HEADER TRANSCRIPTION REGULATOR 22-DEC-09 3L5Z TITLE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR, GNTR FAMILY FROM TITLE 2 BACILLUS CEREUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, GNTR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 222523; SOURCE 4 STRAIN: ATCC 10987; SOURCE 5 GENE: BCE_3424; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG19 KEYWDS TRANSCRIPTIONAL REGULATOR, GNTR FAMILY, STRUCTURAL GENOMICS, MCSG, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 4 TRANSCRIPTION REGULATOR EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,C.HATZOS,B.FELDMANN,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 01-NOV-17 3L5Z 1 REMARK REVDAT 2 13-JUL-11 3L5Z 1 VERSN REVDAT 1 05-JAN-10 3L5Z 0 JRNL AUTH C.CHANG,C.HATZOS,B.FELDMANN,S.CLANCY,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR, GNTR FAMILY JRNL TITL 2 FROM BACILLUS CEREUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 19505 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 994 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1344 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2910 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.52000 REMARK 3 B22 (A**2) : -3.52000 REMARK 3 B33 (A**2) : 7.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.257 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.077 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.894 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2356 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3184 ; 1.304 ; 1.968 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 284 ; 6.476 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;25.139 ;24.423 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;16.144 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;11.138 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1718 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1422 ; 0.496 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2336 ; 0.980 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 934 ; 1.548 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 848 ; 2.751 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9115 89.6464 42.6946 REMARK 3 T TENSOR REMARK 3 T11: 0.1105 T22: 0.2192 REMARK 3 T33: 0.1825 T12: 0.0595 REMARK 3 T13: 0.0123 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 8.0145 L22: 9.0892 REMARK 3 L33: 4.5624 L12: 1.6178 REMARK 3 L13: -0.5393 L23: -0.3984 REMARK 3 S TENSOR REMARK 3 S11: 0.2746 S12: -0.5115 S13: 1.0303 REMARK 3 S21: 0.0121 S22: -0.5126 S23: 0.6160 REMARK 3 S31: -0.6540 S32: -0.0724 S33: 0.2380 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 125 REMARK 3 ORIGIN FOR THE GROUP (A): 40.9257 70.1955 34.7758 REMARK 3 T TENSOR REMARK 3 T11: 0.0972 T22: 0.0644 REMARK 3 T33: 0.1435 T12: 0.0310 REMARK 3 T13: 0.0024 T23: -0.0369 REMARK 3 L TENSOR REMARK 3 L11: 14.2974 L22: 15.6025 REMARK 3 L33: 9.1115 L12: 4.9374 REMARK 3 L13: 3.7465 L23: 1.6383 REMARK 3 S TENSOR REMARK 3 S11: 0.1700 S12: 0.7438 S13: -1.0357 REMARK 3 S21: -0.9738 S22: 0.2755 S23: -0.1907 REMARK 3 S31: 0.2108 S32: 0.6379 S33: -0.4455 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 126 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 39.9501 88.1289 41.4402 REMARK 3 T TENSOR REMARK 3 T11: 0.0349 T22: 0.1545 REMARK 3 T33: 0.1484 T12: -0.0069 REMARK 3 T13: -0.0448 T23: -0.0831 REMARK 3 L TENSOR REMARK 3 L11: 3.7714 L22: 22.1658 