HEADER HYDROLASE 21-DEC-09 3L57 TITLE CRYSTAL STRUCTURE OF THE PLASMID PCU1 TRAI RELAXASE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOBILIZATION PROTEIN TRAI; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RELAXASE DOMAIN; COMPND 5 SYNONYM: TRAI; COMPND 6 EC: 3.6.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PMUR050_047, TRAI; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTYB2 KEYWDS TRWC SUPERFAMILY OF RELAXASE ENZYMES, CONJUGATIVE RELAXASE, MOB CLASS KEYWDS 2 RELAXASE, CONJUGAL NICKASE, HYDROLASE, HISTIDINE TRIAD, HUH+H MOTIF EXPDTA X-RAY DIFFRACTION AUTHOR M.R.REDINBO,R.P.NASH REVDAT 3 06-SEP-23 3L57 1 REMARK LINK REVDAT 2 06-OCT-10 3L57 1 JRNL REVDAT 1 19-MAY-10 3L57 0 JRNL AUTH R.P.NASH,S.HABIBI,Y.CHENG,S.A.LUJAN,M.R.REDINBO JRNL TITL THE MECHANISM AND CONTROL OF DNA TRANSFER BY THE CONJUGATIVE JRNL TITL 2 RELAXASE OF RESISTANCE PLASMID PCU1. JRNL REF NUCLEIC ACIDS RES. V. 38 5929 2010 JRNL REFN ISSN 0305-1048 JRNL PMID 20448025 JRNL DOI 10.1093/NAR/GKQ303 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 22077 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.5020 - 4.5850 0.98 2719 144 0.1750 0.2010 REMARK 3 2 4.5850 - 3.6400 0.97 2641 139 0.1400 0.1980 REMARK 3 3 3.6400 - 3.1800 0.98 2656 140 0.1640 0.2400 REMARK 3 4 3.1800 - 2.8890 0.98 2645 139 0.1730 0.2450 REMARK 3 5 2.8890 - 2.6820 0.97 2622 138 0.1850 0.2180 REMARK 3 6 2.6820 - 2.5240 0.97 2598 137 0.2040 0.2920 REMARK 3 7 2.5240 - 2.3980 0.97 2592 136 0.2080 0.2680 REMARK 3 8 2.3980 - 2.2930 0.93 2499 132 0.2030 0.2440 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 65.39 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.20000 REMARK 3 B22 (A**2) : -7.78000 REMARK 3 B33 (A**2) : 7.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.49500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3493 REMARK 3 ANGLE : 0.724 4688 REMARK 3 CHIRALITY : 0.048 527 REMARK 3 PLANARITY : 0.002 604 REMARK 3 DIHEDRAL : 15.686 1276 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 36.0064 32.0627 25.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.2631 T22: 0.2865 REMARK 3 T33: 0.2820 T12: -0.0586 REMARK 3 T13: -0.0202 T23: 0.0247 REMARK 3 L TENSOR REMARK 3 L11: 1.4207 L22: 1.4745 REMARK 3 L33: 1.4275 L12: -0.2921 REMARK 3 L13: -0.3605 L23: 0.3136 REMARK 3 S TENSOR REMARK 3 S11: -0.0539 S12: 0.1393 S13: -0.1612 REMARK 3 S21: -0.0543 S22: 0.0030 S23: 0.0494 REMARK 3 S31: 0.1138 S32: 0.0289 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L57 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056847. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : FEB-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK MONOCHROMATOR REMARK 200 HIGH-RESOLUTION DOUBLE-CRYSTAL REMARK 200 SI(220) REMARK 200 OPTICS : ROSENBAUM-ROCK VERTICAL FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22081 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 49.999 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05400 REMARK 200 FOR THE DATA SET : 18.