data_3L4F # _entry.id 3L4F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.320 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 3L4F RCSB RCSB056819 WWPDB D_1000056819 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 3L4F _pdbx_database_status.recvd_initial_deposition_date 2009-12-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Im, Y.J.' 1 'Kang, G.B.' 2 'Lee, J.H.' 3 'Song, H.E.' 4 'Park, K.R.' 5 'Kim, E.' 6 'Song, W.K.' 7 'Park, D.' 8 'Eom, S.H.' 9 # _citation.id primary _citation.title 'Structural basis for asymmetric association of the betaPIX coiled coil and shank PDZ' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 397 _citation.page_first 457 _citation.page_last 466 _citation.year 2010 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20117114 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2010.01.048 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Im, Y.J.' 1 ? primary 'Kang, G.B.' 2 ? primary 'Lee, J.H.' 3 ? primary 'Park, K.R.' 4 ? primary 'Song, H.E.' 5 ? primary 'Kim, E.' 6 ? primary 'Song, W.K.' 7 ? primary 'Park, D.' 8 ? primary 'Eom, S.H.' 9 ? # _cell.entry_id 3L4F _cell.length_a 47.666 _cell.length_b 47.666 _cell.length_c 263.161 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 3L4F _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Rho guanine nucleotide exchange factor 7' 7333.420 3 ? ? 'The C-terminal coiled-coil domain' ? 2 polymer man 'SH3 and multiple ankyrin repeat domains protein 1' 14618.661 1 ? ? 'PDZ domain' ? 3 water nat water 18.015 20 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'PAK-interacting exchange factor beta, Beta-Pix' 2 ;Shank1, GKAP/SAPAP-interacting protein, SPANK-1, Synamon, Somatostatin receptor-interacting protein, SSTR-interacting protein, SSTRIP ; # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no MEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDETNL MEKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDETNL A,B,C ? 2 'polypeptide(L)' no no ;MGSSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEA ; ;MGSSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWR AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEA ; D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LYS n 1 4 SER n 1 5 LEU n 1 6 VAL n 1 7 ASP n 1 8 THR n 1 9 VAL n 1 10 TYR n 1 11 ALA n 1 12 LEU n 1 13 LYS n 1 14 ASP n 1 15 GLU n 1 16 VAL n 1 17 GLN n 1 18 GLU n 1 19 LEU n 1 20 ARG n 1 21 GLN n 1 22 ASP n 1 23 ASN n 1 24 LYS n 1 25 LYS n 1 26 MET n 1 27 LYS n 1 28 LYS n 1 29 SER n 1 30 LEU n 1 31 GLU n 1 32 GLU n 1 33 GLU n 1 34 GLN n 1 35 ARG n 1 36 ALA n 1 37 ARG n 1 38 LYS n 1 39 ASP n 1 40 LEU n 1 41 GLU n 1 42 LYS n 1 43 LEU n 1 44 VAL n 1 45 ARG n 1 46 LYS n 1 47 VAL n 1 48 LEU n 1 49 LYS n 1 50 ASN n 1 51 MET n 1 52 ASN n 1 53 ASP n 1 54 PRO n 1 55 ALA n 1 56 TRP n 1 57 ASP n 1 58 GLU n 1 59 THR n 1 60 ASN n 1 61 LEU n 2 1 MET n 2 2 GLY n 2 3 SER n 2 4 SER n 2 5 HIS n 2 6 HIS n 2 7 HIS n 2 8 HIS n 2 9 HIS n 2 10 HIS n 2 11 SER n 2 12 GLN n 2 13 ASP n 2 14 PRO n 2 15 LEU n 2 16 VAL n 2 17 PRO n 2 18 ARG n 2 19 GLY n 2 20 SER n 2 21 GLY n 2 22 SER n 2 23 ASP n 2 24 TYR n 2 25 ILE n 2 26 ILE n 2 27 LYS n 2 28 GLU n 2 29 LYS n 2 30 THR n 2 31 VAL n 2 32 LEU n 2 33 LEU n 2 34 GLN n 2 35 LYS n 2 36 LYS n 2 37 ASP n 2 38 SER n 2 39 GLU n 2 40 GLY n 2 41 PHE n 2 42 GLY n 2 43 PHE n 2 44 VAL n 2 45 LEU n 2 46 ARG n 2 47 GLY n 2 48 ALA n 2 49 LYS n 2 50 ALA