data_3L4E # _entry.id 3L4E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 3L4E pdb_00003l4e 10.2210/pdb3l4e/pdb RCSB RCSB056818 ? ? WWPDB D_1000056818 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-07-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_entry_details 5 3 'Structure model' pdbx_modification_feature 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3L4E _pdbx_database_status.recvd_initial_deposition_date 2009-12-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id idp02527 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Brunzelle, J.S.' 1 'Onopriyenko, O.' 2 'Savchenko, A.' 3 'Anderson, W.F.' 4 'Center for Structural Genomics of Infectious Diseases (CSGID)' 5 # _citation.id primary _citation.title '1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Brunzelle, J.S.' 1 ? primary 'Onopriyenko, O.' 2 ? primary 'Savchenko, A.' 3 ? primary 'Anderson, W.F.' 4 ? primary 'Center for Structural Genomics of Infectious Diseases (CSGID)' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized peptidase Lmo0363' 22963.889 1 3.4.21.- ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 185 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;A(MSE)KNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTK LRKNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQT(MSE)DSTKKAVNLTNYDALN LVDFSTLPHYNNTPFKEITQKIVTEYAGKSQIYPISNHEAIFIRGKEVITKRLS ; _entity_poly.pdbx_seq_one_letter_code_can ;AMKNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKN DFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLP HYNNTPFKEITQKIVTEYAGKSQIYPISNHEAIFIRGKEVITKRLS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier idp02527 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 MSE n 1 3 LYS n 1 4 ASN n 1 5 LEU n 1 6 PHE n 1 7 LEU n 1 8 THR n 1 9 SER n 1 10 SER n 1 11 PHE n 1 12 LYS n 1 13 ASP n 1 14 VAL n 1 15 VAL n 1 16 PRO n 1 17 LEU n 1 18 PHE n 1 19 THR n 1 20 GLU n 1 21 PHE n 1 22 GLU n 1 23 SER n 1 24 ASN n 1 25 LEU n 1 26 GLN n 1 27 GLY n 1 28 LYS n 1 29 THR n 1 30 VAL n 1 31 THR n 1 32 PHE n 1 33 ILE n 1 34 PRO n 1 35 THR n 1 36 ALA n 1 37 SER n 1 38 THR n 1 39 VAL n 1 40 GLU n 1 41 GLU n 1 42 VAL n 1 43 THR n 1 44 PHE n 1 45 TYR n 1 46 VAL n 1 47 GLU n 1 48 ALA n 1 49 GLY n 1 50 LYS n 1 51 LYS n 1 52 ALA n 1 53 LEU n 1 54 GLU n 1 55 SER n 1 56 LEU n 1 57 GLY n 1 58 LEU n 1 59 LEU n 1 60 VAL n 1 61 GLU n 1 62 GLU n 1 63 LEU n 1 64 ASP n 1 65 ILE n 1 66 ALA n 1 67 THR n 1 68 GLU n 1 69 SER n 1 70 LEU n 1 71 GLY n 1 72 GLU n 1 73 ILE n 1 74 THR n 1 75 THR n 1 76 LYS n 1 77 LEU n 1 78 ARG n 1 79 LYS n 1 80 ASN n 1 81 ASP n 1 82 PHE n 1 83 ILE n 1 84 TYR n 1 85 VAL n 1 86 THR n 1 87 GLY n 1 88 GLY n 1 89 ASN n 1 90 THR n 1 91 PHE n 1 92 PHE n 1 93 LEU n 1 94 LEU n 1 95 GLN n 1 96 GLU n 1 97 LEU n 1 98 LYS n 1 99 ARG n 1 100 THR n 1 101 GLY n 1 102 ALA n 1 103 ASP n 1 104 LYS n 1 105 LEU n 1 106 ILE n 1 107 LEU n 1 108 GLU n 1 109 GLU n 1 110 ILE n 1 111 ALA n 1 112 ALA n 1 113 GLY n 1 114 LYS n 1 115 LEU n 1 116 TYR n 1 117 ILE n 1 118 GLY n 1 119 GLU n 1 120 SER n 1 121 ALA n 1 122 GLY n 1 123 ALA n 1 124 VAL n 1 125 ILE n 1 126 THR n 1 127 SER n 1 128 PRO n 1 129 ASN n 1 130 ILE n 1 131 ALA n 1 132 TYR n 1 133 ILE n 1 134 GLN n 1 135 THR n 1 136 MSE n 1 137 ASP n 1 138 SER n 1 139 THR n 1 140 LYS n 1 141 LYS n 1 142 ALA n 1 143 VAL n 1 144 ASN n 1 145 LEU n 1 146 THR n 1 147 ASN n 1 148 TYR n 1 149 ASP n 1 150 ALA n 1 151 LEU n 1 152 ASN n 1 153 LEU n 1 154 VAL n 1 155 ASP n 1 156 PHE n 1 157 SER n 1 158 THR n 1 159 LEU n 1 160 PRO n 1 161 HIS n 1 162 TYR n 1 163 ASN n 1 164 ASN n 1 165 THR n 1 166 PRO n 1 167 PHE n 1 168 LYS n 1 169 GLU n 1 170 ILE n 1 171 THR n 1 172 GLN n 1 173 LYS n 1 174 ILE n 1 175 VAL n 1 176 THR n 1 177 GLU n 1 178 TYR n 1 179 ALA n 1 180 GLY n 1 181 LYS n 1 182 SER n 1 183 GLN n 1 184 ILE n 1 185 TYR n 1 186 PRO n 1 187 ILE n 1 188 SER n 1 189 ASN n 1 190 HIS n 1 191 GLU n 1 192 ALA n 1 193 ILE n 1 194 PHE n 1 195 ILE n 1 196 ARG n 1 197 GLY n 1 198 LYS n 1 199 GLU n 1 200 VAL n 1 201 ILE n 1 202 THR n 1 203 LYS n 1 204 ARG n 1 205 LEU n 1 206 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene lmo0363 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain EGD-e _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Listeria monocytogenes' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 169963 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)-Magic' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG7 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 0 0 ALA ALA A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 LYS 3 2 2 LYS LYS A . n A 1 4 ASN 4 