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.40100 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.2 REMARK 200 STARTING MODEL: PDB ENTRY 1OMH, PLASMID R388 TRWC RELAXASE DOMAIN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250MM TRINA CITRATE, 22% PEG 3350, 5MM REMARK 280 MGCL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 29.26000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 154 REMARK 465 LEU A 155 REMARK 465 ASP A 226 REMARK 465 GLU A 227 REMARK 465 GLN A 228 REMARK 465 ILE A 229 REMARK 465 ARG A 230 REMARK 465 ALA A 231 REMARK 465 PHE A 232 REMARK 465 SER A 233 REMARK 465 ARG A 234 REMARK 465 ARG A 235 REMARK 465 SER A 236 REMARK 465 GLU A 237 REMARK 465 GLN A 238 REMARK 465 ILE A 239 REMARK 465 GLU A 240 REMARK 465 LYS A 241 REMARK 465 GLY A 242 REMARK 465 LEU A 243 REMARK 465 ALA A 244 REMARK 465 ALA A 245 REMARK 465 MET A 246 REMARK 465 GLY A 247 REMARK 465 LEU A 248 REMARK 465 THR A 249 REMARK 465 ARG A 250 REMARK 465 GLU A 251 REMARK 465 THR A 252 REMARK 465 ALA A 253 REMARK 465 ASP A 254 REMARK 465 ALA A 255 REMARK 465 GLN A 256 REMARK 465 THR A 257 REMARK 465 LYS A 258 REMARK 465 SER A 259 REMARK 465 ARG A 260 REMARK 465 VAL A 261 REMARK 465 SER A 262 REMARK 465 MET A 263 REMARK 465 ALA A 264 REMARK 465 THR A 265 REMARK 465 ARG A 266 REMARK 465 GLU A 267 REMARK 465 LYS A 268 REMARK 465 LYS A 269 REMARK 465 THR A 270 REMARK 465 GLU A 271 REMARK 465 HIS A 272 REMARK 465 SER A 273 REMARK 465 ARG A 274 REMARK 465 GLU A 275 REMARK 465 GLU A 276 REMARK 465 ILE A 277 REMARK 465 HIS A 278 REMARK 465 GLN A 279 REMARK 465 GLU A 280 REMARK 465 TRP A 281 REMARK 465 ALA A 282 REMARK 465 SER A 283 REMARK 465 ARG A 284 REMARK 465 ALA A 285 REMARK 465 LYS A 286 REMARK 465 THR A 287 REMARK 465 LEU A 288 REMARK 465 GLY A 289 REMARK 465 ILE A 290 REMARK 465 ASP A 291 REMARK 465 PHE A 292 REMARK 465 ASP A 293 REMARK 465 ASN A 294 REMARK 465 ARG A 295 REMARK 465 GLU A 296 REMARK 465 TRP A 297 REMARK 465 GLN A 298 REMARK 465 GLY A 299 REMARK 465 TYR B 18 REMARK 465 TYR B 19 REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 ALA B 22 REMARK 465 LYS B 23 REMARK 465 ASP B 24 REMARK 465 ASP B 25 REMARK 465 TYR B 26 REMARK 465 TYR B 27 REMARK 465 SER B 28 REMARK 465 LYS B 29 REMARK 465 ASP B 30 REMARK 465 SER B 31 REMARK 465 SER B 32 REMARK 465 VAL B 73 REMARK 465 GLY B 74 REMARK 465 ASP B 75 REMARK 465 ALA B 76 REMARK 465 ALA B 154 REMARK 465 PHE B 224 REMARK 465 SER B 225 REMARK 465 ASP B 226 REMARK 465 GLU B 227 REMARK 465 GLN B 228 REMARK 465 ILE B 229 REMARK 465 ARG B 230 REMARK 465 ALA B 231 REMARK 465 PHE B 232 REMARK 465 SER B 233 REMARK 465 ARG B 234 REMARK 465 ARG B 235 REMARK 465 SER B 236 REMARK 465 GLU B 237 REMARK 465 GLN B 238 REMARK 465 ILE B 239 REMARK 465 GLU B 240 REMARK 465 LYS B 241 REMARK 465 GLY B 242 REMARK 465 LEU B 