n 2 51 GLN n 2 52 THR n 2 53 PRO n 2 54 ILE n 2 55 GLU n 2 56 GLU n 2 57 PHE n 2 58 THR n 2 59 PRO n 2 60 THR n 2 61 PRO n 2 62 ALA n 2 63 PHE n 2 64 PRO n 2 65 ALA n 2 66 LEU n 2 67 GLN n 2 68 TYR n 2 69 LEU n 2 70 GLU n 2 71 SER n 2 72 VAL n 2 73 ASP n 2 74 GLU n 2 75 GLY n 2 76 GLY n 2 77 VAL n 2 78 ALA n 2 79 TRP n 2 80 ARG n 2 81 ALA n 2 82 GLY n 2 83 LEU n 2 84 ARG n 2 85 MET n 2 86 GLY n 2 87 ASP n 2 88 PHE n 2 89 LEU n 2 90 ILE n 2 91 GLU n 2 92 VAL n 2 93 ASN n 2 94 GLY n 2 95 GLN n 2 96 ASN n 2 97 VAL n 2 98 VAL n 2 99 LYS n 2 100 VAL n 2 101 GLY n 2 102 HIS n 2 103 ARG n 2 104 GLN n 2 105 VAL n 2 106 VAL n 2 107 ASN n 2 108 MET n 2 109 ILE n 2 110 ARG n 2 111 GLN n 2 112 GLY n 2 113 GLY n 2 114 ASN n 2 115 THR n 2 116 LEU n 2 117 MET n 2 118 VAL n 2 119 LYS n 2 120 VAL n 2 121 VAL n 2 122 MET n 2 123 VAL n 2 124 THR n 2 125 ARG n 2 126 HIS n 2 127 PRO n 2 128 ASP n 2 129 MET n 2 130 ASP n 2 131 GLU n 2 132 ALA n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? rat ? beta1PIX ? ? ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PET-DUET1 ? ? 2 1 sample ? ? ? rat ? Shank1 ? ? ? ? ? ? 'Rattus norvegicus' 10116 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? 'BL21(DE3)' ? ? ? ? ? ? ? PLASMID ? ? ? PET-DUET1 ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP ARHG7_RAT 1 EKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMNDPAWDETNL 587 O55043 ? 2 UNP SHAN1_RAT 2 ;SGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVK VGHRQVVNMIRQGGNTLMVKVVMVTRHPDMDEA ; 653 Q9WV48 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 3L4F A 2 ? 61 ? O55043 587 ? 646 ? 587 646 2 1 3L4F B 2 ? 61 ? O55043 587 ? 646 ? 587 646 3 1 3L4F C 2 ? 61 ? O55043 587 ? 646 ? 587 646 4 2 3L4F D 20 ? 132 ? Q9WV48 653 ? 765 ? 653 765 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 3L4F MET A 1 ? UNP O55043 ? ? 'expression tag' 586 1 2 3L4F MET B 1 ? UNP O55043 ? ? 'expression tag' 586 2 3 3L4F MET C 1 ? UNP O55043 ? ? 'expression tag' 586 3 4 3L4F MET D 1 ? UNP Q9WV48 ? ? 'expression tag' 634 4 4 3L4F GLY D 2 ? UNP Q9WV48 ? ? 'expression tag' 635 5 4 3L4F SER D 3 ? UNP Q9WV48 ? ? 'expression tag' 636 6 4 3L4F SER D 4 ? UNP Q9WV48 ? ? 'expression tag' 637 7 4 3L4F HIS D 5 ? UNP Q9WV48 ? ? 'expression tag' 638 8 4 3L4F HIS D 6 ? UNP Q9WV48 ? ? 'expression tag' 639 9 4 3L4F HIS D 7 ? UNP Q9WV48 ? ? 'expression tag' 640 10 4 3L4F HIS D 8 ? UNP Q9WV48 ? ? 'expression tag' 641 11 4 3L4F HIS D 9 ? UNP Q9WV48 ? ? 'expression tag' 642 12 4 3L4F HIS D 10 ? UNP Q9WV48 ? ? 'expression tag' 643 13 4 3L4F SER D 11 ? UNP Q9WV48 ? ? 'expression tag' 644 14 4 3L4F GLN D 12 ? UNP Q9WV48 ? ? 'expression tag' 645 15 4 3L4F ASP D 13 ? UNP Q9WV48 ? ? 'expression tag' 646 16 4 3L4F PRO D 14 ? UNP Q9WV48 ? ? 'expression tag' 647 17 4 3L4F LEU D 15 ? UNP Q9WV48 ? ? 'expression tag' 648 18 4 3L4F VAL D 16 ? UNP Q9WV48 ? ? 'expression tag' 649 19 4 3L4F PRO D 17 ? UNP Q9WV48 ? ? 'expression tag' 650 20 4 3L4F ARG D 18 ? UNP Q9WV48 ? ? 'expression tag' 651 21 4 3L4F GLY D 19 ? UNP Q9WV48 ? ? 'expression tag' 652 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 3L4F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.56 _exptl_crystal.density_percent_sol 51.92 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.50 _exptl_crystal_grow.pdbx_details '15% ETHANOL, 10% ETHYLENE GLYCOL, 0.1M MES-NAOH, pH 6.50, VAPOR DIFFUSION, SITTING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100.0 ? 