HEADER IMMUNE SYSTEM 22-DEC-09 3L5I TITLE CRYSTAL STRUCTURE OF FNIII DOMAINS OF HUMAN GP130 (DOMAINS 4-6) COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-6 RECEPTOR SUBUNIT BETA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 323-612; COMPND 5 SYNONYM: IL-6R-BETA, INTERLEUKIN-6 SIGNAL TRANSDUCER, MEMBRANE COMPND 6 GLYCOPROTEIN 130, GP130, CDW130, ONCOSTATIN-M RECEPTOR SUBUNIT ALPHA; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GP130, IL6ST; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-DUET KEYWDS CYTOKINE RECEPTOR, FIBRONECTIN TYPE III DOMAIN, CELL MEMBRANE, KEYWDS 2 DISULFIDE BOND, IMMUNOGLOBULIN DOMAIN, MEMBRANE, RECEPTOR, SECRETED, KEYWDS 3 TRANSMEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.J.KERSHAW,J.-G.ZHANG,T.P.J.GARRETT,P.E.CZABOTAR REVDAT 4 20-NOV-24 3L5I 1 REMARK LINK REVDAT 3 01-NOV-17 3L5I 1 REMARK REVDAT 2 05-APR-17 3L5I 1 JRNL VERSN REVDAT 1 12-MAY-10 3L5I 0 JRNL AUTH Y.XU,N.J.KERSHAW,C.S.LUO,P.SOO,M.J.POCOCK,P.E.CZABOTAR, JRNL AUTH 2 D.J.HILTON,N.A.NICOLA,T.P.GARRETT,J.G.ZHANG JRNL TITL CRYSTAL STRUCTURE OF THE ENTIRE ECTODOMAIN OF GP130: JRNL TITL 2 INSIGHTS INTO THE MOLECULAR ASSEMBLY OF THE TALL CYTOKINE JRNL TITL 3 RECEPTOR COMPLEXES. JRNL REF J.BIOL.CHEM. V. 285 21214 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20489211 JRNL DOI 10.1074/JBC.C110.129502 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2132 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.7610 - 4.6830 1.00 1811 156 0.1850 0.2050 REMARK 3 2 4.6830 - 3.7180 1.00 1721 148 0.1680 0.1860 REMARK 3 3 3.7180 - 3.2490 1.00 1710 147 0.1730 0.2180 REMARK 3 4 3.2490 - 2.9520 1.00 1676 140 0.1720 0.2190 REMARK 3 5 2.9520 - 2.7400 1.00 1677 145 0.1830 0.2360 REMARK 3 6 2.7400 - 2.5790 1.00 1676 147 0.1760 0.2490 REMARK 3 7 2.5790 - 2.4500 1.00 1649 137 0.1790 0.2220 REMARK 3 8 2.4500 - 2.3430 1.00 1667 143 0.1800 0.2300 REMARK 3 9 2.3430 - 2.2530 1.00 1655 136 0.1800 0.2310 REMARK 3 10 2.2530 - 2.1750 1.00 1664 146 0.1710 0.2410 REMARK 3 11 2.1750 - 2.1070 1.00 1653 138 0.1670 0.2350 REMARK 3 12 2.1070 - 2.0470 1.00 1647 144 0.1630 0.2320 REMARK 3 13 2.0470 - 1.9930 1.00 1642 138 0.1790 0.2550 REMARK 3 14 1.9930 - 1.9440 0.98 1625 143 0.1910 0.2520 REMARK 3 15 1.9440 - 1.9000 0.95 1554 124 0.2000 0.2230 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 50.32 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.91000 REMARK 3 B22 (A**2) : -6.51300 REMARK 3 B33 (A**2) : -0.39700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2386 REMARK 3 ANGLE : 0.972 3235 REMARK 3 CHIRALITY : 0.066 367 REMARK 3 PLANARITY : 0.004 411 REMARK 3 DIHEDRAL : 15.901 837 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 304:395) REMARK 3 ORIGIN FOR THE GROUP (A): 17.3755 61.8369 65.5941 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.1396 REMARK 3 T33: 0.1328 T12: 0.0105 REMARK 3 T13: -0.0285 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.4193 L22: 2.5869 REMARK 3 L33: 1.4735 L12: 0.4932 REMARK 3 L13: -0.3240 L23: -0.1365 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.0601 S13: -0.1098 REMARK 3 S21: -0.0058 S22: 0.0478 S23: -0.0571 REMARK 3 S31: -0.0349 S32: -0.0204 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 405:494) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7521 41.9320 62.0380 REMARK 3 T TENSOR REMARK 3 T11: 0.1368 T22: 0.1552 REMARK 3 T33: 0.1393 T12: -0.0019 REMARK 3 T13: -0.0089 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 1.5586 L22: 2.8516 REMARK 3 L33: 1.0893 L12: 1.2621 REMARK 3 L13: 0.8700 L23: 1.5077 REMARK 3 S TENSOR REMARK 3 S11: 0.0602 S12: -0.0612 S13: -0.0554 REMARK 3 S21: 0.0884 S22: -0.0188 S23: -0.1083 REMARK 3 S31: 0.1399 S32: -0.0527 S33: 0.0001 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 497:590) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8507 16.0470 36.5243 REMARK 3 T TENSOR REMARK 3 T11: 0.2033 T22: 0.1646 REMARK 3 T33: 0.1430 T12: 0.0030 REMARK 3 T13: -0.0254 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 0.8602 L22: 1.0468 REMARK 3 L33: 1.6560 L12: -0.6137 REMARK 3 L13: -1.1591 L23: 0.7861 REMARK 3 S TENSOR REMARK 3 S11: 0.0401 S12: -0.0792 S13: 0.0348 REMARK 3 S21: 0.0587 S22: 0.0848 S23: -0.1524 REMARK 3 S31: 0.0363 S32: 0.1033 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L5I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056858. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798, 0.9537 REMARK 200 MONOCHROMATOR : UNDULATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27278 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHENIX AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, NACL, TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.78250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.59250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.67350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.59250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.78250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.67350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 306 CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 LYS A 340 CG CD CE NZ REMARK 470 TRP A 351 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 351 CZ3 CH2 REMARK 470 LYS A 352 CG CD CE NZ REMARK 470 SER A 353 OG REMARK 470 HIS A 354 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A 383 CD1 CD2 REMARK 470 LYS A 409 CD CE NZ REMARK 470 LYS A 413 NZ REMARK 470 SER A 427 OG REMARK 470 LYS A 429 CE NZ REMARK 470 LYS A 441 CG CD CE NZ REMARK 470 LYS A 489 NZ REMARK 470 LYS A 506 CE NZ REMARK 470 LYS A 507 NZ REMARK 470 LYS A 510 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 361 69.30 -115.82 REMARK 500 ALA A 362 -179.82 178.19 REMARK 500 ARG A 461 53.18 -90.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 4 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 7 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 11 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 13 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 591 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 14 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 592 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 593 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 17 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3L5H RELATED DB: PDB REMARK 900 RELATED ID: 3L5J RELATED DB: PDB DBREF 3L5I A 301 590 UNP P40189 IL6RB_HUMAN 323 612 SEQRES 1 A 290 GLU ASP ARG PRO SER LYS ALA PRO SER PHE TRP TYR LYS SEQRES 2 A 290 ILE ASP PRO SER HIS THR GLN GLY TYR ARG THR VAL GLN SEQRES 3 A 290 LEU VAL TRP LYS THR LEU PRO PRO PHE GLU ALA ASN GLY SEQRES 4 A 290 LYS ILE LEU ASP TYR GLU VAL THR LEU THR ARG TRP LYS SEQRES 5 A 290 SER HIS LEU GLN ASN TYR THR VAL ASN ALA THR LYS LEU SEQRES 6 A 290 THR VAL ASN LEU THR ASN ASP ARG TYR LEU ALA THR LEU SEQRES 7 A 290 THR VAL ARG ASN LEU VAL GLY LYS SER ASP ALA ALA VAL SEQRES 8 A 290 LEU THR ILE PRO ALA CYS ASP PHE GLN ALA THR HIS PRO SEQRES 9 A 290 VAL MSE ASP LEU LYS ALA PHE PRO LYS ASP ASN MSE LEU SEQRES 10 A 290 TRP VAL GLU TRP THR THR PRO ARG GLU SER VAL LYS LYS SEQRES 11 A 290 TYR ILE LEU GLU TRP CYS VAL LEU SER ASP LYS ALA PRO SEQRES 12 A 290 CYS ILE THR ASP TRP GLN GLN GLU ASP GLY THR VAL HIS SEQRES 13 A 290 ARG THR TYR LEU ARG GLY ASN LEU ALA GLU SER LYS CYS SEQRES 14 A 290 TYR LEU ILE THR VAL THR PRO VAL TYR ALA ASP GLY PRO SEQRES 15 A 290 GLY SER PRO GLU SER ILE LYS ALA TYR LEU LYS GLN ALA SEQRES 16 A 290 PRO PRO SER LYS GLY PRO THR VAL ARG THR LYS LYS VAL SEQRES 17 A 290 GLY LYS ASN GLU ALA VAL LEU GLU TRP ASP GLN LEU PRO SEQRES 18 A 290 VAL ASP VAL GLN ASN GLY PHE ILE ARG ASN TYR THR ILE SEQRES 19 A 290 PHE TYR ARG THR ILE ILE GLY ASN GLU THR ALA VAL ASN SEQRES 20 A 290 VAL ASP SER SER HIS THR GLU TYR THR LEU SER SER LEU SEQRES 21 A 290 THR SER ASP THR LEU TYR MSE VAL ARG MSE ALA ALA TYR SEQRES 22 A 290 THR ASP GLU GLY GLY LYS ASP GLY PRO GLU PHE THR PHE SEQRES 23 A 290 THR THR PRO LYS MODRES 3L5I MSE A 406 MET SELENOMETHIONINE MODRES 3L5I MSE A 416 MET SELENOMETHIONINE MODRES 3L5I MSE A 567 MET SELENOMETHIONINE MODRES 3L5I MSE A 570 MET SELENOMETHIONINE HET MSE A 406 8 HET MSE A 416 8 HET MSE A 567 8 HET MSE A 570 8 HET EDO A 1 4 HET EDO A 2 4 HET EDO A 3 4 HET EDO A 4 4 HET EDO A 5 4 HET EDO A 6 4 HET EDO A 7 4 HET EDO A 8 4 HET EDO A 9 4 HET EDO A 10 4 HET EDO A 11 4 HET EDO A 12 4 HET EDO A 13 4 HET CL A 591 1 HET EDO A 14 4 HET CL A 592 1 HET EDO A 15 4 HET EDO A 16 4 HET CL A 593 1 HET EDO A 17 4 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 EDO 17(C2 H6 O2) FORMUL 15 CL 3(CL 1-) FORMUL 22 HOH *204(H2 O) HELIX 1 1 PRO A 333 ASN A 338 1 6 HELIX 2 2 PRO A 521 ASN A 526 1 6 SHEET 1 A 3 PHE A 310 PRO A 316 0 SHEET 2 A 3 ARG A 323 TRP A 329 -1 O THR A 324 N ASP A 315 SHEET 3 A 3 LYS A 364 LEU A 369 -1 O VAL A 367 N VAL A 325 SHEET 1 B 4 GLN A 356 VAL A 360 0 SHEET 2 B 4 ILE A 341 ARG A 350 -1 N TYR A 344 O VAL A 360 SHEET 3 B 4 TYR A 374 ASN A 382 -1 O ARG A 381 N ASP A 343 SHEET 4 B 4 ALA A 390 ILE A 394 -1 O ILE A 394 N TYR A 374 SHEET 1 C 3 MSE A 406 LYS A 413 0 SHEET 2 C 3 MSE A 416 THR A 422 -1 O THR A 422 N MSE A 406 SHEET 3 C 3 ARG A 457 TYR A 459 -1 O THR A 458 N VAL A 419 SHEET 1 D 4 ASP A 447 ASP A 452 0 SHEET 2 D 4 LYS A 430 LEU A 438 -1 N LEU A 433 O GLN A 449 SHEET 3 D 4 CYS A 469 TYR A 478 -1 O CYS A 469 N LEU A 438 SHEET 4 D 4 GLY A 481 PRO A 482 -1 O GLY A 481 N TYR A 478 SHEET 1 E 4 ASP A 447 ASP A 452 0 SHEET 2 E 4 LYS A 430 LEU A 438 -1 N LEU A 433 O GLN A 449 SHEET 3 E 4 CYS A 469 TYR A 478 -1 O CYS A 469 N LEU A 438 SHEET 4 E 4 GLU A 486 TYR A 491 -1 O ILE A 488 N ILE A 472 SHEET 1 F 3 VAL A 503 VAL A 508 0 SHEET 2 F 3 ALA A 513 TRP A 517 -1 O VAL A 514 N LYS A 506 SHEET 3 F 3 GLU A 554 LEU A 557 -1 O TYR A 555 N LEU A 515 SHEET 1 G 4 THR A 544 ASP A 549 0 SHEET 2 G 4 ASN A 531 THR A 538 -1 N TYR A 536 O THR A 544 SHEET 3 G 4 LEU A 565 THR A 574 -1 O ARG A 569 N PHE A 535 SHEET 4 G 4 GLY A 577 ASP A 580 -1 O GLY A 577 N THR A 574 SHEET 1 H 4 THR A 544 ASP A 549 0 SHEET 2 H 4 ASN A 531 THR A 538 -1 N TYR A 536 O THR A 544 SHEET 3 H 4 LEU A 565 THR A 574 -1 O ARG A 569 N PHE A 535 SHEET 4 H 4 PHE A 584 THR A 587 -1 O PHE A 586 N TYR A 566 SSBOND 1 CYS A 436 CYS A 444 1555 1555 2.04 LINK C VAL A 405 N MSE A 406 1555 1555 1.33 LINK C MSE A 406 N ASP A 407 1555 1555 1.33 LINK C ASN A 415 N MSE A 416 1555 1555 1.33 LINK C MSE A 416 N LEU A 417 1555 1555 1.33 LINK C TYR A 566 N MSE A 567 1555 1555 1.33 LINK C MSE A 567 N VAL A 568 1555 1555 1.33 LINK C ARG A 569 N MSE A 570 1555 1555 1.33 LINK C MSE A 570 N ALA A 571 1555 1555 1.33 SITE 1 AC1 6 EDO A 10 HOH A 53 THR A 366 VAL A 437 SITE 2 AC1 6 TYR A 470 HOH A 612 SITE 1 AC2 7 HOH A 55 HOH A 112 PRO A 412 ALA A 490 SITE 2 AC2 7 TYR A 491 GLN A 494 PHE A 528 SITE 1 AC3 7 PHE A 535 ARG A 537 GLU A 543 MSE A 567 SITE 2 AC3 7 VAL A 568 ARG A 569 GLU A 583 SITE 1 AC4 9 HOH A 51 HOH A 295 PHE A 399 ALA A 401 SITE 2 AC4 9 THR A 402 TYR A 478 ASP A 480 PRO A 482 SITE 3 AC4 9 GLY A 483 SITE 1 AC5 3 ARG A 569 TYR A 573 ASP A 580 SITE 1 AC6 3 GLU A 426 VAL A 428 GLY A 453 SITE 1 AC7 5 HOH A 125 HIS A 403 PRO A 404 ASN A 542 SITE 2 AC7 5 THR A 544 SITE 1 AC8 3 GLU A 434 LEU A 471 THR A 473 SITE 1 AC9 5 VAL A 328 GLU A 434 THR A 446 TRP A 448 SITE 2 AC9 5 HOH A 638 SITE 1 BC1 7 EDO A 1 HOH A 72 ASN A 368 TRP A 435 SITE 2 BC1 7 VAL A 437 ILE A 445 ASP A 447 SITE 1 BC2 3 HOH A 92 ILE A 341 ASN A 361 SITE 1 BC3 3 HOH A 292 TRP A 311 TYR A 312 SITE 1 BC4 4 PRO A 316 SER A 317 ALA A 362 THR A 363 SITE 1 BC5 3 LYS A 510 ASN A 511 GLU A 512 SITE 1 BC6 6 MSE A 416 LEU A 417 LEU A 460 GLY A 462 SITE 2 BC6 6 LEU A 464 HOH A 648 SITE 1 BC7 2 ILE A 488 LYS A 489 SITE 1 BC8 5 ARG A 457 GLY A 509 GLU A 512 VAL A 514 SITE 2 BC8 5 THR A 556 SITE 1 BC9 5 THR A 402 SER A 559 LEU A 560 THR A 561 SITE 2 BC9 5 TYR A 566 SITE 1 CC1 4 SER A 309 GLN A 450 ARG A 461 HOH A 606 SITE 1 CC2 2 TYR A 555 THR A 556 CRYST1 41.565 75.347 107.185 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024059 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009330 0.00000