243 REMARK 465 ALA B 244 REMARK 465 ALA B 245 REMARK 465 MET B 246 REMARK 465 GLY B 247 REMARK 465 LEU B 248 REMARK 465 THR B 249 REMARK 465 ARG B 250 REMARK 465 GLU B 251 REMARK 465 THR B 252 REMARK 465 ALA B 253 REMARK 465 ASP B 254 REMARK 465 ALA B 255 REMARK 465 GLN B 256 REMARK 465 THR B 257 REMARK 465 LYS B 258 REMARK 465 SER B 259 REMARK 465 ARG B 260 REMARK 465 VAL B 261 REMARK 465 SER B 262 REMARK 465 MET B 263 REMARK 465 ALA B 264 REMARK 465 THR B 265 REMARK 465 ARG B 266 REMARK 465 GLU B 267 REMARK 465 LYS B 268 REMARK 465 LYS B 269 REMARK 465 THR B 270 REMARK 465 GLU B 271 REMARK 465 HIS B 272 REMARK 465 SER B 273 REMARK 465 ARG B 274 REMARK 465 GLU B 275 REMARK 465 GLU B 276 REMARK 465 ILE B 277 REMARK 465 HIS B 278 REMARK 465 GLN B 279 REMARK 465 GLU B 280 REMARK 465 TRP B 281 REMARK 465 ALA B 282 REMARK 465 SER B 283 REMARK 465 ARG B 284 REMARK 465 ALA B 285 REMARK 465 LYS B 286 REMARK 465 THR B 287 REMARK 465 LEU B 288 REMARK 465 GLY B 289 REMARK 465 ILE B 290 REMARK 465 ASP B 291 REMARK 465 PHE B 292 REMARK 465 ASP B 293 REMARK 465 ASN B 294 REMARK 465 ARG B 295 REMARK 465 GLU B 296 REMARK 465 TRP B 297 REMARK 465 GLN B 298 REMARK 465 GLY B 299 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 HIS A 72 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 73 CG1 CG2 REMARK 470 ASP A 75 CG OD1 OD2 REMARK 470 THR A 129 OG1 CG2 REMARK 470 ARG A 130 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 131 CG CD OE1 NE2 REMARK 470 LYS A 133 CG CD CE NZ REMARK 470 SER A 152 OG REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 PHE A 224 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 225 OG REMARK 470 GLN B 10 CG CD OE1 NE2 REMARK 470 VAL B 12 CG1 CG2 REMARK 470 VAL B 16 CG1 CG2 REMARK 470 GLU B 51 CG CD OE1 OE2 REMARK 470 LYS B 56 CG CD CE NZ REMARK 470 GLU B 62 CG CD OE1 OE2 REMARK 470 ILE B 63 CG1 CG2 CD1 REMARK 470 THR B 65 OG1 CG2 REMARK 470 PHE B 66 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR B 67 OG1 CG2 REMARK 470 HIS B 68 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B 72 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 77 CG CD CE NZ REMARK 470 MET B 95 CG SD CE REMARK 470 LYS B 133 CG CD CE NZ REMARK 470 THR B 151 OG1 CG2 REMARK 470 SER B 152 OG REMARK 470 ARG B 153 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 155 CG CD1 CD2 REMARK 470 ASP B 156 CG OD1 OD2 REMARK 470 GLN B 175 CG CD OE1 NE2 REMARK 470 SER B 214 OG REMARK 470 HIS B 223 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 30 38.32 74.56 REMARK 500 ARG A 130 -74.10 -64.75 REMARK 500 HIS A 223 63.19 69.40 REMARK 500 PHE A 224 154.36 172.63 REMARK 500 VAL B 12 25.79 -69.66 REMARK 500 SER B 14 -120.07 -64.71 REMARK 500 LYS B 78 49.10 -168.38 REMARK 500 THR B 151 90.13 -59.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 A 300 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 149 ND1 REMARK 620 2 HIS A 160 NE2 109.1 REMARK 620 3 HIS A 162 NE2 93.9 102.5 REMARK 620 4 CIT A 321 O5 95.1 91.5 159.9 REMARK 620 5 CIT A 321 O7 158.6 91.4 87.3 77.