1 2 ? ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 210' 2006-05-25 MIRRORS 2 CCD 'ADSC QUANTUM 315' 2006-11-10 MIRRORS # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'SI 111 CHANNEL' 'SINGLE WAVELENGTH' x-ray 2 1 M 'SI 111 CHANNEL' MAD x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91993 1.0 2 0.97964 1.0 3 0.97945 1.0 4 0.96500 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'PAL/PLS BEAMLINE 4A' PAL/PLS 4A ? 0.91993 2 SYNCHROTRON 'PHOTON FACTORY BEAMLINE BL-5A' 'Photon Factory' BL-5A ? '0.97964, 0.97945, 0.96500' # _reflns.entry_id 3L4F _reflns.observed_criterion_sigma_I 3.000 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 2.800 _reflns.number_obs 8492 _reflns.number_all 8808 _reflns.percent_possible_obs 95.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.054 _reflns.pdbx_netI_over_sigmaI 36.6 _reflns.B_iso_Wilson_estimate 103.8 _reflns.pdbx_redundancy 4.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 3.00 _reflns_shell.percent_possible_all 93.4 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.361 _reflns_shell.meanI_over_sigI_obs 4.2 _reflns_shell.pdbx_redundancy 4.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 821 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1,2 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.entry_id 3L4F _refine.ls_number_reflns_obs 8492 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF 730185.470 _refine.pdbx_data_cutoff_low_absF 0.0000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 41.28 _refine.ls_d_res_high 2.80 _refine.ls_percent_reflns_obs 96.5 _refine.ls_R_factor_obs 0.272 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.272 _refine.ls_R_factor_R_free 0.307 _refine.ls_R_factor_R_free_error 0.015 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.700 _refine.ls_number_reflns_R_free 400 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 91.10 _refine.aniso_B[1][1] 6.62000 _refine.aniso_B[2][2] 6.62000 _refine.aniso_B[3][3] -13.23000 _refine.aniso_B[1][2] 16.70000 _refine.aniso_B[1][3] 0.00000 _refine.aniso_B[2][3] 0.00000 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.37 _refine.solvent_model_param_bsol 99.98 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 1Q3O _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1,2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 3L4F _refine_analyze.Luzzati_coordinate_error_obs 0.43 _refine_analyze.Luzzati_sigma_a_obs 0.41 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.51 _refine_analyze.Luzzati_sigma_a_free 0.50 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2289 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 20 _refine_hist.number_atoms_total 2309 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 41.28 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.30 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.90 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.76 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.80 _refine_ls_shell.d_res_low 2.98 _refine_ls_shell.number_reflns_R_work 1292 _refine_ls_shell.R_factor_R_work 0.4340 _refine_ls_shell.percent_reflns_obs 93.20 _refine_ls_shell.R_factor_R_free 0.4920 _refine_ls_shell.R_factor_R_free_error 0.065 _refine_ls_shell.percent_reflns_R_free 4.30 _refine_ls_shell.number_reflns_R_free 58 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_obs ? # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER_REP.TOP # _struct.entry_id 3L4F _struct.title 'Crystal Structure of betaPIX Coiled-Coil Domain and Shank PDZ Complex' _struct.pdbx_descriptor 'Rho guanine nucleotide exchange factor 7, SH3 and multiple ankyrin repeat domains protein 1' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 3L4F _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/PROTEIN BINDING' _struct_keywords.text ;COILED-COIL, PDZ, Guanine-nucleotide releasing factor, Phosphoprotein, SH3 domain, ANK repeat, Cell junction, Cell membrane, Membrane, Postsynaptic cell membrane, Synapse, SIGNALING PROTEIN-PROTEIN BINDING complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 3 ? ASP A 53 ? LYS A 588 ASP A 638 1 ? 51 HELX_P HELX_P2 2 GLU B 2 ? ASN B 52 ? GLU B 587 ASN B 637 1 ? 51 HELX_P HELX_P3 3 VAL C 6 ? ASN C 50 ? VAL C 591 ASN C 635 1 ? 45 HELX_P HELX_P4 4 GLY D 76 ? GLY D 82 ? GLY D 709 GLY D 715 5 ? 7 HELX_P HELX_P5 5 GLY D 101 ? GLY D 112 ? GLY D 734 GLY D 745 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 56 ? ASN A 60 ? TRP A 641 ASN A 645 A 2 PHE D 43 ? ALA D 48 ? PHE D 676 ALA D 681 A 3 GLN D 67 ? VAL D 72 ? GLN D 700 VAL D 705 B 1 THR D 30 ? GLN D 34 ? THR D 663 GLN D 667 B 2 THR D 115 ? VAL D 121 ? THR D 748 VAL D 754 B 3 PHE D 88 ? VAL D 92 ? PHE D 721 VAL D 725 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N THR A 59 ? N THR A 644 O LEU D 45 ? O LEU D 678 A 2 3 N VAL D 44 ? N VAL D 677 O SER D 71 ? O SER D 704 B 1 2 N LEU D 33 ? N LEU D 666 O LEU D 116 ? O LEU D 749 B 2 3 O LYS D 119 ? O LYS D 752 N GLU D 91 ? N GLU D 724 # _database_PDB_matrix.entry_id 3L4F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 3L4F _atom_sites.fract_transf_matrix[1][1] 0.020979 _atom_sites.fract_transf_matrix[1][2] 0.012112 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024225 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003800 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 586 586 MET MET A . n A 1 2 GLU 2 587 587 GLU GLU A . n A 1 3 LYS 3 588 588 LYS LYS A . n A 1 4 SER 4 589 589 SER SER A . n A 1 5 LEU 5 590 590 LEU LEU A . n A 1 6 VAL 6 591 591 VAL VAL A . n A 1 7 ASP 7 592 592 ASP ASP A . n A 1 8 THR 8 593 593 THR THR A . n A 1 9 VAL 9 594 594 VAL VAL A . n A 1 10 TYR 10 595 595 TYR TYR A . n A 1 11 ALA 11 596 596 ALA ALA A . n A 1 12 LEU 12 597 597 LEU LEU A . n A 1 13 LYS 13 598 598 LYS LYS A . n A 1 14 ASP 14 599 599 ASP ASP A . n A 1 15 GLU 15 600 600 GLU GLU A . n A 1 16 VAL 16 601 601 VAL VAL A . n A 1 17 GLN 17 602 602 GLN GLN A . n A 1 18 GLU 18 603 603 GLU GLU A . n A 1 19 LEU 19 604 604 LEU LEU A . n A 1 20 ARG 20 605 605 ARG ARG A . n A 1 21 GLN 21 606 606 GLN GLN A . n A 1 22 ASP 22 607 607 ASP ASP A . n A 1 23 ASN 23 608 608 ASN ASN A . n A 1 24 LYS 24 609 609 LYS LYS A . n A 1 25 LYS 25 610 610 LYS LYS A . n A 1 26 MET 26 611 611 MET MET A . n A 1 27 LYS 27 612 612 LYS LYS A . n A 1 28 LYS 28 613 613 LYS LYS A . n A 1 29 SER 29 614 614 SER SER A . n A 1 30 LEU 30 615 615 LEU LEU A . n A 1 31 GLU 31 616 616 GLU GLU A . n A 1 32 GLU 32 617 617 GLU GLU A . n A 1 33 GLU 33 618 618 GLU GLU A . n A 1 34 GLN 34 619 619 GLN GLN A . n A 1 35 ARG 35 620 620 ARG ARG A . n A 1 36 ALA 36 621 621 ALA ALA A . n A 1 37 ARG 37 622 622 ARG ARG A . n A 1 38 LYS 38 623 623 LYS LYS A . n A 1 39 ASP 39 624 624 ASP ASP A . n A 1 40 LEU 40 625 625 LEU LEU A . n A 1 41 GLU 41 626 626 GLU GLU A . n A 