REMARK 3 L33: 4.1283 L12: 7.1532 REMARK 3 L13: -0.8520 L23: 1.2583 REMARK 3 S TENSOR REMARK 3 S11: 0.1682 S12: -0.5550 S13: 0.1738 REMARK 3 S21: 0.0215 S22: -0.4266 S23: 0.0888 REMARK 3 S31: -0.3376 S32: 0.1293 S33: 0.2584 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3605 77.2323 51.9516 REMARK 3 T TENSOR REMARK 3 T11: 0.1223 T22: 0.2467 REMARK 3 T33: 0.0985 T12: 0.0455 REMARK 3 T13: 0.0431 T23: 0.0687 REMARK 3 L TENSOR REMARK 3 L11: 3.6721 L22: 12.2612 REMARK 3 L33: 0.2108 L12: -1.4263 REMARK 3 L13: 0.9062 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: -0.2654 S12: -0.7813 S13: -0.0887 REMARK 3 S21: 0.7831 S22: 0.2278 S23: -0.4311 REMARK 3 S31: 0.0129 S32: -0.1546 S33: 0.0376 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 174 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9987 79.2811 42.9265 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.3741 REMARK 3 T33: 0.2639 T12: -0.0201 REMARK 3 T13: -0.0663 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 1.9423 L22: 4.8814 REMARK 3 L33: 1.5325 L12: -0.6102 REMARK 3 L13: 0.2733 L23: -2.9200 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: -0.3132 S13: -0.0348 REMARK 3 S21: -0.2249 S22: -0.2471 S23: -0.6926 REMARK 3 S31: 0.1472 S32: 0.2138 S33: 0.3261 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8848 94.3530 29.4204 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.1034 REMARK 3 T33: 0.1312 T12: -0.0101 REMARK 3 T13: -0.0219 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 14.9078 L22: 10.0349 REMARK 3 L33: 10.1856 L12: -5.9055 REMARK 3 L13: 0.1265 L23: -1.5094 REMARK 3 S TENSOR REMARK 3 S11: 0.2367 S12: 0.2916 S13: 0.0037 REMARK 3 S21: -0.1675 S22: -0.0399 S23: 0.5030 REMARK 3 S31: -0.2460 S32: -0.8838 S33: -0.1968 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 47.1140 78.7045 43.2231 REMARK 3 T TENSOR REMARK 3 T11: 0.0710 T22: 0.2245 REMARK 3 T33: 0.2052 T12: 0.0763 REMARK 3 T13: -0.0360 T23: 0.0601 REMARK 3 L TENSOR REMARK 3 L11: 2.1520 L22: 8.4828 REMARK 3 L33: 0.1207 L12: 0.4145 REMARK 3 L13: 0.7349 L23: 0.4516 REMARK 3 S TENSOR REMARK 3 S11: -0.2098 S12: -0.1795 S13: -0.3082 REMARK 3 S21: 0.2876 S22: 0.2911 S23: -0.4709 REMARK 3 S31: -0.0154 S32: 0.0620 S33: -0.0813 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 228 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 58.8068 90.6681 46.3636 REMARK 3 T TENSOR REMARK 3 T11: 0.0833 T22: 0.4087 REMARK 3 T33: 0.4310 T12: -0.1711 REMARK 3 T13: -0.0541 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 16.3575 L22: 10.0671 REMARK 3 L33: 27.4935 L12: -9.1987 REMARK 3 L13: 20.9383 L23: -12.7410 REMARK 3 S TENSOR REMARK 3 S11: -0.3759 S12: 0.1668 S13: 0.1312 REMARK 3 S21: 0.6118 S22: -0.3943 S23: -0.0913 REMARK 3 S31: -0.7438 S32: 0.4767 S33: 0.7701 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 108 REMARK 3 ORIGIN FOR THE GROUP (A): 80.0961 87.0247 30.9268 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.3882 REMARK 3 T33: 0.2621 T12: 0.1142 REMARK 3 T13: 0.0234 T23: -0.0833 REMARK 3 L TENSOR REMARK 3 L11: 10.7914 L22: 11.6858 REMARK 3 L33: 11.9247 L12: 6.2152 REMARK 3 L13: 7.2011 L23: 7.0397 REMARK 3 S TENSOR REMARK 3 S11: -0.0923 S12: 1.2915 S13: -0.5979 REMARK 3 S21: -0.8093 S22: -0.0732 S23: 0.1670 REMARK 3 S31: 0.5394 S32: 0.9832 S33: 0.1655 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 109 B 125 REMARK 3 ORIGIN FOR THE GROUP (A): 77.5254 102.3373 46.0194 