3 3 ASN ASN A . n A 1 5 LEU 5 4 4 LEU LEU A . n A 1 6 PHE 6 5 5 PHE PHE A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 THR 8 7 7 THR THR A . n A 1 9 SER 9 8 8 SER SER A . n A 1 10 SER 10 9 9 SER SER A . n A 1 11 PHE 11 10 10 PHE PHE A . n A 1 12 LYS 12 11 11 LYS LYS A . n A 1 13 ASP 13 12 12 ASP ASP A . n A 1 14 VAL 14 13 13 VAL VAL A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 PRO 16 15 15 PRO PRO A . n A 1 17 LEU 17 16 16 LEU LEU A . n A 1 18 PHE 18 17 17 PHE PHE A . n A 1 19 THR 19 18 18 THR THR A . n A 1 20 GLU 20 19 19 GLU GLU A . n A 1 21 PHE 21 20 20 PHE PHE A . n A 1 22 GLU 22 21 21 GLU GLU A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 ASN 24 23 23 ASN ASN A . n A 1 25 LEU 25 24 24 LEU LEU A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 GLY 27 26 26 GLY GLY A . n A 1 28 LYS 28 27 27 LYS LYS A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 THR 31 30 30 THR THR A . n A 1 32 PHE 32 31 31 PHE PHE A . n A 1 33 ILE 33 32 32 ILE ILE A . n A 1 34 PRO 34 33 33 PRO PRO A . n A 1 35 THR 35 34 34 THR THR A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 THR 38 37 37 THR THR A . n A 1 39 VAL 39 38 38 VAL VAL A . n A 1 40 GLU 40 39 39 GLU GLU A . n A 1 41 GLU 41 40 40 GLU GLU A . n A 1 42 VAL 42 41 41 VAL VAL A . n A 1 43 THR 43 42 42 THR THR A . n A 1 44 PHE 44 43 43 PHE PHE A . n A 1 45 TYR 45 44 44 TYR TYR A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 GLU 47 46 46 GLU GLU A . n A 1 48 ALA 48 47 47 ALA ALA A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 LYS 50 49 49 LYS LYS A . n A 1 51 LYS 51 50 50 LYS LYS A . n A 1 52 ALA 52 51 51 ALA ALA A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 GLU 54 53 53 GLU GLU A . n A 1 55 SER 55 54 54 SER SER A . n A 1 56 LEU 56 55 55 LEU LEU A . n A 1 57 GLY 57 56 56 GLY GLY A . n A 1 58 LEU 58 57 57 LEU LEU A . n A 1 59 LEU 59 58 58 LEU LEU A . n A 1 60 VAL 60 59 59 VAL VAL A . n A 1 61 GLU 61 60 60 GLU GLU A . n A 1 62 GLU 62 61 61 GLU GLU A . n A 1 63 LEU 63 62 62 LEU LEU A . n A 1 64 ASP 64 63 63 ASP ASP A . n A 1 65 ILE 65 64 64 ILE ILE A . n A 1 66 ALA 66 65 65 ALA ALA A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 GLU 68 67 67 GLU GLU A . n A 1 69 SER 69 68 68 SER SER A . n A 1 70 LEU 70 69 69 LEU LEU A . n A 1 71 GLY 71 70 70 GLY GLY A . n A 1 72 GLU 72 71 71 GLU GLU A . n A 1 73 ILE 73 72 72 ILE ILE A . n A 1 74 THR 74 73 73 THR THR A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 LYS 76 75 75 LYS LYS A . n A 1 77 LEU 77 76 76 LEU LEU A . n A 1 78 ARG 78 77 77 ARG ARG A . n A 1 79 LYS 79 78 78 LYS LYS A . n A 1 80 ASN 80 79 79 ASN ASN A . n A 1 81 ASP 81 80 80 ASP ASP A . n A 1 82 PHE 82 81 81 PHE PHE A . n A 1 83 ILE 83 82 82 ILE ILE A . n A 1 84 TYR 84 83 83 TYR TYR A . n A 1 85 VAL 85 84 84 VAL VAL A . n A 1 86 THR 86 85 85 THR THR A . n A 1 87 GLY 87 86 86 GLY GLY A . n A 1 88 GLY 88 87 87 GLY GLY A . n A 1 89 ASN 89 88 88 ASN ASN A . n A 1 90 THR 90 89 89 THR THR A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 PHE 92 91 91 PHE PHE A . n A 1 93 LEU 93 92 92 LEU LEU A . n A 1 94 LEU 94 93 93 LEU LEU A . n A 1 95 GLN 95 94 94 GLN GLN A . n A 1 96 GLU 96 95 95 GLU GLU A . n A 1 97 LEU 97 96 96 LEU LEU A . n A 1 98 LYS 98 97 97 LYS LYS A . n A 1 99 ARG 99 98 98 ARG ARG A . n A 1 100 THR 100 99 99 THR THR A . n A 1 101 GLY 101 100 100 GLY GLY A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 ASP 103 102 102 ASP ASP A . n A 1 104 LYS 104 103 103 LYS LYS A . n A 1 105 LEU 105 104 104 LEU LEU A . n A 1 106 ILE 106 105 105 ILE ILE A . n A 1 107 LEU 107 106 106 LEU LEU A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 GLU 109 108 108 GLU GLU A . n A 1 110 ILE 110 109 109 ILE ILE A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 ALA 112 111 111 ALA ALA A . n A 1 113 GLY 113 112 112 GLY GLY A . n A 1 114 LYS 114 113 113 LYS LYS A . n A 1 115 LEU 115 114 114 LEU LEU A . n A 1 116 TYR 116 115 115 TYR TYR A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 GLY 118 117 117 GLY GLY A . n A 1 119 GLU 119 118 118 GLU GLU A . n A 1 120 SER 120 119 119 SER SER A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 GLY 122 121 121 GLY GLY A . n A 1 123 ALA 123 122 122 ALA ALA A . n A 1 124 VAL 124 123 123 VAL VAL A . n A 1 125 ILE 125 124 124 ILE ILE A . n A 1 126 THR 126 125 125 THR THR A . n A 1 127 SER 127 126 126 SER SER A . n A 1 128 PRO 128 127 127 PRO PRO A . n A 1 129 ASN 129 128 128 ASN ASN A . n A 1 130 ILE 130 129 129 ILE ILE A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 TYR 132 131 131 TYR TYR A . n A 1 133 ILE 133 132 132 ILE ILE A . n A 1 134 GLN 134 133 133 GLN GLN A . n