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN3 B 300 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 149 ND1 REMARK 620 2 HIS B 160 NE2 107.9 REMARK 620 3 HIS B 162 NE2 98.6 108.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN3 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 318 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 319 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 320 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 321 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN3 B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 307 DBREF 3L57 A 1 299 UNP Q9X4G2 Q9X4G2_ECOLX 1 299 DBREF 3L57 B 1 299 UNP Q9X4G2 Q9X4G2_ECOLX 1 299 SEQRES 1 A 299 MET LEU ASP ILE THR THR ILE THR ARG GLN ASN VAL THR SEQRES 2 A 299 SER VAL VAL GLY TYR TYR SER ASP ALA LYS ASP ASP TYR SEQRES 3 A 299 TYR SER LYS ASP SER SER PHE THR SER TRP GLN GLY THR SEQRES 4 A 299 GLY ALA GLU ALA LEU GLY LEU SER GLY ASP VAL GLU SER SEQRES 5 A 299 ALA ARG PHE LYS GLU LEU LEU VAL GLY GLU ILE ASP THR SEQRES 6 A 299 PHE THR HIS MET GLN ARG HIS VAL GLY ASP ALA LYS LYS SEQRES 7 A 299 GLU ARG LEU GLY TYR ASP LEU THR PHE SER ALA PRO LYS SEQRES 8 A 299 GLY VAL SER MET GLN ALA LEU ILE HIS GLY ASP LYS THR SEQRES 9 A 299 ILE ILE GLU ALA HIS GLU LYS ALA VAL ALA ALA ALA VAL SEQRES 10 A 299 ARG GLU ALA GLU LYS LEU ALA GLN ALA ARG THR THR ARG SEQRES 11 A 299 GLN GLY LYS SER VAL THR GLN ASN THR ASN ASN LEU VAL SEQRES 12 A 299 VAL ALA THR PHE ARG HIS GLU THR SER ARG ALA LEU ASP SEQRES 13 A 299 PRO ASP LEU HIS THR HIS ALA PHE VAL MET ASN MET THR SEQRES 14 A 299 GLN ARG GLU ASP GLY GLN TRP ARG ALA LEU LYS ASN ASP SEQRES 15 A 299 GLU LEU MET ARG ASN LYS MET HIS LEU GLY ASP VAL TYR SEQRES 16 A 299 LYS GLN GLU LEU ALA LEU GLU LEU THR LYS ALA GLY TYR SEQRES 17 A 299 GLU LEU ARG TYR ASN SER LYS ASN ASN THR PHE ASP MET SEQRES 18 A 299 ALA HIS PHE SER ASP GLU GLN ILE ARG ALA PHE SER ARG SEQRES 19 A 299 ARG SER GLU GLN ILE GLU LYS GLY LEU ALA ALA MET GLY SEQRES 20 A 299 LEU THR ARG GLU THR ALA ASP ALA GLN THR LYS SER ARG SEQRES 21 A 299 VAL SER MET ALA THR ARG GLU LYS LYS THR GLU HIS SER SEQRES 22 A 299 ARG GLU GLU ILE HIS GLN GLU TRP ALA SER ARG ALA LYS SEQRES 23 A 299 THR LEU GLY ILE ASP PHE ASP ASN ARG GLU TRP GLN GLY SEQRES 1 B 299 MET LEU ASP ILE THR THR ILE THR ARG GLN ASN VAL THR SEQRES 2 B 299 SER VAL VAL GLY TYR TYR SER ASP ALA LYS ASP ASP TYR SEQRES 3 B 299 TYR SER LYS ASP SER SER PHE THR SER TRP GLN GLY THR SEQRES 4 B 299 GLY ALA GLU ALA LEU GLY LEU SER GLY ASP VAL GLU SER SEQRES 5 B 299 ALA ARG PHE LYS GLU LEU LEU VAL GLY GLU ILE ASP THR SEQRES 6 B 299 PHE THR HIS MET GLN ARG HIS VAL GLY ASP ALA LYS LYS SEQRES 7 B 299 GLU ARG LEU GLY TYR ASP LEU THR PHE SER ALA PRO LYS SEQRES 8 B 299 GLY VAL SER MET GLN ALA LEU ILE HIS GLY ASP LYS