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.0884 REMARK 3 T33: 0.1569 T12: 0.0556 REMARK 3 T13: 0.0227 T23: -0.0736 REMARK 3 L TENSOR REMARK 3 L11: 20.5784 L22: 16.7906 REMARK 3 L33: 5.5657 L12: 5.0502 REMARK 3 L13: -0.2979 L23: 0.1412 REMARK 3 S TENSOR REMARK 3 S11: 0.4361 S12: -0.5165 S13: 1.6910 REMARK 3 S21: -0.0453 S22: -0.2172 S23: 0.5904 REMARK 3 S31: -0.5912 S32: -0.1336 S33: -0.2189 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 126 B 148 REMARK 3 ORIGIN FOR THE GROUP (A): 75.3163 88.1708 33.4827 REMARK 3 T TENSOR REMARK 3 T11: 0.0292 T22: 0.2223 REMARK 3 T33: 0.2296 T12: -0.0283 REMARK 3 T13: 0.0376 T23: -0.1042 REMARK 3 L TENSOR REMARK 3 L11: 6.5432 L22: 1.6841 REMARK 3 L33: 4.5237 L12: 1.3236 REMARK 3 L13: 5.5519 L23: 1.1556 REMARK 3 S TENSOR REMARK 3 S11: 0.2552 S12: 0.4629 S13: -0.4718 REMARK 3 S21: -0.0301 S22: 0.0767 S23: -0.2020 REMARK 3 S31: 0.2190 S32: 0.3570 S33: -0.3319 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 149 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 85.6545 84.2987 45.0978 REMARK 3 T TENSOR REMARK 3 T11: 0.1113 T22: 0.1283 REMARK 3 T33: 0.1063 T12: -0.0361 REMARK 3 T13: 0.0193 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 5.4256 L22: 5.7582 REMARK 3 L33: 12.2331 L12: 0.6080 REMARK 3 L13: 2.8024 L23: -3.2907 REMARK 3 S TENSOR REMARK 3 S11: -0.1014 S12: 0.4402 S13: -0.2215 REMARK 3 S21: -0.2571 S22: 0.0145 S23: -0.3120 REMARK 3 S31: 1.0694 S32: -0.0775 S33: 0.0869 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 174 B 187 REMARK 3 ORIGIN FOR THE GROUP (A): 67.5872 89.8380 45.6955 REMARK 3 T TENSOR REMARK 3 T11: 0.3999 T22: 0.3904 REMARK 3 T33: 0.3817 T12: 0.0516 REMARK 3 T13: -0.0023 T23: 0.0618 REMARK 3 L TENSOR REMARK 3 L11: 0.2941 L22: 0.0359 REMARK 3 L33: 7.8617 L12: 0.9229 REMARK 3 L13: 2.6006 L23: 2.4419 REMARK 3 S TENSOR REMARK 3 S11: -0.4616 S12: -0.4093 S13: 0.1483 REMARK 3 S21: -0.0592 S22: -0.1517 S23: 0.1498 REMARK 3 S31: -0.9174 S32: -0.9140 S33: 0.6133 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 188 B 203 REMARK 3 ORIGIN FOR THE GROUP (A): 66.1025 95.0243 24.8459 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.2045 REMARK 3 T33: 0.0525 T12: -0.0928 REMARK 3 T13: 0.0166 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 26.4092 L22: 19.5046 REMARK 3 L33: 16.0467 L12: -1.2632 REMARK 3 L13: -7.2228 L23: 0.6438 REMARK 3 S TENSOR REMARK 3 S11: 0.2131 S12: 1.3479 S13: 0.8504 REMARK 3 S21: -0.5579 S22: 0.0422 S23: -0.5243 REMARK 3 S31: -1.3009 S32: 0.8185 S33: -0.2553 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 204 B 227 REMARK 3 ORIGIN FOR THE GROUP (A): 71.3526 90.3884 44.6541 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.2706 REMARK 3 T33: 0.2132 T12: 0.0040 REMARK 3 T13: -0.0170 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.2715 L22: 1.0116 REMARK 3 L33: 0.7319 L12: -0.5320 REMARK 3 L13: 0.5154 L23: -1.0031 REMARK 3 S TENSOR REMARK 3 S11: -0.1422 S12: -0.0730 S13: 0.0041 REMARK 3 S21: 0.2458 S22: 0.1588 S23: 0.1386 REMARK 3 S31: -0.2414 S32: -0.0885 S33: -0.0166 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 228 B 238 REMARK 3 ORIGIN FOR THE GROUP (A): 58.9738 80.1712 39.8696 REMARK 3 T TENSOR REMARK 3 T11: 0.1110 T22: 0.1548 REMARK 3 T33: 0.3413 T12: 0.0491 REMARK 3 T13: -0.0969 T23: -0.0474 REMARK 3 L TENSOR REMARK 3 L11: 8.1680 L22: 10.1585 REMARK 3 L33: 15.7932 L12: 2.5721 REMARK 3 L13: -1.0759 L23: -13.3994 REMARK 