1 42 LYS 42 627 627 LYS LYS A . n A 1 43 LEU 43 628 628 LEU LEU A . n A 1 44 VAL 44 629 629 VAL VAL A . n A 1 45 ARG 45 630 630 ARG ARG A . n A 1 46 LYS 46 631 631 LYS LYS A . n A 1 47 VAL 47 632 632 VAL VAL A . n A 1 48 LEU 48 633 633 LEU LEU A . n A 1 49 LYS 49 634 634 LYS LYS A . n A 1 50 ASN 50 635 635 ASN ASN A . n A 1 51 MET 51 636 636 MET MET A . n A 1 52 ASN 52 637 637 ASN ASN A . n A 1 53 ASP 53 638 638 ASP ASP A . n A 1 54 PRO 54 639 639 PRO PRO A . n A 1 55 ALA 55 640 640 ALA ALA A . n A 1 56 TRP 56 641 641 TRP TRP A . n A 1 57 ASP 57 642 642 ASP ASP A . n A 1 58 GLU 58 643 643 GLU GLU A . n A 1 59 THR 59 644 644 THR THR A . n A 1 60 ASN 60 645 645 ASN ASN A . n A 1 61 LEU 61 646 646 LEU LEU A . n B 1 1 MET 1 586 586 MET MET B . n B 1 2 GLU 2 587 587 GLU GLU B . n B 1 3 LYS 3 588 588 LYS LYS B . n B 1 4 SER 4 589 589 SER SER B . n B 1 5 LEU 5 590 590 LEU LEU B . n B 1 6 VAL 6 591 591 VAL VAL B . n B 1 7 ASP 7 592 592 ASP ASP B . n B 1 8 THR 8 593 593 THR THR B . n B 1 9 VAL 9 594 594 VAL VAL B . n B 1 10 TYR 10 595 595 TYR TYR B . n B 1 11 ALA 11 596 596 ALA ALA B . n B 1 12 LEU 12 597 597 LEU LEU B . n B 1 13 LYS 13 598 598 LYS LYS B . n B 1 14 ASP 14 599 599 ASP ASP B . n B 1 15 GLU 15 600 600 GLU GLU B . n B 1 16 VAL 16 601 601 VAL VAL B . n B 1 17 GLN 17 602 602 GLN GLN B . n B 1 18 GLU 18 603 603 GLU GLU B . n B 1 19 LEU 19 604 604 LEU LEU B . n B 1 20 ARG 20 605 605 ARG ARG B . n B 1 21 GLN 21 606 606 GLN GLN B . n B 1 22 ASP 22 607 607 ASP ASP B . n B 1 23 ASN 23 608 608 ASN ASN B . n B 1 24 LYS 24 609 609 LYS LYS B . n B 1 25 LYS 25 610 610 LYS LYS B . n B 1 26 MET 26 611 611 MET MET B . n B 1 27 LYS 27 612 612 LYS LYS B . n B 1 28 LYS 28 613 613 LYS LYS B . n B 1 29 SER 29 614 614 SER SER B . n B 1 30 LEU 30 615 615 LEU LEU B . n B 1 31 GLU 31 616 616 GLU GLU B . n B 1 32 GLU 32 617 617 GLU GLU B . n B 1 33 GLU 33 618 618 GLU GLU B . n B 1 34 GLN 34 619 619 GLN GLN B . n B 1 35 ARG 35 620 620 ARG ARG B . n B 1 36 ALA 36 621 621 ALA ALA B . n B 1 37 ARG 37 622 622 ARG ARG B . n B 1 38 LYS 38 623 623 LYS LYS B . n B 1 39 ASP 39 624 624 ASP ASP B . n B 1 40 LEU 40 625 625 LEU LEU B . n B 1 41 GLU 41 626 626 GLU GLU B . n B 1 42 LYS 42 627 627 LYS LYS B . n B 1 43 LEU 43 628 628 LEU LEU B . n B 1 44 VAL 44 629 629 VAL VAL B . n B 1 45 ARG 45 630 630 ARG ARG B . n B 1 46 LYS 46 631 631 LYS LYS B . n B 1 47 VAL 47 632 632 VAL VAL B . n B 1 48 LEU 48 633 633 LEU LEU B . n B 1 49 LYS 49 634 634 LYS LYS B . n B 1 50 ASN 50 635 635 ASN ASN B . n B 1 51 MET 51 636 636 MET MET B . n B 1 52 ASN 52 637 637 ASN ASN B . n B 1 53 ASP 53 638 638 ASP ASP B . n B 1 54 PRO 54 639 639 PRO PRO B . n B 1 55 ALA 55 640 640 ALA ALA B . n B 1 56 TRP 56 641 641 TRP TRP B . n B 1 57 ASP 57 642 642 ASP ASP B . n B 1 58 GLU 58 643 643 GLU GLU B . n B 1 59 THR 59 644 644 THR THR B . n B 1 60 ASN 60 645 645 ASN ASN B . n B 1 61 LEU 61 646 646 LEU LEU B . n C 1 1 MET 1 586 586 MET MET C . n C 1 2 GLU 2 587 587 GLU GLU C . n C 1 3 LYS 3 588 588 LYS LYS C . n C 1 4 SER 4 589 589 SER SER C . n C 1 5 LEU 5 590 590 LEU LEU C . n C 1 6 VAL 6 591 591 VAL VAL C . n C 1 7 ASP 7 592 592 ASP ASP C . n C 1 8 THR 8 593 593 THR THR C . n C 1 9 VAL 9 594 594 VAL VAL C . n C 1 10 TYR 10 595 595 TYR TYR C . n C 1 11 ALA 11 596 596 ALA ALA C . n C 1 12 LEU 12 597 597 LEU LEU C . n C 1 13 LYS 13 598 598 LYS LYS C . n C 1 14 ASP 14 599 599 ASP ASP C . n C 1 15 GLU 15 600 600 