THR SEQRES 9 B 299 ILE ILE GLU ALA HIS GLU LYS ALA VAL ALA ALA ALA VAL SEQRES 10 B 299 ARG GLU ALA GLU LYS LEU ALA GLN ALA ARG THR THR ARG SEQRES 11 B 299 GLN GLY LYS SER VAL THR GLN ASN THR ASN ASN LEU VAL SEQRES 12 B 299 VAL ALA THR PHE ARG HIS GLU THR SER ARG ALA LEU ASP SEQRES 13 B 299 PRO ASP LEU HIS THR HIS ALA PHE VAL MET ASN MET THR SEQRES 14 B 299 GLN ARG GLU ASP GLY GLN TRP ARG ALA LEU LYS ASN ASP SEQRES 15 B 299 GLU LEU MET ARG ASN LYS MET HIS LEU GLY ASP VAL TYR SEQRES 16 B 299 LYS GLN GLU LEU ALA LEU GLU LEU THR LYS ALA GLY TYR SEQRES 17 B 299 GLU LEU ARG TYR ASN SER LYS ASN ASN THR PHE ASP MET SEQRES 18 B 299 ALA HIS PHE SER ASP GLU GLN ILE ARG ALA PHE SER ARG SEQRES 19 B 299 ARG SER GLU GLN ILE GLU LYS GLY LEU ALA ALA MET GLY SEQRES 20 B 299 LEU THR ARG GLU THR ALA ASP ALA GLN THR LYS SER ARG SEQRES 21 B 299 VAL SER MET ALA THR ARG GLU LYS LYS THR GLU HIS SER SEQRES 22 B 299 ARG GLU GLU ILE HIS GLN GLU TRP ALA SER ARG ALA LYS SEQRES 23 B 299 THR LEU GLY ILE ASP PHE ASP ASN ARG GLU TRP GLN GLY HET MN3 A 300 1 HET EDO A 301 4 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET EDO A 310 4 HET EDO A 311 4 HET EDO A 312 4 HET EDO A 313 4 HET EDO A 314 4 HET EDO A 315 4 HET EDO A 316 4 HET EDO A 317 4 HET EDO A 318 4 HET EDO A 319 4 HET PO4 A 320 5 HET CIT A 321 13 HET MN3 B 300 1 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 4 HETNAM MN3 MANGANESE (III) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM CIT CITRIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MN3 2(MN 3+) FORMUL 4 EDO 26(C2 H6 O2) FORMUL 23 PO4 O4 P 3- FORMUL 24 CIT C6 H8 O7 FORMUL 33 HOH *219(H2 O) HELIX 1 1 ASN A 11 VAL A 15 5 5 HELIX 2 2 GLY A 38 LEU A 44 1 7 HELIX 3 3 GLU A 51 VAL A 60 1 10 HELIX 4 4 ASP A 75 LYS A 78 5 4 HELIX 5 5 PRO A 90 ILE A 99 1 10 HELIX 6 6 ASP A 102 LYS A 122 1 21 HELIX 7 7 ASN A 181 ARG A 186 1 6 HELIX 8 8 ASN A 187 GLY A 207 1 21 HELIX 9 9 GLY B 38 LEU B 44 1 7 HELIX 10 10 GLU B 51 GLY B 61 1 11 HELIX 11 11 PRO B 90 ILE B 99 1 10 HELIX 12 12 ASP B 102 LYS B 122 1 21 HELIX 13 13 ASN B 181 ASN B 187 1 7 HELIX 14 14 ASN B 187 ALA B 206 1 20 SHEET 1 A 5 LEU A 2 THR A 8 0 SHEET 2 A 5 ARG A 80 SER A 88 -1 O LEU A 81 N ILE A 7 SHEET 3 A 5 ASP A 158 MET A 166 -1 O VAL A 165 N TYR A 83 SHEET 4 A 5 VAL A 144 THR A 151 -1 N ALA A 145 O PHE A 164 SHEET 5 A 5 THR A 34 GLN A 37 -1 N GLN A 37 O VAL A 144 SHEET 1 B 2 GLU A 62 ASP A 64 0 SHEET 2 B 2 THR A 67 HIS A 68 -1 O THR A 67 N ASP A 64 SHEET 1 C 2 GLN A 125 THR A 129 0 SHEET 2 C 2 SER A 134 ASN A 138 -1 O GLN A 137 N ALA A 126 SHEET 1 D 2 THR A 169 GLN A 170 0 SHEET 2 D 2 TRP A 176 ARG A 177 -1 O ARG A 177 N THR A 169 SHEET 1 E 2 LEU A 210 ASN A 213 0 SHEET 2 E 2 THR A 218 MET A 221 -1 O ASP A 220 N ARG A 211 SHEET 1 F 5 LEU B 2 THR B 8 0 SHEET 2 F 5 ARG B 80 SER B 88 -1 O LEU B 81 N ILE B 7 SHEET 3 F 5 HIS B 160 MET B 166 -1 O VAL B 165 N TYR B 83 SHEET 4 F 5 VAL B 144 HIS B 149 -1 N PHE