3 S TENSOR REMARK 3 S11: 0.5996 S12: -0.1224 S13: -0.1754 REMARK 3 S21: -0.1056 S22: -0.0419 S23: 0.4678 REMARK 3 S31: 0.3025 S32: 0.1488 S33: -0.5577 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L5Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19580 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.6700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 0.77100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MGCL2, 0.1M TRIS-CL PH 8.5, 30% REMARK 280 PEG 400, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.34650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 60.59550 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 60.59550 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.67325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 60.59550 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 60.59550 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.01975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 60.59550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 60.59550 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.67325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 60.59550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 60.59550 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.01975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.34650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 90 REMARK 465 ASN A 91 REMARK 465 ALA A 92 REMARK 465 VAL A 93 REMARK 465 TYR A 94 REMARK 465 GLY A 95 REMARK 465 ALA A 239 REMARK 465 LYS A 240 REMARK 465 SER A 241 REMARK 465 TYR A 242 REMARK 465 LYS A 243 REMARK 465 GLU A 244 REMARK 465 ALA A 245 REMARK 465 SER B 90 REMARK 465 ASN B 91 REMARK 465 ALA B 92 REMARK 465 VAL B 93 REMARK 465 TYR B 94 REMARK 465 GLY B 95 REMARK 465 ALA B 239 REMARK 465 LYS B 240 REMARK 465 SER B 241 REMARK 465 TYR B 242 REMARK 465 LYS B 243 REMARK 465 GLU B 244 REMARK 465 ALA B 245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 97 11.36 -64.47 REMARK 500 SER A 137 -4.52 76.96 REMARK 500 GLU B 162 55.44 80.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG5 B 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC37964.1 RELATED DB: TARGETDB DBREF 3L5Z A 92 245 UNP Q734I1 Q734I1_BACC1 92 245 DBREF 3L5Z B 92 245 UNP Q734I1 Q734I1_BACC1 92 245 SEQADV 3L5Z SER A 90 UNP Q734I1 EXPRESSION TAG SEQADV 3L5Z ASN A 91 UNP Q734I1 EXPRESSION TAG SEQADV 3L5Z SER B 90 UNP Q734I1 EXPRESSION TAG SEQADV 3L5Z ASN B 91 UNP Q734I1 EXPRESSION TAG SEQRES 1 A 156 SER ASN ALA VAL TYR GLY SER GLU VAL GLU SER LYS ILE SEQRES 2 A 156 ILE GLU PHE THR ILE VAL GLY ALA ASP GLU ILE ILE ALA SEQRES 3 A 156 GLU LYS LEU GLY ILE SER VAL GLY ASP PHE VAL TYR LYS SEQRES 4 A 156 ILE ILE ARG LEU ARG ILE ILE HIS SER ILE PRO THR ILE SEQRES 5 A 156 MSE GLU HIS THR TRP MSE PRO ILE ALA VAL ILE PRO GLY SEQRES 6 A 156 VAL GLU ALA SER VAL LEU GLU GLU SER ILE TYR SER TYR SEQRES 7 A 156 ILE GLN ASN LYS LEU GLY LEU LYS VAL GLY THR SER VAL SEQRES 8 A 156 VAL ARG VAL LYS GLY ILE ARG PRO ASP ASP LYS GLU LYS SEQRES 9 A 156 GLN PHE MSE ASN LEU THR ASN GLN ASP PHE LEU MSE ARG SEQRES 10 A 156 VAL GLU GLN VAL ALA TYR LEU THR ASP GLY ARG THR PHE SEQRES 11 A 156 GLU TYR SER TYR ALA ASP HIS LEU PRO GLU THR PHE GLU SEQRES 12 A 156 PHE GLU THR VAL ILE THR ALA LYS SER TYR LYS GLU ALA SEQRES 1 B 156 SER ASN ALA VAL TYR GLY SER GLU VAL GLU SER LYS ILE SEQRES 2 B 156 ILE GLU PHE THR ILE VAL GLY ALA ASP GLU ILE ILE ALA