GLU GLU C . n C 1 16 VAL 16 601 601 VAL VAL C . n C 1 17 GLN 17 602 602 GLN GLN C . n C 1 18 GLU 18 603 603 GLU GLU C . n C 1 19 LEU 19 604 604 LEU LEU C . n C 1 20 ARG 20 605 605 ARG ARG C . n C 1 21 GLN 21 606 606 GLN GLN C . n C 1 22 ASP 22 607 607 ASP ASP C . n C 1 23 ASN 23 608 608 ASN ASN C . n C 1 24 LYS 24 609 609 LYS LYS C . n C 1 25 LYS 25 610 610 LYS LYS C . n C 1 26 MET 26 611 611 MET MET C . n C 1 27 LYS 27 612 612 LYS LYS C . n C 1 28 LYS 28 613 613 LYS LYS C . n C 1 29 SER 29 614 614 SER SER C . n C 1 30 LEU 30 615 615 LEU LEU C . n C 1 31 GLU 31 616 616 GLU GLU C . n C 1 32 GLU 32 617 617 GLU GLU C . n C 1 33 GLU 33 618 618 GLU GLU C . n C 1 34 GLN 34 619 619 GLN GLN C . n C 1 35 ARG 35 620 620 ARG ARG C . n C 1 36 ALA 36 621 621 ALA ALA C . n C 1 37 ARG 37 622 622 ARG ARG C . n C 1 38 LYS 38 623 623 LYS LYS C . n C 1 39 ASP 39 624 624 ASP ASP C . n C 1 40 LEU 40 625 625 LEU LEU C . n C 1 41 GLU 41 626 626 GLU GLU C . n C 1 42 LYS 42 627 627 LYS LYS C . n C 1 43 LEU 43 628 628 LEU LEU C . n C 1 44 VAL 44 629 629 VAL VAL C . n C 1 45 ARG 45 630 630 ARG ARG C . n C 1 46 LYS 46 631 631 LYS LYS C . n C 1 47 VAL 47 632 632 VAL VAL C . n C 1 48 LEU 48 633 633 LEU LEU C . n C 1 49 LYS 49 634 634 LYS LYS C . n C 1 50 ASN 50 635 635 ASN ASN C . n C 1 51 MET 51 636 636 MET MET C . n C 1 52 ASN 52 637 637 ASN ASN C . n C 1 53 ASP 53 638 638 ASP ASP C . n C 1 54 PRO 54 639 ? ? ? C . n C 1 55 ALA 55 640 ? ? ? C . n C 1 56 TRP 56 641 ? ? ? C . n C 1 57 ASP 57 642 ? ? ? C . n C 1 58 GLU 58 643 ? ? ? C . n C 1 59 THR 59 644 ? ? ? C . n C 1 60 ASN 60 645 ? ? ? C . n C 1 61 LEU 61 646 ? ? ? C . n D 2 1 MET 1 634 ? ? ? D . n D 2 2 GLY 2 635 ? ? ? D . n D 2 3 SER 3 636 ? ? ? D . n D 2 4 SER 4 637 ? ? ? D . n D 2 5 HIS 5 638 ? ? ? D . n D 2 6 HIS 6 639 ? ? ? D . n D 2 7 HIS 7 640 ? ? ? D . n D 2 8 HIS 8 641 ? ? ? D . n D 2 9 HIS 9 642 ? ? ? D . n D 2 10 HIS 10 643 ? ? ? D . n D 2 11 SER 11 644 ? ? ? D . n D 2 12 GLN 12 645 ? ? ? D . n D 2 13 ASP 13 646 ? ? ? D . n D 2 14 PRO 14 647 ? ? ? D . n D 2 15 LEU 15 648 ? ? ? D . n D 2 16 VAL 16 649 ? ? ? D . n D 2 17 PRO 17 650 ? ? ? D . n D 2 18 ARG 18 651 ? ? ? D . n D 2 19 GLY 19 652 652 GLY GLY D . n D 2 20 SER 20 653 653 SER SER D . n D 2 21 GLY 21 654 654 GLY GLY D . n D 2 22 SER 22 655 655 SER SER D . n D 2 23 ASP 23 656 656 ASP ASP D . n D 2 24 TYR 24 657 657 TYR TYR D . n D 2 25 ILE 25 658 658 ILE ILE D . n D 2 26 ILE 26 659 659 ILE ILE D . n D 2 27 LYS 27 660 660 LYS LYS D . n D 2 28 GLU 28 661 661 GLU GLU D . n D 2 29 LYS 29 662 662 LYS LYS D . n D 2 30 THR 30 663 663 THR THR D . n D 2 31 VAL 31 664 664 VAL VAL D . n D 2 32 LEU 32 665 665 LEU LEU D . n D 2 33 LEU 33 666 666 LEU LEU D . n D 2 34 GLN 34 667 667 GLN GLN D . n D 2 35 LYS 35 668 668 LYS LYS D . n D 2 36 LYS 36 669 669 LYS LYS D . n D 2 37 ASP 37 670 670 ASP ASP D . n D 2 38 SER 38 671 671 SER SER D . n D 2 39 GLU 39 672 672 GLU GLU D . n D 2 40 GLY 40 673 673 GLY GLY D . n D 2 41 PHE 41 674 674 PHE PHE D . n D 2 42 GLY 42 675 675 GLY GLY D . n D 2 43 PHE 43 676 676 PHE PHE D . n D 2 44 VAL 44 677 677 VAL VAL D . n D 2 45 LEU 45 678 678 LEU LEU D . n D 2 46 ARG 46 679 679 ARG ARG D . n D 2 47 GLY 47 680 680 GLY GLY D . n D 2 48 ALA 48 681 681 ALA ALA D . n D 2 49 LYS 49 682 682 LYS LYS D . n D 2 50 ALA 50 683 683 ALA ALA D . n D 2 51 GLN 51 684 684 GLN GLN D . n D 2 52 THR 52 685 685 THR THR D . n D 2 53 PRO 53 686 686 PRO PRO D . n