B 147 O HIS B 162 SHEET 5 F 5 THR B 34 GLN B 37 -1 N GLN B 37 O VAL B 144 SHEET 1 G 2 GLN B 125 ARG B 130 0 SHEET 2 G 2 LYS B 133 ASN B 138 -1 O VAL B 135 N THR B 128 SHEET 1 H 2 THR B 169 GLN B 170 0 SHEET 2 H 2 TRP B 176 ARG B 177 -1 O ARG B 177 N THR B 169 SHEET 1 I 2 LEU B 210 ASN B 213 0 SHEET 2 I 2 THR B 218 MET B 221 -1 O ASP B 220 N ARG B 211 LINK ND1 HIS A 149 MN MN3 A 300 1555 1555 2.17 LINK NE2 HIS A 160 MN MN3 A 300 1555 1555 2.15 LINK NE2 HIS A 162 MN MN3 A 300 1555 1555 2.10 LINK MN MN3 A 300 O5 CIT A 321 1555 1555 2.16 LINK MN MN3 A 300 O7 CIT A 321 1555 1555 2.23 LINK ND1 HIS B 149 MN MN3 B 300 1555 1555 2.17 LINK NE2 HIS B 160 MN MN3 B 300 1555 1555 2.36 LINK NE2 HIS B 162 MN MN3 B 300 1555 1555 2.29 SITE 1 AC1 4 HIS A 149 HIS A 160 HIS A 162 CIT A 321 SITE 1 AC2 5 ARG A 9 GLN A 10 ASN A 11 VAL A 12 SITE 2 AC2 5 THR A 13 SITE 1 AC3 5 SER A 35 TRP A 36 SER A 47 GLY A 48 SITE 2 AC3 5 HOH A 341 SITE 1 AC4 4 SER A 28 PHE A 33 THR A 34 ARG A 148 SITE 1 AC5 5 ASP A 24 SER A 52 EDO A 310 HOH A 323 SITE 2 AC5 5 HOH A 428 SITE 1 AC6 5 THR A 104 GLU A 107 ALA A 108 LYS A 111 SITE 2 AC6 5 GLU A 202 SITE 1 AC7 3 HOH A 462 THR B 104 GLU B 107 SITE 1 AC8 5 GLN A 125 LYS A 180 ASP A 182 GLU A 183 SITE 2 AC8 5 ARG A 186 SITE 1 AC9 2 ALA A 115 ARG A 118 SITE 1 BC1 5 SER A 20 SER A 52 ALA A 53 LYS A 56 SITE 2 BC1 5 EDO A 304 SITE 1 BC2 3 LEU A 210 TYR A 212 EDO A 317 SITE 1 BC3 2 VAL A 60 HOH A 464 SITE 1 BC4 5 ARG A 54 GLU A 57 ILE A 63 ASP A 64 SITE 2 BC4 5 HOH A 326 SITE 1 BC5 2 HOH A 454 HOH B 352 SITE 1 BC6 9 ARG A 186 ASN A 187 LYS A 188 MET A 189 SITE 2 BC6 9 HIS A 190 HOH A 368 HOH A 374 GLN B 197 SITE 3 BC6 9 LEU B 201 SITE 1 BC7 6 THR A 204 TYR A 208 GLU A 209 LEU A 210 SITE 2 BC7 6 TYR A 212 EDO A 311 SITE 1 BC8 6 TYR A 212 ASN A 213 ASN A 217 THR A 218 SITE 2 BC8 6 LYS B 188 MET B 189 SITE 1 BC9 4 HIS A 149 GLU A 150 THR A 151 GLN B 131 SITE 1 CC1 2 ARG A 171 ARG A 177 SITE 1 CC2 10 HIS A 149 HIS A 160 HIS A 162 MN3 A 300 SITE 2 CC2 10 HOH A 357 HOH A 392 HOH A 410 THR B 129 SITE 3 CC2 10 GLN B 131 GLY B 132 SITE 1 CC3 4 HIS B 149 HIS B 160 HIS B 162 HOH B 355 SITE 1 CC4 1 ARG B 118 SITE 1 CC5 7 TYR A 212 MET B 185 ARG B 186 ASN B 187 SITE 2 CC5 7 LYS B 188 MET B 189 EDO B 304 SITE 1 CC6 6 HOH A 462 HOH A 474 LYS B 103 ILE B 106 SITE 2 CC6 6 GLU B 107 ARG B 148 SITE 1 CC7 10 GLN A 197 ALA A 200 LEU A 201 ARG B 186 SITE 2 CC7 10 ASN B 187 MET B 189 HIS B 190 EDO B 302 SITE 3 CC7 10 HOH B 328 HOH B 358 SITE 1 CC8 6 LYS A 215 MET B 1 SER B 88 ALA B 89 SITE 2 CC8 6 PRO B 90 HOH B 365 SITE 1 CC9 5 THR B 128 GLN B 137 ARG B 171 GLU B 172 SITE 2 CC9 5 ASP B 173 SITE 1 DC1 5 VAL B 15 VAL B 16 PHE B 147 HIS B 149 SITE 2 DC1 5 PHE B 164 CRYST1 50.280 58.520 87.120 90.00 83.88 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019889 0.000000 -0.002131 0.00000 SCALE2 0.000000 0.017088 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011544 0.00000