A 1 135 THR 135 134 134 THR THR A . n A 1 136 MSE 136 135 135 MSE MSE A . n A 1 137 ASP 137 136 136 ASP ASP A . n A 1 138 SER 138 137 137 SER SER A . n A 1 139 THR 139 138 138 THR THR A . n A 1 140 LYS 140 139 139 LYS LYS A . n A 1 141 LYS 141 140 140 LYS LYS A . n A 1 142 ALA 142 141 141 ALA ALA A . n A 1 143 VAL 143 142 142 VAL VAL A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 LEU 145 144 144 LEU LEU A . n A 1 146 THR 146 145 145 THR THR A . n A 1 147 ASN 147 146 146 ASN ASN A . n A 1 148 TYR 148 147 147 TYR TYR A . n A 1 149 ASP 149 148 148 ASP ASP A . n A 1 150 ALA 150 149 149 ALA ALA A . n A 1 151 LEU 151 150 150 LEU LEU A . n A 1 152 ASN 152 151 151 ASN ASN A . n A 1 153 LEU 153 152 152 LEU LEU A . n A 1 154 VAL 154 153 153 VAL VAL A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 PHE 156 155 155 PHE PHE A . n A 1 157 SER 157 156 156 SER SER A . n A 1 158 THR 158 157 157 THR THR A . n A 1 159 LEU 159 158 158 LEU LEU A . n A 1 160 PRO 160 159 159 PRO PRO A . n A 1 161 HIS 161 160 160 HIS HIS A . n A 1 162 TYR 162 161 161 TYR TYR A . n A 1 163 ASN 163 162 162 ASN ASN A . n A 1 164 ASN 164 163 163 ASN ASN A . n A 1 165 THR 165 164 164 THR THR A . n A 1 166 PRO 166 165 165 PRO PRO A . n A 1 167 PHE 167 166 166 PHE PHE A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 GLU 169 168 168 GLU GLU A . n A 1 170 ILE 170 169 169 ILE ILE A . n A 1 171 THR 171 170 170 THR THR A . n A 1 172 GLN 172 171 171 GLN GLN A . n A 1 173 LYS 173 172 172 LYS LYS A . n A 1 174 ILE 174 173 173 ILE ILE A . n A 1 175 VAL 175 174 174 VAL VAL A . n A 1 176 THR 176 175 175 THR THR A . n A 1 177 GLU 177 176 176 GLU GLU A . n A 1 178 TYR 178 177 177 TYR TYR A . n A 1 179 ALA 179 178 ? ? ? A . n A 1 180 GLY 180 179 ? ? ? A . n A 1 181 LYS 181 180 ? ? ? A . n A 1 182 SER 182 181 ? ? ? A . n A 1 183 GLN 183 182 182 GLN GLN A . n A 1 184 ILE 184 183 183 ILE ILE A . n A 1 185 TYR 185 184 184 TYR TYR A . n A 1 186 PRO 186 185 185 PRO PRO A . n A 1 187 ILE 187 186 186 ILE ILE A . n A 1 188 SER 188 187 187 SER SER A . n A 1 189 ASN 189 188 188 ASN ASN A . n A 1 190 HIS 190 189 189 HIS HIS A . n A 1 191 GLU 191 190 190 GLU GLU A . n A 1 192 ALA 192 191 191 ALA ALA A . n A 1 193 ILE 193 192 192 ILE ILE A . n A 1 194 PHE 194 193 193 PHE PHE A . n A 1 195 ILE 195 194 194 ILE ILE A . n A 1 196 ARG 196 195 195 ARG ARG A . n A 1 197 GLY 197 196 196 GLY GLY A . n A 1 198 LYS 198 197 197 LYS LYS A . n A 1 199 GLU 199 198 198 GLU GLU A . n A 1 200 VAL 200 199 199 VAL VAL A . n A 1 201 ILE 201 200 200 ILE ILE A . n A 1 202 THR 202 201 201 THR THR A . n A 1 203 LYS 203 202 202 LYS LYS A . n A 1 204 ARG 204 203 203 ARG ARG A . n A 1 205 LEU 205 204 204 LEU LEU A . n A 1 206 SER 206 205 205 SER SER A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 206 206 SO4 SO4 A . C 2 SO4 1 207 207 SO4 SO4 A . D 3 HOH 1 208 208 HOH HOH A . D 3 HOH 2 209 209 HOH HOH A . D 3 HOH 3 210 210 HOH HOH A . D 3 HOH 4 211 211 HOH HOH A . D 3 HOH 5 212 212 HOH HOH A . D 3 HOH 6 213 213 HOH HOH A . D 3 HOH 7 214 214 HOH HOH A . D 3 HOH 8 215 215 HOH HOH A . D 3 HOH 9 216 216 HOH HOH A . D 3 HOH 10 217 217 HOH HOH A . D 3 HOH 11 218 218 HOH HOH A . D 3 HOH 12 219 219 HOH HOH A . D 3 HOH 13 220 220 HOH HOH A . D 3 HOH 14 221 221 HOH HOH A . D 3 HOH 15 222 222 HOH HOH A . D 3 HOH 16 223 223 HOH HOH A . D 3 HOH 17 224 224 HOH HOH A . D 3 HOH 18 225 225 HOH HOH A . D 3 HOH 19 226 226 HOH HOH A . D 3 HOH 20 227 227 HOH HOH A . D 3 HOH 21 228 228 HOH HOH A . D 3 HOH 22 229 229 HOH HOH A . D 3 HOH 23 230 230 HOH HOH A . D 3 HOH 24 231 231 HOH HOH A . D 3 HOH 25 232 232 HOH HOH A . D 3 HOH 26 233 233 HOH HOH A . D 3 HOH 27 234 234 HOH HOH A . D 3 HOH 28 235 235 HOH HOH A . D 3 HOH 29 236 236 HOH HOH A . D 3 HOH 30 237 237 HOH HOH A . D 3 HOH 31 238 238 HOH HOH A . D 3 HOH 32 239 239 HOH HOH A . D 3 HOH 33 240 240 HOH HOH A . D 3 HOH 34 241 241 HOH HOH A . D 3 HOH 35 242 242 HOH HOH A . D 3 HOH 36 243 243 HOH HOH A . D 3 HOH 37 244 244 HOH HOH A . D 3 HOH 38 245 245 HOH HOH A . D 3 HOH 39 246 246 HOH HOH A . D 3 HOH 40 247 247 HOH HOH A . D 3 HOH 41 248 248 HOH HOH A . D 3 HOH 42 249 249 HOH HOH A . D 3 HOH 43 250 250 HOH HOH A . D 3 HOH 44 251 251 HOH HOH A . D 3 HOH 45 252 252 HOH HOH A . D 3 HOH 46 253 253 HOH HOH A . D 3 HOH 47 254 254 HOH HOH A . D 3 HOH 48 255 255 HOH HOH A . D 3 HOH 49 256 256 HOH HOH A . D 3 HOH 50 257 257 HOH HOH A . D 3 HOH 51 258 258 HOH HOH A . D 3 HOH 52 259 259 HOH HOH A . D 3 HOH 53 260 260 HOH HOH A . D 3 HOH 54 261 261 HOH HOH A . D 3 HOH 55 262 262 HOH HOH A . D 3 HOH 56 263 263 HOH HOH A . D 3 HOH 57 264 264 HOH HOH A . D 3 HOH 58 265 265 HOH HOH