SEQRES 3 B 156 GLU LYS LEU GLY ILE SER VAL GLY ASP PHE VAL TYR LYS SEQRES 4 B 156 ILE ILE ARG LEU ARG ILE ILE HIS SER ILE PRO THR ILE SEQRES 5 B 156 MSE GLU HIS THR TRP MSE PRO ILE ALA VAL ILE PRO GLY SEQRES 6 B 156 VAL GLU ALA SER VAL LEU GLU GLU SER ILE TYR SER TYR SEQRES 7 B 156 ILE GLN ASN LYS LEU GLY LEU LYS VAL GLY THR SER VAL SEQRES 8 B 156 VAL ARG VAL LYS GLY ILE ARG PRO ASP ASP LYS GLU LYS SEQRES 9 B 156 GLN PHE MSE ASN LEU THR ASN GLN ASP PHE LEU MSE ARG SEQRES 10 B 156 VAL GLU GLN VAL ALA TYR LEU THR ASP GLY ARG THR PHE SEQRES 11 B 156 GLU TYR SER TYR ALA ASP HIS LEU PRO GLU THR PHE GLU SEQRES 12 B 156 PHE GLU THR VAL ILE THR ALA LYS SER TYR LYS GLU ALA MODRES 3L5Z MSE A 142 MET SELENOMETHIONINE MODRES 3L5Z MSE A 147 MET SELENOMETHIONINE MODRES 3L5Z MSE A 196 MET SELENOMETHIONINE MODRES 3L5Z MSE A 205 MET SELENOMETHIONINE MODRES 3L5Z MSE B 142 MET SELENOMETHIONINE MODRES 3L5Z MSE B 147 MET SELENOMETHIONINE MODRES 3L5Z MSE B 196 MET SELENOMETHIONINE MODRES 3L5Z MSE B 205 MET SELENOMETHIONINE HET MSE A 142 8 HET MSE A 147 8 HET MSE A 196 8 HET MSE A 205 8 HET MSE B 142 8 HET MSE B 147 8 HET MSE B 196 8 HET MSE B 205 8 HET EDO B 1 4 HET PG5 B 246 12 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PG5 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 EDO C2 H6 O2 FORMUL 4 PG5 C8 H18 O4 FORMUL 5 HOH *49(H2 O) HELIX 1 1 ASP A 111 GLY A 119 1 9 HELIX 2 2 VAL A 155 LEU A 160 1 6 HELIX 3 3 SER A 163 LYS A 171 1 9 HELIX 4 4 ASP A 189 MSE A 196 1 8 HELIX 5 5 PRO A 228 PHE A 231 5 4 HELIX 6 6 ASP B 111 GLY B 119 1 9 HELIX 7 7 VAL B 155 GLU B 162 1 8 HELIX 8 8 SER B 163 LYS B 171 1 9 HELIX 9 9 ASP B 189 ASN B 197 1 9 HELIX 10 10 PRO B 228 PHE B 231 5 4 SHEET 1 A 7 VAL A 98 GLY A 109 0 SHEET 2 A 7 PHE A 125 ILE A 135 -1 O ILE A 134 N GLU A 99 SHEET 3 A 7 ILE A 138 PRO A 148 -1 O MSE A 147 N TYR A 127 SHEET 4 A 7 THR A 218 HIS A 226 -1 O TYR A 221 N TRP A 146 SHEET 5 A 7 LEU A 204 LEU A 213 -1 N GLN A 209 O SER A 222 SHEET 6 A 7 VAL A 176 ILE A 186 -1 N GLY A 177 O TYR A 212 SHEET 7 A 7 PHE B 233 ILE B 237 -1 O THR B 235 N VAL A 181 SHEET 1 B 7 GLU A 234 ILE A 237 0 SHEET 2 B 7 VAL B 176 ILE B 186 -1 O VAL B 181 N THR A 235 SHEET 3 B 7 LEU B 204 LEU B 213 -1 O GLU B 208 N ARG B 182 SHEET 4 B 7 THR B 218 HIS B 226 -1 O SER B 222 N GLN B 209 SHEET 5 B 7 ILE B 138 PRO B 148 -1 N TRP B 146 O TYR B 221 SHEET 6 B 7 PHE B 125 ILE B 135 -1 N ARG B 131 O GLU B 143 SHEET 7 B 7 VAL B 98 GLY B 109 -1 N ILE B 103 O ILE B 130 LINK C ILE A 141 N MSE A 142 1555 1555 1.33 LINK C MSE A 142 N GLU A 143 1555 1555 1.33 LINK C TRP A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N PRO A 148 1555 1555 1.34 LINK C PHE A 195 N MSE A 196 1555 1555 1.34 LINK C MSE A 196 N ASN A 197 1555 1555 1.33 LINK C LEU A 204 N MSE A 205 1555 1555 1.33 LINK C MSE A 205 N ARG A 206 1555 1555 1.33 LINK C ILE B 141 N MSE B 142 1555 1555 1.33 LINK C MSE B 142 N GLU B 143 1555 1555 1.33 LINK C TRP B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N PRO B 148 1555 1555 1.33 LINK C PHE B 195 N MSE B 196 1555 1555 1.33 LINK C MSE B 196 N ASN B 197 1555 1555 1.34 LINK C LEU B 204 N MSE B 205 1555 1555 1.33 LINK C MSE B 205 N ARG B 206 1555 1555 1.33 SITE 1 AC1 2 GLU A 156 GLY B 123 SITE 1 AC2 4 HOH B 46 GLU B 234 THR B 235 VAL B 236 CRYST1 121.191 121.191 114.693 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008251 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008719 0.00000