D 2 54 ILE 54 687 687 ILE ILE D . n D 2 55 GLU 55 688 688 GLU GLU D . n D 2 56 GLU 56 689 689 GLU GLU D . n D 2 57 PHE 57 690 690 PHE PHE D . n D 2 58 THR 58 691 691 THR THR D . n D 2 59 PRO 59 692 692 PRO PRO D . n D 2 60 THR 60 693 693 THR THR D . n D 2 61 PRO 61 694 694 PRO PRO D . n D 2 62 ALA 62 695 695 ALA ALA D . n D 2 63 PHE 63 696 696 PHE PHE D . n D 2 64 PRO 64 697 697 PRO PRO D . n D 2 65 ALA 65 698 698 ALA ALA D . n D 2 66 LEU 66 699 699 LEU LEU D . n D 2 67 GLN 67 700 700 GLN GLN D . n D 2 68 TYR 68 701 701 TYR TYR D . n D 2 69 LEU 69 702 702 LEU LEU D . n D 2 70 GLU 70 703 703 GLU GLU D . n D 2 71 SER 71 704 704 SER SER D . n D 2 72 VAL 72 705 705 VAL VAL D . n D 2 73 ASP 73 706 706 ASP ASP D . n D 2 74 GLU 74 707 707 GLU GLU D . n D 2 75 GLY 75 708 708 GLY GLY D . n D 2 76 GLY 76 709 709 GLY GLY D . n D 2 77 VAL 77 710 710 VAL VAL D . n D 2 78 ALA 78 711 711 ALA ALA D . n D 2 79 TRP 79 712 712 TRP TRP D . n D 2 80 ARG 80 713 713 ARG ARG D . n D 2 81 ALA 81 714 714 ALA ALA D . n D 2 82 GLY 82 715 715 GLY GLY D . n D 2 83 LEU 83 716 716 LEU LEU D . n D 2 84 ARG 84 717 717 ARG ARG D . n D 2 85 MET 85 718 718 MET MET D . n D 2 86 GLY 86 719 719 GLY GLY D . n D 2 87 ASP 87 720 720 ASP ASP D . n D 2 88 PHE 88 721 721 PHE PHE D . n D 2 89 LEU 89 722 722 LEU LEU D . n D 2 90 ILE 90 723 723 ILE ILE D . n D 2 91 GLU 91 724 724 GLU GLU D . n D 2 92 VAL 92 725 725 VAL VAL D . n D 2 93 ASN 93 726 726 ASN ASN D . n D 2 94 GLY 94 727 727 GLY GLY D . n D 2 95 GLN 95 728 728 GLN GLN D . n D 2 96 ASN 96 729 729 ASN ASN D . n D 2 97 VAL 97 730 730 VAL VAL D . n D 2 98 VAL 98 731 731 VAL VAL D . n D 2 99 LYS 99 732 732 LYS LYS D . n D 2 100 VAL 100 733 733 VAL VAL D . n D 2 101 GLY 101 734 734 GLY GLY D . n D 2 102 HIS 102 735 735 HIS HIS D . n D 2 103 ARG 103 736 736 ARG ARG D . n D 2 104 GLN 104 737 737 GLN GLN D . n D 2 105 VAL 105 738 738 VAL VAL D . n D 2 106 VAL 106 739 739 VAL VAL D . n D 2 107 ASN 107 740 740 ASN ASN D . n D 2 108 MET 108 741 741 MET MET D . n D 2 109 ILE 109 742 742 ILE ILE D . n D 2 110 ARG 110 743 743 ARG ARG D . n D 2 111 GLN 111 744 744 GLN GLN D . n D 2 112 GLY 112 745 745 GLY GLY D . n D 2 113 GLY 113 746 746 GLY GLY D . n D 2 114 ASN 114 747 747 ASN ASN D . n D 2 115 THR 115 748 748 THR THR D . n D 2 116 LEU 116 749 749 LEU LEU D . n D 2 117 MET 117 750 750 MET MET D . n D 2 118 VAL 118 751 751 VAL VAL D . n D 2 119 LYS 119 752 752 LYS LYS D . n D 2 120 VAL 120 753 753 VAL VAL D . n D 2 121 VAL 121 754 754 VAL VAL D . n D 2 122 MET 122 755 755 MET MET D . n D 2 123 VAL 123 756 756 VAL VAL D . n D 2 124 THR 124 757 757 THR THR D . n D 2 125 ARG 125 758 758 ARG ARG D . n D 2 126 HIS 126 759 ? ? ? D . n D 2 127 PRO 127 760 ? ? ? D . n D 2 128 ASP 128 761 ? ? ? D . n D 2 129 MET 129 762 ? ? ? D . n D 2 130 ASP 130 763 ? ? ? D . n D 2 131 GLU 131 764 ? ? ? D . n D 2 132 ALA 132 765 ? ? ? D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HOH 1 9 9 HOH HOH A . E 3 HOH 2 10 10 HOH HOH A . E 3 HOH 3 19 19 HOH HOH A . F 3 HOH 1 1 1 HOH HOH B . F 3 HOH 2 2 2 HOH HOH B . F 3 HOH 3 8 8 HOH HOH B . F 3 HOH 4 11 11 HOH HOH B . F 3 HOH 5 13 13 HOH HOH B . F 3 HOH 6 15 15 HOH HOH B . F 3 HOH 7 16 16 HOH HOH B . G 3 HOH 1 5 5 HOH HOH C . G 3 HOH 2 14 14 HOH HOH C . H 3 HOH 1 3 3 HOH HOH D . H 3 HOH 2 4 4 HOH HOH D . H 3 HOH 3 6 6 HOH HOH D . H 3 HOH 4 7 7 HOH HOH D . H 3 HOH 5 12 12 HOH HOH D . H 3 HOH 6 17 17 HOH HOH D . H 3 HOH 7 18 18 HOH HOH D . H 3 HOH 8 20 20 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 7400 ? 