HEADER OXIDOREDUCTASE 22-DEC-09 3L60 TITLE CRYSTAL STRUCTURE OF BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE TITLE 2 SUBUNIT E2 FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT, RESIDUES 155-393; COMPND 5 SYNONYM: PROBABLE DIHYDROLIPOAMIDE S-ACETYLTRANSFERASE E2 COMPONENT COMPND 6 PDHC (LIPOATE ACETYLTRANSFERASE) (THIOLTRANSACETYLASE A); COMPND 7 EC: 2.3.1.12; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PDHC, RV2495C; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, PSI-2, DEHYDROGENASE, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR W.D.ZENCHECK,J.B.BONANNO,Y.PATSKOVSKY,R.TORO,J.FREEMAN,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL AUTHOR 3 GENOMICS (NYSGXRC) REVDAT 5 21-FEB-24 3L60 1 REMARK REVDAT 4 10-FEB-21 3L60 1 AUTHOR JRNL REVDAT 3 21-NOV-18 3L60 1 AUTHOR REVDAT 2 09-MAR-16 3L60 1 AUTHOR VERSN REVDAT 1 05-JAN-10 3L60 0 JRNL AUTH W.D.ZENCHECK,J.B.BONANNO,Y.PATSKOVSKY,R.TORO,J.FREEMAN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF BRANCHED-CHAIN ALPHA-KETO ACID JRNL TITL 2 DEHYDROGENASE SUBUNIT E2 FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0089 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 979 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1697 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.247 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1744 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1144 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2380 ; 1.448 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2803 ; 0.921 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ; 6.088 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 66 ;32.842 ;23.182 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;13.900 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;25.315 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 292 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1950 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 334 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1143 ; 0.921 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 465 ; 0.208 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1846 ; 1.633 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 601 ; 2.142 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 533 ; 3.545 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3L60 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-09. REMARK 100 THE DEPOSITION ID IS D_1000056876. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18995 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.10 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 12.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60% TASCIMATE, PH 7, 10% GLYCEROL, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.38200 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 59.38200 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.38200 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 59.38200 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 59.38200 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 59.38200 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 59.38200 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.38200 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 59.38200 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 59.38200 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 59.38200 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 59.38200 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 59.38200 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 59.38200 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 59.38200 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 59.38200 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 59.38200 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 59.38200 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 59.38200 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 59.38200 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 59.38200 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 59.38200 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 59.38200 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 