A . D 3 HOH 59 266 266 HOH HOH A . D 3 HOH 60 267 267 HOH HOH A . D 3 HOH 61 268 268 HOH HOH A . D 3 HOH 62 269 269 HOH HOH A . D 3 HOH 63 270 270 HOH HOH A . D 3 HOH 64 271 271 HOH HOH A . D 3 HOH 65 272 272 HOH HOH A . D 3 HOH 66 273 273 HOH HOH A . D 3 HOH 67 274 274 HOH HOH A . D 3 HOH 68 275 275 HOH HOH A . D 3 HOH 69 276 276 HOH HOH A . D 3 HOH 70 277 277 HOH HOH A . D 3 HOH 71 278 278 HOH HOH A . D 3 HOH 72 279 279 HOH HOH A . D 3 HOH 73 280 280 HOH HOH A . D 3 HOH 74 281 281 HOH HOH A . D 3 HOH 75 282 282 HOH HOH A . D 3 HOH 76 283 283 HOH HOH A . D 3 HOH 77 284 284 HOH HOH A . D 3 HOH 78 285 285 HOH HOH A . D 3 HOH 79 286 286 HOH HOH A . D 3 HOH 80 287 287 HOH HOH A . D 3 HOH 81 288 288 HOH HOH A . D 3 HOH 82 289 289 HOH HOH A . D 3 HOH 83 290 290 HOH HOH A . D 3 HOH 84 291 291 HOH HOH A . D 3 HOH 85 292 292 HOH HOH A . D 3 HOH 86 293 293 HOH HOH A . D 3 HOH 87 294 294 HOH HOH A . D 3 HOH 88 295 295 HOH HOH A . D 3 HOH 89 296 296 HOH HOH A . D 3 HOH 90 297 297 HOH HOH A . D 3 HOH 91 298 298 HOH HOH A . D 3 HOH 92 299 299 HOH HOH A . D 3 HOH 93 300 300 HOH HOH A . D 3 HOH 94 301 301 HOH HOH A . D 3 HOH 95 302 302 HOH HOH A . D 3 HOH 96 303 303 HOH HOH A . D 3 HOH 97 304 304 HOH HOH A . D 3 HOH 98 305 305 HOH HOH A . D 3 HOH 99 306 306 HOH HOH A . D 3 HOH 100 307 307 HOH HOH A . D 3 HOH 101 308 308 HOH HOH A . D 3 HOH 102 309 309 HOH HOH A . D 3 HOH 103 310 310 HOH HOH A . D 3 HOH 104 311 311 HOH HOH A . D 3 HOH 105 312 312 HOH HOH A . D 3 HOH 106 313 313 HOH HOH A . D 3 HOH 107 314 314 HOH HOH A . D 3 HOH 108 315 315 HOH HOH A . D 3 HOH 109 316 316 HOH HOH A . D 3 HOH 110 317 317 HOH HOH A . D 3 HOH 111 318 318 HOH HOH A . D 3 HOH 112 319 319 HOH HOH A . D 3 HOH 113 320 320 HOH HOH A . D 3 HOH 114 321 321 HOH HOH A . D 3 HOH 115 322 322 HOH HOH A . D 3 HOH 116 323 323 HOH HOH A . D 3 HOH 117 324 324 HOH HOH A . D 3 HOH 118 325 325 HOH HOH A . D 3 HOH 119 326 326 HOH HOH A . D 3 HOH 120 327 327 HOH HOH A . D 3 HOH 121 328 328 HOH HOH A . D 3 HOH 122 329 329 HOH HOH A . D 3 HOH 123 330 330 HOH HOH A . D 3 HOH 124 331 331 HOH HOH A . D 3 HOH 125 332 332 HOH HOH A . D 3 HOH 126 333 333 HOH HOH A . D 3 HOH 127 334 334 HOH HOH A . D 3 HOH 128 335 335 HOH HOH A . D 3 HOH 129 336 336 HOH HOH A . D 3 HOH 130 337 337 HOH HOH A . D 3 HOH 131 338 338 HOH HOH A . D 3 HOH 132 339 339 HOH HOH A . D 3 HOH 133 340 340 HOH HOH A . D 3 HOH 134 341 341 HOH HOH A . D 3 HOH 135 342 342 HOH HOH A . D 3 HOH 136 343 343 HOH HOH A . D 3 HOH 137 344 344 HOH HOH A . D 3 HOH 138 345 345 HOH HOH A . D 3 HOH 139 346 346 HOH HOH A . D 3 HOH 140 347 347 HOH HOH A . D 3 HOH 141 348 348 HOH HOH A . D 3 HOH 142 349 349 HOH HOH A . D 3 HOH 143 350 350 HOH HOH A . D 3 HOH 144 351 351 HOH HOH A . D 3 HOH 145 352 352 HOH HOH A . D 3 HOH 146 353 353 HOH HOH A . D 3 HOH 147 354 354 HOH HOH A . D 3 HOH 148 355 355 HOH HOH A . D 3 HOH 149 356 356 HOH HOH A . D 3 HOH 150 357 357 HOH HOH A . D 3 HOH 151 358 358 HOH HOH A . D 3 HOH 152 359 359 HOH HOH A . D 3 HOH 153 360 360 HOH HOH A . D 3 HOH 154 361 361 HOH HOH A . D 3 HOH 155 362 362 HOH HOH A . D 3 HOH 156 363 363 HOH HOH A . D 3 HOH 157 364 364 HOH HOH A . D 3 HOH 158 365 365 HOH HOH A . D 3 HOH 159 366 366 HOH HOH A . D 3 HOH 160 367 367 HOH HOH A . D 3 HOH 161 368 368 HOH HOH A . D 3 HOH 162 369 369 HOH HOH A . D 3 HOH 163 370 370 HOH HOH A . D 3 HOH 164 371 371 HOH HOH A . D 3 HOH 165 372 372 HOH HOH A . D 3 HOH 166 373 373 HOH HOH A . D 3 HOH 167 374 374 HOH HOH A . D 3 HOH 168 375 375 HOH HOH A . D 3 HOH 169 376 376 HOH HOH A . D 3 HOH 170 377 377 HOH HOH A . D 3 HOH 171 378 378 HOH HOH A . D 3 HOH 172 379 379 HOH HOH A . D 3 HOH 173 380 380 HOH HOH A . D 3 HOH 174 381 381 HOH HOH A . D 3 HOH 175 382 382 HOH HOH A . D 3 HOH 176 383 383 HOH HOH A . D 3 HOH 177 384 384 HOH HOH A . D 3 HOH 178 385 385 HOH HOH A . D 3 HOH 179 386 386 HOH HOH A . D 3 HOH 180 387 387 HOH HOH A . D 3 HOH 181 388 388 HOH HOH A . D 3 HOH 182 389 389 HOH HOH A . D 3 HOH 183 390 390 HOH HOH A . D 3 HOH 184 391 391 HOH HOH A . D 3 HOH 185 392 392 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BLU-MAX 'data collection' . ? 1 PHENIX 'model building' '(phenix.autosol)' ? 2 PHENIX refinement '(phenix.refine: 1.4_115)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _cell.entry_id 3L4E _cell.length_a 67.821 _cell.length_b 67.821 _cell.length_c 155.169 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3L4E _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # _exptl.entry_id 3L4E _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.24 _exptl_crystal.density_percent_sol 45.