1 MORE -63 ? 1 'SSA (A^2)' 18220 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-02-16 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-02-26 4 'Structure model' 1 3 2019-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' reflns_shell 2 4 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_reflns_shell.pdbx_Rsym_value' 2 4 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SOLVE phasing . ? 1 CNS refinement 1.1 ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 C _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 638 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 N _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 PRO _pdbx_validate_rmsd_angle.auth_seq_id_2 639 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CA _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 PRO _pdbx_validate_rmsd_angle.auth_seq_id_3 639 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 132.09 _pdbx_validate_rmsd_angle.angle_target_value 119.30 _pdbx_validate_rmsd_angle.angle_deviation 12.79 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.50 _pdbx_validate_rmsd_angle.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 587 ? ? -179.99 12.30 2 1 ASN A 637 ? ? -78.63 -73.18 3 1 ALA A 640 ? ? 79.72 -21.45 4 1 GLU B 587 ? ? -129.92 -54.30 5 1 VAL B 632 ? ? -43.34 -72.85 6 1 MET B 636 ? ? -61.11 -91.06 7 1 ASP B 638 ? ? 82.81 68.17 8 1 ASP B 642 ? ? 71.54 -151.30 9 1 GLU B 643 ? ? 5.63 112.26 10 1 SER C 589 ? ? 63.26 -154.52 11 1 VAL C 591 ? ? 64.42 -60.90 12 1 VAL C 632 ? ? -77.14 46.94 13 1 LEU C 633 ? ? -137.68 -52.42 14 1 ASN C 635 ? ? -76.64 -88.80 15 1 MET C 636 ? ? 43.94 -85.34 16 1 ASN C 637 ? ? -151.01 70.70 17 1 SER D 655 ? ? 162.66 108.69 18 1 ILE D 659 ? ? -29.54 86.51 19 1 LYS D 660 ? ? -81.63 -154.26 20 1 GLU D 661 ? ? 175.67 52.04 21 1 GLU D 672 ? ? -174.95 -175.72 22 1 ALA D 683 ? ? -170.08 -130.21 23 1 GLN D 684 ? ? 82.45 -44.42 24 1 THR D 685 ? ? -141.30 59.83 25 1 PRO D 692 ? ? -65.86 39.35 26 1 PRO D 694 ? ? -64.20 31.52 27 1 VAL D 710 ? ? -39.42 -71.48 28 1 ALA D 714 ? ? -144.44 30.58 29 1 ASN D 726 ? ? 76.45 -77.35 30 1 GLN D 728 ? ? -37.05 129.35 31 1 ARG D 736 ? ? -52.19 -8.99 32 1 MET D 741 ? ? -56.56 -73.50 33 1 ILE D 742 ? ? -28.24 -41.38 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 C PRO 639 ? C PRO 54 2 1 Y 1 C ALA 640 ? C ALA 55 3 1 Y 1 C TRP 641 ? C TRP 56 4 1 Y 1 C ASP 642 ? C ASP 57 5 1 Y 1 C GLU 643 ? C GLU 58 6 1 Y 1 C THR 644 ? C THR 59 7 1 Y 1 C ASN 645 ? C ASN 60 8 1 Y 1 C LEU 646 ? C LEU 61 9 1 Y 1 D MET 634 ? D MET 1 10 1 Y 1 D GLY 635 ? D GLY 2 11 1 Y 1 D SER 636 ? D SER 3 12 1 Y 1 D SER 637 ? D SER 4 13 1 Y 1 D HIS 638 ? D HIS 5 14 1 Y 1 D HIS 639 ? D HIS 6 15 1 Y 1 D HIS 640 ? D HIS 7 16 1 Y 1 D HIS 641 ? D HIS 8 17 1 Y 1 D HIS 642 ? D HIS 9 18 1 Y 1 D HIS 643 ? D HIS 10 19 1 Y 1 D SER 644 ? D SER 11 20 1 Y 1 D GLN 645 ? D GLN 12 21 1 Y 1 D ASP 646 ? D ASP 13 22 1 Y 1 D PRO 647 ? D PRO 14 23 1 Y 1 D LEU 648 ? D LEU 15 24 1 Y 1 D VAL 649 ? D VAL 16 25 1 Y 1 D PRO 650 ? D PRO 17 26 1 Y 1 D ARG 651 ? D ARG 18 27 1 Y 1 D HIS 759 ? D HIS 126 28 1 Y 1 D PRO 760 ? D PRO 127 29 1 Y 1 D ASP 761 ? D ASP 128 30 1 Y 1 D MET 762 ? D MET 129 31 1 Y 1 D ASP 763 ? D ASP 130 32 1 Y 1 D GLU 764 ? D GLU 131 33 1 Y 1 D ALA 765 ? D ALA 132 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #