HEADER OXIDOREDUCTASE 22-DEC-09 3L5L TITLE XENOBIOTIC REDUCTASE A - OXIDIZED COMPND MOL_ID: 1; COMPND 2 MOLECULE: XENOBIOTIC REDUCTASE A; COMPND 3 CHAIN: A; COMPND 4 EC: 1.6.99.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: 86; SOURCE 5 GENE: XENA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TIM BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.SPIEGELHAUER,H.DOBBEK REVDAT 3 01-NOV-23 3L5L 1 REMARK REVDAT 2 26-FEB-14 3L5L 1 JRNL VERSN REVDAT 1 23-MAR-10 3L5L 0 JRNL AUTH O.SPIEGELHAUER,S.MENDE,F.DICKERT,S.H.KNAUER,G.M.ULLMANN, JRNL AUTH 2 H.DOBBEK JRNL TITL CYSTEINE AS A MODULATOR RESIDUE IN THE ACTIVE SITE OF JRNL TITL 2 XENOBIOTIC REDUCTASE A: A STRUCTURAL, THERMODYNAMIC AND JRNL TITL 3 KINETIC STUDY JRNL REF J.MOL.BIOL. V. 398 66 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20206186 JRNL DOI 10.1016/J.JMB.2010.02.044 REMARK 2 REMARK 2 RESOLUTION. 1.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.5_2) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 180915 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.130 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 9045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.3530 - 2.2190 1.00 18178 956 0.1310 0.1480 REMARK 3 2 2.2190 - 1.7610 1.00 17814 938 0.1050 0.1220 REMARK 3 3 1.7610 - 1.5390 1.00 17700 931 0.0890 0.1080 REMARK 3 4 1.5390 - 1.3980 0.99 17543 923 0.0950 0.1210 REMARK 3 5 1.3980 - 1.2980 0.99 17364 914 0.1100 0.1400 REMARK 3 6 1.2980 - 1.2210 0.98 17267 909 0.1230 0.1430 REMARK 3 7 1.2210 - 1.1600 0.97 17062 898 0.1410 0.1600 REMARK 3 8 1.1600 - 1.1100 0.96 16890 889 0.1620 0.1830 REMARK 3 9 1.1100 - 1.0670 0.95 16628 875 0.2030 0.2080 REMARK 3 10 1.0670 - 1.0300 0.88 15424 812 0.2700 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.43 REMARK 3 B_SOL : 66.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.05300 REMARK 3 B22 (A**2) : -0.72700 REMARK 3 B33 (A**2) : -1.32600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3126 REMARK 3 ANGLE : 1.423 4308 REMARK 3 CHIRALITY : 0.084 459 REMARK 3 PLANARITY : 0.013 561 REMARK 3 DIHEDRAL : 18.293 1162 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 3L5L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1000056861. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 180933 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.020 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2H8X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 100MM HEPES, PH REMARK 280 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 28.94650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.70800 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 78.36000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 28.94650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.70800 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 78.36000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 28.94650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.70800 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 78.36000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 28.94650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.70800 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 57.89300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 83.41600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1673 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1772 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1935 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 361 REMARK 465 TYR A 362 REMARK 465 ARG A 363 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 133 H LYS A 195 1.25 REMARK 500 O2 SO4 A 1503 O HOH A 1903 1.89 REMARK 500 O HOH A 1710 O HOH A 1962 1.90 REMARK 500 O HOH A 1703 O HOH A 2023 1.90 REMARK 500 O HOH A 1726 O HOH A 1907 1.93 REMARK 500 O HOH A 1749 O HOH A 1902 1.99 REMARK 500 O HOH A 1770 O HOH A 1920 2.00 REMARK 500 O HOH A 1575 O HOH A 2057 2.00 REMARK 500 O HOH A 1750 O HOH A 1857 2.04 REMARK 500 OG SER A 300 O HOH A 1515 2.10 REMARK 500 O HOH A 1713 O HOH A 1719 2.11 REMARK 500 O HOH A 1619 O HOH A 1728 2.12 REMARK 500 O HOH A 1748 O HOH A 1922 2.12 REMARK 500 O HOH A 1703 O HOH A 1779 2.13 REMARK 500 O HOH A 1711 O HOH A 1802 2.14 REMARK 500 O HOH A 1719 O HOH A 1897 2.15 REMARK 500 CE MET A 283 O HOH A 1970 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1751 O HOH A 1884 8455 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 11 -135.20 51.66 REMARK 500 LYS A 11 -134.22 49.81 REMARK 500 GLU A 56 157.34 -44.54 REMARK 500 ILE A 73 35.54 -142.25 REMARK 500 ALA A 139 -127.70 51.00 REMARK 500 TYR A 183 -168.85 -79.71 REMARK 500 TRP A 302 97.22 113.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 1765 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 1509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BU3 A 2176 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H8X RELATED DB: PDB REMARK 900 RELATED ID: 3L5M RELATED DB: PDB REMARK 900 RELATED ID: 3L65 RELATED DB: PDB REMARK 900 RELATED ID: 3L66 RELATED DB: PDB REMARK 900 RELATED ID: 3L67 RELATED DB: PDB REMARK 900 RELATED ID: 3L68 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE WHICH DERIVES FROM REMARK 999 PSEUDOMONAS PUTIDA STRAIN 86 DOES NOT CURRENTLY EXIST. DBREF 3L5L A 1 363 PDB 3L5L 3L5L 1 363 SEQRES 1 A 363 MET SER ALA LEU PHE GLU PRO TYR THR LEU LYS ASP VAL SEQRES 2 A 363 THR LEU ARG ASN ARG ILE ALA ILE PRO PRO MET CYS GLN SEQRES 3 A 363 TYR MET ALA GLU ASP GLY MET ILE ASN ASP TRP HIS HIS SEQRES 4 A 363 VAL HIS LEU ALA GLY LEU ALA ARG GLY GLY ALA GLY LEU SEQRES 5 A 363 LEU VAL VAL GLU ALA THR ALA VAL ALA PRO GLU GLY ARG SEQRES 6 A 363 ILE THR PRO GLY CYS ALA GLY ILE TRP SER ASP ALA HIS SEQRES 7 A 363 ALA GLN ALA PHE VAL PRO VAL VAL GLN ALA ILE LYS ALA SEQRES 8 A 363 ALA GLY SER VAL PRO GLY ILE GLN ILE ALA HIS ALA GLY SEQRES 9 A 363 ARG LYS ALA SER ALA ASN ARG PRO TRP GLU GLY ASP ASP SEQRES 10 A 363 HIS ILE ALA ALA ASP ASP THR ARG GLY TRP GLU THR ILE SEQRES 11 A 363 ALA PRO SER ALA ILE ALA PHE GLY ALA HIS LEU PRO LYS SEQRES 12 A 363 VAL PRO ARG GLU MET THR LEU ASP ASP ILE ALA ARG VAL SEQRES 13 A 363 LYS GLN ASP PHE VAL ASP ALA ALA ARG ARG ALA ARG ASP SEQRES 14 A 363 ALA GLY PHE GLU TRP ILE GLU LEU HIS PHE ALA HIS GLY SEQRES 15 A 363 TYR LEU GLY GLN SER PHE PHE SER GLU HIS SER ASN LYS SEQRES 16 A 363 ARG THR ASP ALA TYR GLY GLY SER PHE ASP ASN ARG SER SEQRES 17 A 363 ARG PHE LEU LEU GLU THR LEU ALA ALA VAL ARG GLU VAL SEQRES 18 A 363 TRP PRO GLU ASN LEU PRO LEU THR ALA ARG PHE GLY VAL SEQRES 19 A 363 LEU GLU TYR ASP GLY ARG ASP GLU GLN THR LEU GLU GLU SEQRES 20 A 363 SER ILE GLU LEU ALA ARG ARG PHE LYS ALA GLY GLY LEU SEQRES 21 A 363 ASP LEU LEU SER VAL SER VAL GLY PHE THR ILE PRO ASP SEQRES 22 A 363 THR ASN ILE PRO TRP GLY PRO ALA PHE MET GLY PRO ILE SEQRES 23 A 363 ALA GLU ARG VAL ARG ARG GLU ALA LYS LEU PRO VAL THR SEQRES 24 A 363 SER ALA TRP GLY PHE GLY THR PRO GLN LEU ALA GLU ALA SEQRES 25 A 363 ALA LEU GLN ALA ASN GLN LEU ASP LEU VAL SER VAL GLY SEQRES 26 A 363 ARG ALA HIS LEU ALA ASP PRO HIS TRP ALA TYR PHE ALA SEQRES 27 A 363 ALA LYS GLU LEU GLY VAL GLU LYS ALA SER TRP THR LEU SEQRES 28 A 363 PRO ALA PRO TYR ALA HIS TRP LEU GLU ARG TYR ARG HET SO4 A1501 5 HET SO4 A1502 5 HET SO4 A1503 5 HET SO4 A1504 5 HET SO4 A1505 5 HET SO4 A1506 5 HET SO4 A1507 5 HET BU3 A1508 32 HET BU3 A1509 16 HET FMN A1401 47 HET BU3 A2176 16 HETNAM SO4 SULFATE ION HETNAM BU3 (R,R)-2,3-BUTANEDIOL HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 SO4 7(O4 S 2-) FORMUL 9 BU3 3(C4 H10 O2) FORMUL 11 FMN C17 H21 N4 O9 P FORMUL 13 HOH *582(H2 O) HELIX 1 1 SER A 2 GLU A 6 5 5 HELIX 2 2 ASN A 35 GLY A 48 1 14 HELIX 3 3 ALA A 61 ARG A 65 5 5 HELIX 4 4 SER A 75 ALA A 92 1 18 HELIX 5 5 ALA A 103 ALA A 107 5 5 HELIX 6 6 ARG A 111 GLY A 115 5 5 HELIX 7 7 THR A 149 GLY A 171 1 23 HELIX 8 8 TYR A 183 SER A 190 1 8 HELIX 9 9 SER A 203 GLU A 220 1 18 HELIX 10 10 ARG A 240 GLY A 258 1 19 HELIX 11 11 MET A 283 LYS A 295 1 13 HELIX 12 12 THR A 306 ALA A 316 1 11 HELIX 13 13 GLY A 325 ASP A 331 1 7 HELIX 14 14 HIS A 333 LEU A 342 1 10 HELIX 15 15 LYS A 346 LEU A 351 5 6 HELIX 16 16 PRO A 352 GLU A 360 1 9 SHEET 1 A 2 TYR A 8 LEU A 10 0 SHEET 2 A 2 VAL A 13 LEU A 15 -1 O LEU A 15 N TYR A 8 SHEET 1 B 9 ILE A 19 ILE A 21 0 SHEET 2 B 9 LEU A 52 ALA A 59 1 O LEU A 52 N ILE A 21 SHEET 3 B 9 VAL A 95 ALA A 101 1 O GLY A 97 N LEU A 53 SHEET 4 B 9 TRP A 174 PHE A 179 1 O HIS A 178 N ILE A 100 SHEET 5 B 9 LEU A 228 LEU A 235 1 O ARG A 231 N LEU A 177 SHEET 6 B 9 LEU A 262 VAL A 267 1 O SER A 264 N ALA A 230 SHEET 7 B 9 VAL A 298 SER A 300 1 O THR A 299 N VAL A 265 SHEET 8 B 9 LEU A 321 SER A 323 1 O SER A 323 N SER A 300 SHEET 9 B 9 ILE A 19 ILE A 21 1 N ALA A 20 O VAL A 322 SHEET 1 C 2 ILE A 130 ALA A 131 0 SHEET 2 C 2 ARG A 146 GLU A 147 1 O ARG A 146 N ALA A 131 SITE 1 AC1 7 LYS A 346 ALA A 347 SER A 348 HOH A1716 SITE 2 AC1 7 HOH A1825 HOH A1827 HOH A1843 SITE 1 AC2 6 TYR A 8 ARG A 18 HOH A1609 HOH A1614 SITE 2 AC2 6 HOH A1690 HOH A1911 SITE 1 AC3 7 LYS A 295 LEU A 296 PRO A 297 HOH A1644 SITE 2 AC3 7 HOH A1858 HOH A1903 HOH A2013 SITE 1 AC4 7 TRP A 278 GLY A 279 PRO A 280 TRP A 302 SITE 2 AC4 7 HOH A1671 HOH A2042 HOH A2081 SITE 1 AC5 6 ASP A 205 ARG A 209 ARG A 254 HOH A1627 SITE 2 AC5 6 HOH A1775 HOH A1786 SITE 1 AC6 3 ARG A 111 ARG A 125 HOH A1814 SITE 1 AC7 8 ILE A 66 HIS A 178 HIS A 181 TYR A 183 SITE 2 AC7 8 FMN A1401 HOH A1769 HOH A1918 HOH A2007 SITE 1 AC8 8 HIS A 181 ARG A 231 SER A 266 PHE A 269 SITE 2 AC8 8 TRP A 302 FMN A1401 HOH A1515 HOH A1769 SITE 1 AC9 9 PHE A 189 SER A 190 GLU A 191 ARG A 240 SITE 2 AC9 9 GLN A 243 GLU A 247 HOH A1551 HOH A1823 SITE 3 AC9 9 HOH A1949 SITE 1 BC1 21 PRO A 22 PRO A 23 MET A 24 CYS A 25 SITE 2 BC1 21 ALA A 57 GLN A 99 HIS A 178 HIS A 181 SITE 3 BC1 21 ARG A 231 ALA A 301 TRP A 302 GLY A 303 SITE 4 BC1 21 GLY A 325 ARG A 326 TRP A 358 SO4 A1507 SITE 5 BC1 21 BU3 A1508 HOH A1545 HOH A1591 HOH A2007 SITE 6 BC1 21 HOH A2077 SITE 1 BC2 5 THR A 14 LYS A 90 VAL A 95 GLU A 173 SITE 2 BC2 5 HOH A1573 CRYST1 57.893 83.416 156.720 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017273 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006381 0.00000