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4 _exptl_crystal_grow.pdbx_details '2.5M NH4 Sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'RAYONIX MX-300' 2009-11-12 Mirrors 2 CCD 'RAYONIX MX-300' 2009-12-10 Mirrors # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Si 111' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Si 111' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97857 1.0 2 0.77487 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'APS BEAMLINE 21-ID-D' APS 21-ID-D ? 0.97857 2 SYNCHROTRON 'APS BEAMLINE 21-ID-D' APS 21-ID-D ? 0.77487 # _reflns.entry_id 3L4E _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F -3 _reflns.d_resolution_low 30 _reflns.d_resolution_high 1.5 _reflns.number_obs 34751 _reflns.number_all 34751 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 36.4 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 9.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.53 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs 0.646 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.57 _reflns_shell.pdbx_redundancy 7.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1689 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 3L4E _refine.ls_number_reflns_obs 33512 _refine.ls_number_reflns_all 33512 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.415 _refine.ls_d_res_high 1.5 _refine.ls_percent_reflns_obs 96.52 _refine.ls_R_factor_obs 0.1692 _refine.ls_R_factor_all 0.1733 _refine.ls_R_factor_R_work 0.1692 _refine.ls_R_factor_R_free 0.2222 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 7.67 _refine.ls_number_reflns_R_free 2571 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.1387 _refine.aniso_B[2][2] 0 _refine.aniso_B[3][3] 0.2774 _refine.aniso_B[1][2] 0 _refine.aniso_B[1][3] 0 _refine.aniso_B[2][3] -0.1387 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.400 _refine.solvent_model_param_bsol 60.361 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model Ansiotropic _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.18 _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_phase_error ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1589 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 185 _refine_hist.number_atoms_total 1784 _refine_hist.d_res_high 1.5 _refine_hist.d_res_low 23.415 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.005 ? ? 1686 'X-RAY DIFFRACTION' ? f_angle_d 0.983 ? ? 2292 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 16.341 ? ? 615 'X-RAY DIFFRACTION' ? f_chiral_restr 0.070 ? ? 273 'X-RAY DIFFRACTION' ? f_plane_restr 0.005 ? ? 289 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.4992 1.5528 2834 0.1802 90.00 0.2488 . . 210 . . . . 'X-RAY DIFFRACTION' . 1.5528 1.6150 2909 0.1661 92.00 0.2677 . . 222 . . . . 'X-RAY DIFFRACTION' . 1.6150 1.6884 2959 0.1534 94.00 0.2389 . . 239 . . . . 'X-RAY DIFFRACTION' . 1.6884 1.7774 3017 0.1428 96.00 0.2003 . . 261 . . . . 'X-RAY DIFFRACTION' . 1.7774 1.8888 3042 0.1486 97.00 0.2282 . . 278 . . . . 'X-RAY DIFFRACTION' . 1.8888 2.0345 3090 0.1442 99.00 0.2067 . . 279 . . . . 'X-RAY DIFFRACTION' . 2.0345 2.2391 3179 0.1469 99.00 0.2075 . . 255 . . . . 'X-RAY DIFFRACTION' . 2.2391 2.5628 3202 0.1563 99.00 0.2158 . . 270 . . . . 'X-RAY DIFFRACTION' . 2.5628 3.2275 3270 0.1764 100.00 0.2336 . . 260 . . . . 'X-RAY DIFFRACTION' . 3.2275 23.4173 3439 0.1797 99.00 0.2135 . . 297 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 3L4E _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 3L4E _struct.title '1.5A Crystal Structure of a Putative Peptidase E Protein from Listeria monocytogenes EGD-e' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L4E _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;hypothetical protein lmo0363, CSGID, similar to peptidase E, Hydrolase, Protease, Serine protease, Structural Genomics, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, Center for Structural Genomics of Infectious Diseases ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Y363_LISMO _struct_ref.pdbx_db_accession P58495 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MKNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKND FIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLPH YNNTPFKEITQKIVTEYAGKSQIYPISNHEAIFIRGKEVITKRLS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 3L4E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 206 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P58495 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 205 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 205 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 3L4E _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P58495 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 10 ? ASP A 13 ? SER A 9 ASP A 12 5 ? 4 HELX_P HELX_P2 2 VAL A 14 ? GLU A 22 ? VAL A 13 GLU A 21 1 ? 9 HELX_P HELX_P3 3 PRO A 34 ? GLU A 40 ? PRO A 33 GLU A 39 5 ? 7 HELX_P HELX_P4 4 THR A 43 ? LEU A 56 ? THR A 42 LEU A 55 1 ? 14 HELX_P HELX_P5 5 SER A 69 ? ASN A 80 ? SER A 68 ASN A 79 1 ? 12 HELX_P HELX_P6 6 ASN A 89 ? THR A 100 ? ASN A 88 THR A 99 1 ? 12 HELX_P HELX_P7 7 GLY A 101 ? ALA A 112 ? GLY A 100 ALA A 111 1 ? 12 HELX_P HELX_P8 8 SER A 120 ? ILE A 125 ? SER A 119 ILE A 124 1 ? 6 HELX_P HELX_P9 9 ILE A 130 ? GLN A 134 ? ILE A 129 GLN A 133 5 ? 5 HELX_P HELX_P10 10 SER A 138 ? ALA A 142 ? SER A 137 ALA A 141 5 ? 5 HELX_P HELX_P11 11 PHE A 167 ? TYR A 178 ? PHE A 166 TYR A 177 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ALA 1 C ? ? ? 1_555 A MSE 2 N A ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale2 covale both ? A ALA 1 C ? ? ? 1_555 A MSE 2 N B ? A ALA 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale3 covale both ? A MSE 2 C A ? ? 1_555 A LYS 3 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.328 ? ? covale4 covale both ? A MSE 2 C B ? ? 1_555 A LYS 3 N ? ? A MSE 1 A LYS 2 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale5 covale both ? A THR 135 C ? ? ? 1_555 A MSE 136 N A ? A THR 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale both ? A THR 135 C ? ? ? 1_555 A MSE 136 N B ? A THR 134 A MSE 135 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale7 covale both ? A MSE 136 C A ? ? 1_555 A ASP 137 N ? ? A MSE 135 A ASP 136 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale8 covale both ? A MSE 136 C B ? ? 1_555 A ASP 137 N ? ? A MSE 135 A ASP 136 1_555 ? ? ? ? ? ? ? 1.327 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 MSE A 2 A . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 2 MSE A 2 B . . . . MSE A 1 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 3 MSE A 136 A . . . . MSE A 135 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' 4 MSE A 136 B . . . . MSE A 135 ? 1_555 . . . . . . . MET 1 MSE Selenomethionine 'Named protein modification' # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id THR _struct_mon_prot_cis.label_seq_id 165 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id THR _struct_mon_prot_cis.auth_seq_id 164 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 166 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 165 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.36 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 7 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel B 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 59 ? GLU A 62 ? LEU A 58 GLU A 61 A 2 THR A 29 ? ILE A 33 ? THR A 28 ILE A 32 A 3 PHE A 82 ? VAL A 85 ? PHE A 81 VAL A 84 A 4 LEU A 115 ? GLU A 119 ? LEU A 114 GLU A 118 A 5 ASN A 4 ? THR A 8 ? ASN A 3 THR A 7 A 6 GLU A 191 ? ARG A 196 ? GLU A 190 ARG A 195 A 7 GLU A 199 ? ARG A 204 ? GLU A 198 ARG A 203 B 1 SER A 157 ? LEU A 159 ? SER A 156 LEU A 158 B 2 ILE A 184 ? PRO A 186 ? ILE A 183 PRO A 185 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 61 ? O GLU A 60 N VAL A 30 ? N VAL A 29 A 2 3 N ILE A 33 ? N ILE A 32 O TYR A 84 ? O TYR A 83 A 3 4 N ILE A 83 ? N ILE A 82 O ILE A 117 ? O ILE A 116 A 4 5 O TYR A 116 ? O TYR A 115 N PHE A 6 ? N PHE A 5 A 5 6 N LEU A 5 ? N LEU A 4 O ILE A 195 ? O ILE A 194 A 6 7 N PHE A 194 ? N PHE A 193 O ILE A 201 ? O ILE A 200 B 1 2 N SER A 157 ? N SER A 156 O TYR A 185 ? O TYR A 184 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 206 ? 7 'BINDING SITE FOR RESIDUE SO4 A 206' AC2 Software A SO4 207 ? 7 'BINDING SITE FOR RESIDUE SO4 A 207' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 LYS A 104 ? LYS A 103 . ? 8_566 ? 2 AC1 7 ASN A 164 ? ASN A 163 . ? 1_555 ? 3 AC1 7 SER A 188 ? SER A 187 . ? 1_555 ? 4 AC1 7 ASN A 189 ? ASN A 188 . ? 1_555 ? 5 AC1 7 HIS A 190 ? HIS A 189 . ? 1_555 ? 6 AC1 7 ARG A 204 ? ARG A 203 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 279 . ? 1_555 ? 8 AC2 7 GLU A 40 ? GLU A 39 . ? 1_555 ? 9 AC2 7 ASN A 89 ? ASN A 88 . ? 1_555 ? 10 AC2 7 MSE A 136 ? MSE A 135 . ? 1_555 ? 11 AC2 7 SER A 138 ? SER A 137 . ? 1_555 ? 12 AC2 7 LYS A 141 ? LYS A 140 . ? 1_555 ? 13 AC2 7 HOH D . ? HOH A 283 . ? 1_555 ? 14 AC2 7 HOH D . ? HOH A 359 . ? 1_555 ? # _pdbx_entry_details.entry_id 3L4E _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 9 ? ? -161.31 95.85 2 1 SER A 119 ? A 49.68 -110.25 3 1 SER A 119 ? B 52.32 -109.07 4 1 ALA A 149 ? ? -117.27 -150.56 5 1 PRO A 165 ? ? -92.99 35.78 # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Center for Structural Genomics of Infectious Diseases' _pdbx_SG_project.initial_of_center CSGID # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 136 A MSE 135 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 213 ? D HOH . 2 1 A HOH 340 ? D HOH . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 178 ? A ALA 179 2 1 Y 1 A GLY 179 ? A GLY 180 3 1 Y 1 A LYS 180 ? A LYS 181 4 1 Y 1 A SER 181 ? A SER 182 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 ILE N N N N 147 ILE CA C N S 148 ILE C C N N 149 ILE O O N N 150 ILE CB C N S 151 ILE CG1 C N N 152 ILE CG2 C N N 153 ILE CD1 C N N 154 ILE OXT O N N 155 ILE H H N N 156 ILE H2 H N N 157 ILE HA H N N 158 ILE HB H N N 159 ILE HG12 H N N 160 ILE HG13 H N N 161 ILE HG21 H N N 162 ILE HG22 H N N 163 ILE HG23 H N N 164 ILE HD11 H N N 165 ILE HD12 H N N 166 ILE HD13 H N N 167 ILE HXT H N N 168 LEU N N N N 169 LEU CA C N S 170 LEU C C N N 171 LEU O O N N 172 LEU CB C N N 173 LEU CG C N N 174 LEU CD1 C N N 175 LEU CD2 C N N 176 LEU OXT O N N 177 LEU H H N N 178 LEU H2 H N N 179 LEU HA H N N 180 LEU HB2 H N N 181 LEU HB3 H N N 182 LEU HG H N N 183 LEU HD11 H N N 184 LEU HD12 H N N 185 LEU HD13 H N N 186 LEU HD21 H N N 187 LEU HD22 H N N 188 LEU HD23 H N N 189 LEU HXT H N N 190 LYS N N N N 191 LYS CA C N S 192 LYS C C N N 193 LYS O O N N 194 LYS CB C N N 195 LYS CG C N N 196 LYS CD C N N 197 LYS CE C N N 198 LYS NZ N N N 199 LYS OXT O N N 200 LYS H H N N 201 LYS H2 H N N 202 LYS HA H N N 203 LYS HB2 H N N 204 LYS HB3 H N N 205 LYS HG2 H N N 206 LYS HG3 H N N 207 LYS HD2 H N N 208 LYS HD3 H N N 209 LYS HE2 H N N 210 LYS HE3 H N N 211 LYS HZ1 H N N 212 LYS HZ2 H N N 213 LYS HZ3 H N N 214 LYS HXT H N N 215 MSE N N N N 216 MSE CA C N S 217 MSE C C N N 218 MSE O O N N 219 MSE OXT O N N 220 MSE CB C N N 221 MSE CG C N N 222 MSE SE SE N N 223 MSE CE C N N 224 MSE H H N N 225 MSE H2 H N N 226 MSE HA H N N 227 MSE HXT H N N 228 MSE HB2 H N N 229 MSE HB3 H N N 230 MSE HG2 H N N 231 MSE HG3 H N N 232 MSE HE1 H N N 233 MSE HE2 H N N 234 MSE HE3 H N N 235 PHE N N N N 236 PHE CA C N S 237 PHE C C N N 238 PHE O O N N 239 PHE CB C N N 240 PHE CG C Y N 241 PHE CD1 C Y N 242 PHE CD2 C Y N 243 PHE CE1 C Y N 244 PHE CE2 C Y N 245 PHE CZ C Y N 246 PHE OXT O N N 247 PHE H H N N 248 PHE H2 H N N 249 PHE HA H N N 250 PHE HB2 H N N 251 PHE HB3 H N N 252 PHE HD1 H N N 253 PHE HD2 H N N 254 PHE HE1 H N N 255 PHE HE2 H N N 256 PHE HZ H N N 257 PHE HXT H N N 258 PRO N N N N 259 PRO CA C N S 260 PRO C C N N 261 PRO O O N N 262 PRO CB C N N 263 PRO CG C N N 264 PRO CD C N N 265 PRO OXT O N N 266 PRO H H N N 267 PRO HA H N N 268 PRO HB2 H N N 269 PRO HB3 H N N 270 PRO HG2 H N N 271 PRO HG3 H N N 272 PRO HD2 H N N 273 PRO HD3 H N N 274 PRO HXT H N N 275 SER N N N N 276 SER CA C N S 277 SER C C N N 278 SER O O N N 279 SER CB C N N 280 SER OG O N N 281 SER OXT O N N 282 SER H H N N 283 SER H2 H N N 284 SER HA H N N 285 SER HB2 H N N 286 SER HB3 H N N 287 SER HG H N N 288 SER HXT H N N 289 SO4 S S N N 290 SO4 O1 O N N 291 SO4 O2 O N N 292 SO4 O3 O N N 293 SO4 O4 O N N 294 THR N N N N 295 THR CA C N S 296 THR C C N N 297 THR O O N N 298 THR CB C N R 299 THR OG1 O N N 300 THR CG2 C N N 301 THR OXT O N N 302 THR H H N N 303 THR H2 H N N 304 THR HA H N N 305 THR HB H N N 306 THR HG1 H N N 307 THR HG21 H N N 308 THR HG22 H N N 309 THR HG23 H N N 310 THR HXT H N N 311 TYR N N N N 312 TYR CA C N S 313 TYR C C N N 314 TYR O O N N 315 TYR CB C N N 316 TYR CG C Y N 317 TYR CD1 C Y N 318 TYR CD2 C Y N 319 TYR CE1 C Y N 320 TYR CE2 C Y N 321 TYR CZ C Y N 322 TYR OH O N N 323 TYR OXT O N N 324 TYR H H N N 325 TYR H2 H N N 326 TYR HA H N N 327 TYR HB2 H N N 328 TYR HB3 H N N 329 TYR HD1 H N N 330 TYR HD2 H N N 331 TYR HE1 H N N 332 TYR HE2 H N N 333 TYR HH H N N 334 TYR HXT H N N 335 VAL N N N N 336 VAL CA C N S 337 VAL C C N N 338 VAL O O N N 339 VAL CB C N N 340 VAL CG1 C N N 341 VAL CG2 C N N 342 VAL OXT O N N 343 VAL H H N N 344 VAL H2 H N N 345 VAL HA H N N 346 VAL HB H N N 347 VAL HG11 H N N 348 VAL HG12 H N N 349 VAL HG13 H N N 350 VAL HG21 H N N 351 VAL HG22 H N N 352 VAL HG23 H N N 353 VAL HXT H N N 354 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 HOH O H1 sing N N 137 HOH O H2 sing N N 138 ILE N CA sing N N 139 ILE N H sing N N 140 ILE N H2 sing N N 141 ILE CA C sing N N 142 ILE CA CB sing N N 143 ILE CA HA sing N N 144 ILE C O doub N N 145 ILE C OXT sing N N 146 ILE CB CG1 sing N N 147 ILE CB CG2 sing N N 148 ILE CB HB sing N N 149 ILE CG1 CD1 sing N N 150 ILE CG1 HG12 sing N N 151 ILE CG1 HG13 sing N N 152 ILE CG2 HG21 sing N N 153 ILE CG2 HG22 sing N N 154 ILE CG2 HG23 sing N N 155 ILE CD1 HD11 sing N N 156 ILE CD1 HD12 sing N N 157 ILE CD1 HD13 sing N N 158 ILE OXT HXT sing N N 159 LEU N CA sing N N 160 LEU N H sing N N 161 LEU N H2 sing N N 162 LEU CA C sing N N 163 LEU CA CB sing N N 164 LEU CA HA sing N N 165 LEU C O doub N N 166 LEU C OXT sing N N 167 LEU CB CG sing N N 168 LEU CB HB2 sing N N 169 LEU CB HB3 sing N N 170 LEU CG CD1 sing N N 171 LEU CG CD2 sing N N 172 LEU CG HG sing N N 173 LEU CD1 HD11 sing N N 174 LEU CD1 HD12 sing N N 175 LEU CD1 HD13 sing N N 176 LEU CD2 HD21 sing N N 177 LEU CD2 HD22 sing N N 178 LEU CD2 HD23 sing N N 179 LEU OXT HXT sing N N 180 LYS N CA sing N N 181 LYS N H sing N N 182 LYS N H2 sing N N 183 LYS CA C sing N N 184 LYS CA CB sing N N 185 LYS CA HA sing N N 186 LYS C O doub N N 187 LYS C OXT sing N N 188 LYS CB CG sing N N 189 LYS CB HB2 sing N N 190 LYS CB HB3 sing N N 191 LYS CG CD sing N N 192 LYS CG HG2 sing N N 193 LYS CG HG3 sing N N 194 LYS CD CE sing N N 195 LYS CD HD2 sing N N 196 LYS CD HD3 sing N N 197 LYS CE NZ sing N N 198 LYS CE HE2 sing N N 199 LYS CE HE3 sing N N 200 LYS NZ HZ1 sing N N 201 LYS NZ HZ2 sing N N 202 LYS NZ HZ3 sing N N 203 LYS OXT HXT sing N N 204 MSE N CA sing N N 205 MSE N H sing N N 206 MSE N H2 sing N N 207 MSE CA C sing N N 208 MSE CA CB sing N N 209 MSE CA HA sing N N 210 MSE C O doub N N 211 MSE C OXT sing N N 212 MSE OXT HXT sing N N 213 MSE CB CG sing N N 214 MSE CB HB2 sing N N 215 MSE CB HB3 sing N N 216 MSE CG SE sing N N 217 MSE CG HG2 sing N N 218 MSE CG HG3 sing N N 219 MSE SE CE sing N N 220 MSE CE HE1 sing N N 221 MSE CE HE2 sing N N 222 MSE CE HE3 sing N N 223 PHE N CA sing N N 224 PHE N H sing N N 225 PHE N H2 sing N N 226 PHE CA C sing N N 227 PHE CA CB sing N N 228 PHE CA HA sing N N 229 PHE C O doub N N 230 PHE C OXT sing N N 231 PHE CB CG sing N N 232 PHE CB HB2 sing N N 233 PHE CB HB3 sing N N 234 PHE CG CD1 doub Y N 235 PHE CG CD2 sing Y N 236 PHE CD1 CE1 sing Y N 237 PHE CD1 HD1 sing N N 238 PHE CD2 CE2 doub Y N 239 PHE CD2 HD2 sing N N 240 PHE CE1 CZ doub Y N 241 PHE CE1 HE1 sing N N 242 PHE CE2 CZ sing Y N 243 PHE CE2 HE2 sing N N 244 PHE CZ HZ sing N N 245 PHE OXT HXT sing N N 246 PRO N CA sing N N 247 PRO N CD sing N N 248 PRO N H sing N N 249 PRO CA C sing N N 250 PRO CA CB sing N N 251 PRO CA HA sing N N 252 PRO C O doub N N 253 PRO C OXT sing N N 254 PRO CB CG sing N N 255 PRO CB HB2 sing N N 256 PRO CB HB3 sing N N 257 PRO CG CD sing N N 258 PRO CG HG2 sing N N 259 PRO CG HG3 sing N N 260 PRO CD HD2 sing N N 261 PRO CD HD3 sing N N 262 PRO OXT HXT sing N N 263 SER N CA sing N N 264 SER N H sing N N 265 SER N H2 sing N N 266 SER CA C sing N N 267 SER CA CB sing N N 268 SER CA HA sing N N 269 SER C O doub N N 270 SER C OXT sing N N 271 SER CB OG sing N N 272 SER CB HB2 sing N N 273 SER CB HB3 sing N N 274 SER OG HG sing N N 275 SER OXT HXT sing N N 276 SO4 S O1 doub N N 277 SO4 S O2 doub N N 278 SO4 S O3 sing N N 279 SO4 S O4 sing N N 280 THR N CA sing N N 281 THR N H sing N N 282 THR N H2 sing N N 283 THR CA C sing N N 284 THR CA CB sing N N 285 THR CA HA sing N N 286 THR C O doub N N 287 THR C OXT sing N N 288 THR CB OG1 sing N N 289 THR CB CG2 sing N N 290 THR CB HB sing N N 291 THR OG1 HG1 sing N N 292 THR CG2 HG21 sing N N 293 THR CG2 HG22 sing N N 294 THR CG2 HG23 sing N N 295 THR OXT HXT sing N N 296 TYR N CA sing N N 297 TYR N H sing N N 298 TYR N H2 sing N N 299 TYR CA C sing N N 300 TYR CA CB sing N N 301 TYR CA HA sing N N 302 TYR C O doub N N 303 TYR C OXT sing N N 304 TYR CB CG sing N N 305 TYR CB HB2 sing N N 306 TYR CB HB3 sing N N 307 TYR CG CD1 doub Y N 308 TYR CG CD2 sing Y N 309 TYR CD1 CE1 sing Y N 310 TYR CD1 HD1 sing N N 311 TYR CD2 CE2 doub Y N 312 TYR CD2 HD2 sing N N 313 TYR CE1 CZ doub Y N 314 TYR CE1 HE1 sing N N 315 TYR CE2 CZ sing Y N 316 TYR CE2 HE2 sing N N 317 TYR CZ OH sing N N 318 TYR OH HH sing N N 319 TYR OXT HXT sing N N 320 VAL N CA sing N N 321 VAL N H sing N N 322 VAL N H2 sing N N 323 VAL CA C sing N N 324 VAL CA CB sing N N 325 VAL CA HA sing N N 326 VAL C O doub N N 327 VAL C OXT sing N N 328 VAL CB CG1 sing N N 329 VAL CB CG2 sing N N 330 VAL CB HB sing N N 331 VAL CG1 HG11 sing N N 332 VAL CG1 HG12 sing N N 333 VAL CG1 HG13 sing N N 334 VAL CG2 HG21 sing N N 335 VAL CG2 HG22 sing N N 336 VAL CG2 HG23 sing N N 337 VAL OXT HXT sing N N 338 # _atom_sites.entry_id 3L4E _atom_sites.fract_transf_matrix[1][1] 0.014745 _atom_sites.fract_transf_matrix[1][2] 0.008513 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017026 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006445 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ # loop_ #