59.38200 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 59.38200 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 59.38200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 8 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 51 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 152 REMARK 465 SER A 153 REMARK 465 LEU A 154 REMARK 465 ALA A 155 REMARK 465 ALA A 156 REMARK 465 ALA A 157 REMARK 465 ARG A 158 REMARK 465 GLY A 159 REMARK 465 GLY A 160 REMARK 465 VAL A 161 REMARK 465 GLY A 162 REMARK 465 ALA A 163 REMARK 465 GLY A 164 REMARK 465 GLU A 394 REMARK 465 GLY A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 176 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 SER A 243 OG REMARK 470 GLU A 245 CG CD OE1 OE2 REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 470 THR A 388 OG1 CG2 REMARK 470 LEU A 391 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 237 79.53 -118.74 REMARK 500 GLU A 245 39.44 -99.91 REMARK 500 PRO A 329 30.93 -91.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-13665A RELATED DB: TARGETDB DBREF 3L60 A 154 393 UNP O06159 O06159_MYCTU 154 393 SEQADV 3L60 MET A 152 UNP O06159 EXPRESSION TAG SEQADV 3L60 SER A 153 UNP O06159 EXPRESSION TAG SEQADV 3L60 GLU A 394 UNP O06159 EXPRESSION TAG SEQADV 3L60 GLY A 395 UNP O06159 EXPRESSION TAG SEQADV 3L60 HIS A 396 UNP O06159 EXPRESSION TAG SEQADV 3L60 HIS A 397 UNP O06159 EXPRESSION TAG SEQADV 3L60 HIS A 398 UNP O06159 EXPRESSION TAG SEQADV 3L60 HIS A 399 UNP O06159 EXPRESSION TAG SEQADV 3L60 HIS A 400 UNP O06159 EXPRESSION TAG SEQADV 3L60 HIS A 401 UNP O06159 EXPRESSION TAG SEQRES 1 A 250 MET SER LEU ALA ALA ALA ARG GLY GLY VAL GLY ALA GLY SEQRES 2 A 250 PRO ASP VAL ARG PRO VAL HIS GLY VAL HIS ALA ARG MET SEQRES 3 A 250 ALA GLU LYS MET THR LEU SER HIS LYS GLU ILE PRO THR SEQRES 4 A 250 ALA LYS ALA SER VAL GLU VAL ILE CYS ALA GLU LEU LEU SEQRES 5 A 250 ARG LEU ARG ASP ARG PHE VAL SER ALA ALA PRO GLU ILE SEQRES 6 A 250 THR PRO PHE ALA LEU THR LEU ARG LEU LEU VAL ILE ALA SEQRES 7 A 250 LEU LYS HIS ASN VAL ILE LEU ASN SER THR TRP VAL ASP SEQRES 8 A 250 SER GLY GLU GLY PRO GLN VAL HIS VAL HIS ARG GLY VAL SEQRES 9 A 250 HIS LEU GLY PHE GLY ALA ALA THR GLU ARG GLY LEU LEU SEQRES 10 A 250 VAL PRO VAL VAL THR ASP ALA GLN ASP LYS ASN THR ARG SEQRES 11 A 250 GLU LEU ALA SER ARG VAL ALA GLU LEU ILE THR GLY ALA SEQRES 12 A 250 ARG GLU GLY THR LEU THR PRO ALA GLU LEU ARG GLY SER SEQRES 13 A 250 THR PHE THR VAL SER ASN PHE GLY ALA LEU GLY VAL ASP SEQRES 14 A 250 ASP GLY VAL PRO VAL ILE ASN HIS PRO GLU ALA ALA ILE SEQRES 15 A 250 LEU GLY LEU GLY ALA ILE LYS PRO ARG PRO VAL VAL VAL SEQRES 16 A 250 GLY GLY GLU VAL VAL ALA ARG PRO THR MET THR LEU THR SEQRES 17 A 250 CYS VAL PHE ASP HIS ARG VAL VAL ASP GLY ALA GLN VAL SEQRES 18 A 250 ALA GLN PHE MET CYS GLU LEU ARG ASP LEU ILE GLU SER SEQRES 19 A 250 PRO GLU THR ALA LEU LEU ASP LEU GLU GLY HIS HIS HIS SEQRES 20 A 250 HIS HIS HIS HET UNL A 1 9 HETNAM UNL UNKNOWN LIGAND FORMUL 3 HOH *140(H2 O) HELIX 1 1 HIS A 171 ILE A 188 1 18 HELIX 2 2 CYS A 199 VAL A 210 1 12 HELIX 3 3 THR A 217 ASN A 233 1 17 HELIX 4 4 VAL A 234 LEU A 236 5 3 HELIX 5 5 ASP A 274 LYS A 278 5 5 HELIX 6 6 ASN A 279 GLY A 297 1 19 HELIX 7 7 THR A 300 ARG A 305 5 6 HELIX 8 8 ASN A 313 GLY A 318 5 6 HELIX 9 9 ASP A 368 SER A 385 1 18 HELIX 10 10 SER A 385 LEU A 390 1 6 SHEET 1 A 6 THR A 190 ILE A 198 0 SHEET 2 A 6 GLU A 349 ASP A 363 -1 O CYS A 360 N ALA A 193 SHEET 3 A 6 ALA A 332 LEU A 336 -1 N GLY A 335 O THR A 359 SHEET 4 A 6 PHE A 309 SER A 312 1 N SER A 312 O LEU A 334 SHEET 5 A 6 LEU A 257 PHE A 259 1 N GLY A 258 O PHE A 309 SHEET 6 A 6 VAL A 271 VAL A 272 -1 O VAL A 272 N LEU A 257 SHEET 1 B 3 THR A 190 ILE A 198 0 SHEET 2 B 3 GLU A 349 ASP A 363 -1 O CYS A 360 N ALA A 193 SHEET 3 B 3 LYS A 340 VAL A 346 -1 N VAL A 344 O VAL A 351 SHEET 1 C 2 SER A 238 VAL A 241 0 SHEET 2 C 2 GLN A 248 VAL A 251 -1 O GLN A 248 N VAL A 241 SHEET 1 D 2 ALA A 261 THR A 263 0 SHEET 2 D 2 GLY A 266 LEU A 268 -1 O LEU A 268 N ALA A 261 CISPEP 1 HIS A 328 PRO A 329 0 -1.98 CRYST1 118.764 118.764 118.764 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008420 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008420 0.00000