 140 347 347 HOH HOH A . D 3 HOH 141 348 348 HOH HOH A . D 3 HOH 142 349 349 HOH HOH A . D 3 HOH 143 350 350 HOH HOH A . D 3 HOH 144 351 351 HOH HOH A . D 3 HOH 145 352 352 HOH HOH A . D 3 HOH 146 353 353 HOH HOH A . D 3 HOH 147 354 354 HOH HOH A . D 3 HOH 148 355 355 HOH HOH A . D 3 HOH 149 356 356 HOH HOH A . D 3 HOH 150 357 357 HOH HOH A . D 3 HOH 151 358 358 HOH HOH A . D 3 HOH 152 359 359 HOH HOH A . D 3 HOH 153 360 360 HOH HOH A . D 3 HOH 154 361 361 HOH HOH A . D 3 HOH 155 362 362 HOH HOH A . D 3 HOH 156 363 363 HOH HOH A . D 3 HOH 157 364 364 HOH HOH A . D 3 HOH 158 365 365 HOH HOH A . D 3 HOH 159 366 366 HOH HOH A . D 3 HOH 160 367 367 HOH HOH A . D 3 HOH 161 368 368 HOH HOH A . D 3 HOH 162 369 369 HOH HOH A . D 3 HOH 163 370 370 HOH HOH A . D 3 HOH 164 371 371 HOH HOH A . D 3 HOH 165 372 372 HOH HOH A . D 3 HOH 166 373 373 HOH HOH A . D 3 HOH 167 374 374 HOH HOH A . D 3 HOH 168 375 375 HOH HOH A . D 3 HOH 169 376 376 HOH HOH A . D 3 HOH 170 377 377 HOH HOH A . D 3 HOH 171 378 378 HOH HOH A . D 3 HOH 172 379 379 HOH HOH A . D 3 HOH 173 380 380 HOH HOH A . D 3 HOH 174 381 381 HOH HOH A . D 3 HOH 175 382 382 HOH HOH A . D 3 HOH 176 383 383 HOH HOH A . D 3 HOH 177 384 384 HOH HOH A . D 3 HOH 178 385 385 HOH HOH A . D 3 HOH 179 386 386 HOH HOH A . D 3 HOH 180 387 387 HOH HOH A . D 3 HOH 181 388 388 HOH HOH A . D 3 HOH 182 389 389 HOH HOH A . D 3 HOH 183 390 390 HOH HOH A . D 3 HOH 184 391 391 HOH HOH A . D 3 HOH 185 392 392 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 136 A MSE 135 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 213 ? D HOH . 2 1 A HOH 340 ? D HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-14 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BLU-MAX 'data collection' . ? 1 PHENIX 'model building' '(phenix.autosol)' ? 2 PHENIX refinement '(phenix.refine: 1.4_115)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing ? ? 6 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 9 ? ? -161.31 95.85 2 1 SER A 119 ? A 49.68 -110.25 3 1 SER A 119 ? B 52.32 -109.07 4 1 ALA A 149 ? ? -117.27 -150.56 5 1 PRO A 165 ? ? -92.99 35.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 178 ? A ALA 179 2 1 Y 1 A GLY 179 ? A GLY 180 3 1 Y 1 A LYS 180 ? A LYS 181 4 1 Y 1 A SER 181 ? A SER 182 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #